Wall clock time and date at job start Tue Mar 31 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47461 * 2 1 4 4 C 1.35524 * 125.67786 * 266.26376 * 3 2 1 5 5 C 1.35453 * 108.87332 * 179.97438 * 4 3 2 6 6 C 1.39834 * 107.86285 * 0.02562 * 5 4 3 7 7 C 1.37653 * 125.67669 * 86.25898 * 3 2 1 8 8 C 1.46678 * 126.23403 * 0.03858 * 7 3 2 9 9 O 1.21699 * 119.99664 * 353.38097 * 8 7 3 10 10 N 1.34771 * 119.99995 * 173.38847 * 8 7 3 11 11 C 1.47424 * 125.65033 * 354.07011 * 10 8 7 12 12 C 1.54911 * 104.83300 * 204.09353 * 11 10 8 13 13 C 1.55158 * 101.58225 * 322.98896 * 12 11 10 14 14 H 1.08998 * 110.72249 * 153.86737 * 13 12 11 15 15 N 1.46503 * 110.71545 * 277.14245 * 13 12 11 16 16 C 1.36940 * 119.99307 * 222.82515 * 15 13 12 17 17 H 1.08001 * 120.00350 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99812 * 180.02562 * 16 15 13 19 19 N 1.31618 * 119.99832 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99970 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47344 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46933 * 120.00027 * 20 18 16 23 23 H 1.48499 * 109.47130 * 239.99359 * 20 18 16 24 24 C 1.47025 * 125.64883 * 173.76230 * 10 8 7 25 25 H 1.09002 * 109.88466 * 59.55638 * 24 10 8 26 26 C 1.53003 * 109.87870 * 298.39172 * 24 10 8 27 27 H 1.08996 * 109.47141 * 184.23870 * 1 2 3 28 28 H 1.09003 * 109.46840 * 304.23551 * 1 2 3 29 29 H 1.08996 * 109.47490 * 64.23438 * 1 2 3 30 30 H 1.09003 * 109.46927 * 239.99871 * 2 1 3 31 31 H 1.09003 * 109.47036 * 120.00691 * 2 1 3 32 32 H 1.08004 * 125.56733 * 359.97438 * 4 3 2 33 33 H 1.08005 * 126.06832 * 180.26038 * 5 4 3 34 34 H 1.08004 * 126.45723 * 180.02562 * 6 5 4 35 35 H 1.08996 * 110.36393 * 322.93122 * 11 10 8 36 36 H 1.08998 * 110.36764 * 85.25178 * 11 10 8 37 37 H 1.09002 * 111.00303 * 81.06405 * 12 11 10 38 38 H 1.09003 * 111.00402 * 204.87526 * 12 11 10 39 39 H 0.96992 * 120.00322 * 42.82939 * 15 13 12 40 40 H 0.97002 * 119.99962 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.47400 * 63.10554 * 26 24 10 42 42 H 1.09008 * 109.46689 * 183.09774 * 26 24 10 43 43 H 1.08996 * 109.47348 * 303.09964 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3496 2.1024 -1.0985 5 6 2.7573 3.3337 -0.7078 6 6 2.6802 3.3883 0.6873 7 6 2.2173 2.1624 1.1158 8 6 1.9804 1.7631 2.5072 9 8 1.4565 0.6923 2.7521 10 7 2.3429 2.5820 3.5143 11 6 3.0927 3.8430 3.3689 12 6 3.7741 4.0599 4.7430 13 6 2.6828 3.5426 5.7171 14 1 3.1302 3.1948 6.6481 15 7 1.6847 4.5832 5.9769 16 6 1.2236 4.7868 7.2501 17 1 1.5954 4.1801 8.0626 18 6 0.2776 5.7723 7.4964 19 7 -0.1758 6.5114 6.5061 20 14 -0.3520 6.0497 9.2331 21 1 0.3110 5.0959 10.1582 22 1 -0.0462 7.4405 9.6542 23 1 -1.8208 5.8338 9.2675 24 6 2.0506 2.3690 4.9393 25 1 2.4892 1.4279 5.2711 26 6 0.5371 2.3484 5.1626 27 1 -0.3633 -1.0248 0.0760 28 1 -0.3633 0.5782 0.8496 29 1 -0.3634 0.4467 -0.9254 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 2.2970 1.7527 -2.1190 33 1 3.0805 4.1327 -1.3586 34 1 2.9346 4.2321 1.3116 35 1 3.8430 3.7497 2.5838 36 1 2.4123 4.6656 3.1487 37 1 4.6846 3.4664 4.8256 38 1 3.9820 5.1162 4.9136 39 1 1.3506 5.1277 5.2471 40 1 -0.8372 7.1998 6.6781 41 1 0.1017 1.5068 4.6240 42 1 0.3283 2.2454 6.2275 43 1 0.1030 3.2784 4.7955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987533159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:33 Heat of formation + Delta-G solvation = 40.280148 kcal Electronic energy + Delta-G solvation = -24141.249607 eV Core-core repulsion = 20802.133075 eV Total energy + Delta-G solvation = -3339.116531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38060 -39.42323 -37.19709 -34.46076 -33.73752 -31.65999 -30.80495 -29.53443 -29.31336 -28.15785 -25.30130 -23.69296 -23.52271 -23.07405 -20.99853 -20.71116 -19.27309 -18.59157 -17.50178 -16.89171 -16.02484 -15.73342 -15.12439 -14.69527 -14.48910 -14.28004 -13.88075 -13.53008 -13.48437 -13.42312 -12.85349 -12.78083 -12.71880 -12.24813 -12.18729 -12.00175 -11.86907 -11.51100 -11.29982 -11.22606 -10.90599 -10.83656 -10.64143 -10.34461 -10.16824 -10.04037 -9.67188 -9.54335 -8.98235 -8.70273 -8.32540 -8.03700 -7.04448 -5.82198 -3.11557 1.64156 2.68731 2.82090 3.40763 3.47094 3.48999 3.51111 3.62837 4.54811 4.63383 4.74280 4.96415 4.98974 5.05492 5.20080 5.33409 5.38987 5.42870 5.45886 5.60229 5.63774 5.71358 5.74106 5.80831 5.92056 6.07277 6.09737 6.13489 6.22502 6.24061 6.35927 6.44334 6.61500 6.66340 6.78613 6.82994 7.04290 7.07780 7.27053 7.28134 7.66261 7.91836 8.34955 8.50323 9.47379 10.01485 10.36833 11.39844 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024467 B = 0.004054 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.121749 B = 6905.008976 C = 7182.347647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.410 5.410 4 C 0.006 3.994 5 C -0.210 4.210 6 C -0.154 4.154 7 C -0.039 4.039 8 C 0.597 3.403 9 O -0.557 6.557 10 N -0.592 5.592 11 C 0.094 3.906 12 C -0.152 4.152 13 C 0.171 3.829 14 H 0.081 0.919 15 N -0.707 5.707 16 C -0.243 4.243 17 H 0.073 0.927 18 C -0.008 4.008 19 N -0.929 5.929 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.113 3.887 25 H 0.062 0.938 26 C -0.134 4.134 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.164 0.836 33 H 0.139 0.861 34 H 0.156 0.844 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.039 0.961 42 H 0.065 0.935 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.221 -9.133 -14.393 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.084 5.084 4 C -0.129 4.129 5 C -0.234 4.234 6 C -0.180 4.180 7 C -0.153 4.153 8 C 0.387 3.613 9 O -0.438 6.438 10 N -0.324 5.324 11 C -0.028 4.028 12 C -0.192 4.192 13 C 0.058 3.942 14 H 0.099 0.901 15 N -0.346 5.346 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.736 3.264 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C 0.008 3.992 25 H 0.080 0.920 26 C -0.192 4.192 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.181 0.819 33 H 0.157 0.843 34 H 0.173 0.827 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.727 -10.099 -14.062 18.574 hybrid contribution -0.599 0.480 0.469 0.900 sum 6.128 -9.618 -13.593 17.744 Atomic orbital electron populations 1.22055 0.94040 1.03033 1.02813 1.21967 0.96071 0.79753 1.04376 1.44049 1.47496 1.11682 1.05138 1.21933 1.06311 0.93210 0.91428 1.20836 1.10008 0.97353 0.95250 1.21962 1.03870 0.96632 0.95530 1.20154 1.14088 0.93241 0.87804 1.16580 0.78612 0.83383 0.82744 1.90743 1.45647 1.22579 1.84830 1.48211 1.54517 1.22642 1.06993 1.22697 0.95042 0.86322 0.98788 1.23327 0.98371 1.02677 0.94809 1.21258 0.89204 0.88479 0.95284 0.90138 1.42344 1.46282 1.38015 1.07917 1.19301 1.18169 1.14220 0.85670 0.90955 1.24726 0.99728 0.98733 0.97302 1.69666 1.33743 1.24302 1.29980 0.86154 0.78483 0.77549 0.84197 1.20514 1.21893 1.21905 1.22681 0.97664 1.00143 0.78724 0.91965 1.21756 0.94092 1.01392 1.01950 0.90924 0.91133 0.92609 0.89773 0.87914 0.81907 0.84271 0.82718 0.90364 0.90912 0.91287 0.89407 0.77987 0.93484 0.94189 0.91580 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 10.17 37.16 0.38 -1.41 16 2 C 0.10 1.11 6.11 -4.04 -0.02 1.09 16 3 N -0.41 -5.42 2.76 -112.87 -0.31 -5.73 16 4 C 0.01 0.07 11.37 -16.91 -0.19 -0.13 16 5 C -0.21 -2.50 10.81 -39.98 -0.43 -2.93 16 6 C -0.15 -2.14 9.15 -39.12 -0.36 -2.49 16 7 C -0.04 -0.61 6.83 -81.98 -0.56 -1.17 16 8 C 0.60 10.63 7.55 -12.86 -0.10 10.53 16 9 O -0.56 -10.95 13.75 5.19 0.07 -10.88 16 10 N -0.59 -10.15 3.06 -164.53 -0.50 -10.65 16 11 C 0.09 1.40 4.99 -2.53 -0.01 1.39 16 12 C -0.15 -2.30 6.76 -24.58 -0.17 -2.46 16 13 C 0.17 3.17 3.57 -66.09 -0.24 2.93 16 14 H 0.08 1.47 7.92 -51.93 -0.41 1.06 16 15 N -0.71 -16.29 3.44 -51.64 -0.18 -16.47 16 16 C -0.24 -6.30 9.76 -15.06 -0.15 -6.45 16 17 H 0.07 1.83 7.73 -52.49 -0.41 1.43 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 20 Si 0.90 21.75 29.55 -169.99 -5.02 16.73 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.11 2.08 3.40 -66.94 -0.23 1.86 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 26 C -0.13 -2.75 8.38 37.16 0.31 -2.44 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.01 7.79 -51.93 -0.40 0.61 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.10 1.34 6.70 -51.93 -0.35 0.99 16 32 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 34 H 0.16 1.99 4.77 -52.48 -0.25 1.74 16 35 H 0.08 1.00 5.94 -51.93 -0.31 0.69 16 36 H 0.07 1.14 7.71 -51.93 -0.40 0.74 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.39 9.61 7.79 -40.82 -0.32 9.30 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 41 H 0.04 0.82 7.14 -51.93 -0.37 0.45 16 42 H 0.07 1.40 8.07 -51.92 -0.42 0.98 16 43 H 0.07 1.55 7.35 -51.93 -0.38 1.17 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -30.70 343.45 -8.44 -39.14 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.53 Total: 10.99 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.86 Total: -2.01 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.27 Total: -59.14 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.07 Total: -10.88 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.70 -8.44 -39.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987533159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.416 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds