Wall clock time and date at job start Tue Mar 31 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47461 * 2 1 4 4 C 1.35524 * 125.67786 * 266.26376 * 3 2 1 5 5 C 1.35453 * 108.87332 * 179.97438 * 4 3 2 6 6 C 1.39834 * 107.86285 * 0.02562 * 5 4 3 7 7 C 1.37653 * 125.67669 * 86.25898 * 3 2 1 8 8 C 1.46678 * 126.23403 * 0.03858 * 7 3 2 9 9 O 1.21699 * 119.99664 * 353.38097 * 8 7 3 10 10 N 1.34771 * 119.99995 * 173.38847 * 8 7 3 11 11 C 1.47424 * 125.65033 * 354.07011 * 10 8 7 12 12 C 1.54911 * 104.83300 * 204.09353 * 11 10 8 13 13 C 1.55158 * 101.58225 * 322.98896 * 12 11 10 14 14 H 1.08998 * 110.72249 * 153.86737 * 13 12 11 15 15 N 1.46503 * 110.71545 * 277.14245 * 13 12 11 16 16 C 1.36940 * 119.99307 * 222.82515 * 15 13 12 17 17 H 1.08001 * 120.00350 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99812 * 180.02562 * 16 15 13 19 19 N 1.31618 * 119.99832 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99970 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47344 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46933 * 120.00027 * 20 18 16 23 23 H 1.48499 * 109.47130 * 239.99359 * 20 18 16 24 24 C 1.47025 * 125.64883 * 173.76230 * 10 8 7 25 25 H 1.09002 * 109.88466 * 59.55638 * 24 10 8 26 26 C 1.53003 * 109.87870 * 298.39172 * 24 10 8 27 27 H 1.08996 * 109.47141 * 184.23870 * 1 2 3 28 28 H 1.09003 * 109.46840 * 304.23551 * 1 2 3 29 29 H 1.08996 * 109.47490 * 64.23438 * 1 2 3 30 30 H 1.09003 * 109.46927 * 239.99871 * 2 1 3 31 31 H 1.09003 * 109.47036 * 120.00691 * 2 1 3 32 32 H 1.08004 * 125.56733 * 359.97438 * 4 3 2 33 33 H 1.08005 * 126.06832 * 180.26038 * 5 4 3 34 34 H 1.08004 * 126.45723 * 180.02562 * 6 5 4 35 35 H 1.08996 * 110.36393 * 322.93122 * 11 10 8 36 36 H 1.08998 * 110.36764 * 85.25178 * 11 10 8 37 37 H 1.09002 * 111.00303 * 81.06405 * 12 11 10 38 38 H 1.09003 * 111.00402 * 204.87526 * 12 11 10 39 39 H 0.96992 * 120.00322 * 42.82939 * 15 13 12 40 40 H 0.97002 * 119.99962 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.47400 * 63.10554 * 26 24 10 42 42 H 1.09008 * 109.46689 * 183.09774 * 26 24 10 43 43 H 1.08996 * 109.47348 * 303.09964 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3496 2.1024 -1.0985 5 6 2.7573 3.3337 -0.7078 6 6 2.6802 3.3883 0.6873 7 6 2.2173 2.1624 1.1158 8 6 1.9804 1.7631 2.5072 9 8 1.4565 0.6923 2.7521 10 7 2.3429 2.5820 3.5143 11 6 3.0927 3.8430 3.3689 12 6 3.7741 4.0599 4.7430 13 6 2.6828 3.5426 5.7171 14 1 3.1302 3.1948 6.6481 15 7 1.6847 4.5832 5.9769 16 6 1.2236 4.7868 7.2501 17 1 1.5954 4.1801 8.0626 18 6 0.2776 5.7723 7.4964 19 7 -0.1758 6.5114 6.5061 20 14 -0.3520 6.0497 9.2331 21 1 0.3110 5.0959 10.1582 22 1 -0.0462 7.4405 9.6542 23 1 -1.8208 5.8338 9.2675 24 6 2.0506 2.3690 4.9393 25 1 2.4892 1.4279 5.2711 26 6 0.5371 2.3484 5.1626 27 1 -0.3633 -1.0248 0.0760 28 1 -0.3633 0.5782 0.8496 29 1 -0.3634 0.4467 -0.9254 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 2.2970 1.7527 -2.1190 33 1 3.0805 4.1327 -1.3586 34 1 2.9346 4.2321 1.3116 35 1 3.8430 3.7497 2.5838 36 1 2.4123 4.6656 3.1487 37 1 4.6846 3.4664 4.8256 38 1 3.9820 5.1162 4.9136 39 1 1.3506 5.1277 5.2471 40 1 -0.8372 7.1998 6.6781 41 1 0.1017 1.5068 4.6240 42 1 0.3283 2.2454 6.2275 43 1 0.1030 3.2784 4.7955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987533159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:32 Heat of formation + Delta-G solvation = 22.465852 kcal Electronic energy + Delta-G solvation = -24142.022092 eV Core-core repulsion = 20802.133075 eV Total energy + Delta-G solvation = -3339.889017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.41272 -40.76697 -38.63048 -35.90570 -35.00086 -33.35171 -32.27982 -31.05022 -30.24691 -29.48754 -26.88096 -25.38936 -24.79161 -24.22178 -22.25300 -21.76775 -20.57953 -19.83757 -19.36563 -18.06372 -17.47635 -17.00695 -16.46668 -16.07675 -15.79982 -15.41580 -15.30867 -15.11358 -14.92294 -14.66197 -14.36910 -14.11387 -13.94414 -13.33115 -13.20443 -13.15089 -13.09678 -12.94661 -12.85449 -12.80469 -12.42252 -12.32723 -12.13940 -12.10057 -11.87840 -11.59895 -11.44646 -10.99155 -10.87117 -9.72760 -9.61289 -9.10126 -8.99344 -7.90657 -5.17990 0.52879 1.49084 1.50800 1.59204 1.64187 1.88005 2.32738 2.39751 2.58639 3.39397 3.58758 3.72927 3.81730 3.90051 4.08901 4.11504 4.19057 4.26082 4.36243 4.37767 4.47111 4.50109 4.50474 4.62325 4.71966 4.76112 4.80138 4.87316 4.98301 5.08603 5.15083 5.20191 5.24033 5.30780 5.32537 5.45840 5.49656 5.59108 5.90943 6.05089 6.30286 6.39991 6.58832 7.16214 7.38338 8.10831 8.35064 9.32575 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024467 B = 0.004054 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.121749 B = 6905.008976 C = 7182.347647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.097 3.903 3 N -0.416 5.416 4 C 0.026 3.974 5 C -0.222 4.222 6 C -0.154 4.154 7 C -0.082 4.082 8 C 0.589 3.411 9 O -0.587 6.587 10 N -0.595 5.595 11 C 0.098 3.902 12 C -0.137 4.137 13 C 0.164 3.836 14 H 0.087 0.913 15 N -0.715 5.715 16 C -0.231 4.231 17 H 0.080 0.920 18 C -0.070 4.070 19 N -0.967 5.967 20 Si 0.963 3.037 21 H -0.265 1.265 22 H -0.296 1.296 23 H -0.302 1.302 24 C 0.119 3.881 25 H 0.069 0.931 26 C -0.117 4.117 27 H 0.088 0.912 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.125 0.875 31 H 0.078 0.922 32 H 0.206 0.794 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.374 0.626 40 H 0.248 0.752 41 H 0.032 0.968 42 H 0.054 0.946 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.021 -9.865 -16.250 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.023 4.023 3 N -0.089 5.089 4 C -0.110 4.110 5 C -0.245 4.245 6 C -0.180 4.180 7 C -0.194 4.194 8 C 0.381 3.619 9 O -0.470 6.470 10 N -0.327 5.327 11 C -0.024 4.024 12 C -0.176 4.176 13 C 0.053 3.947 14 H 0.105 0.895 15 N -0.352 5.352 16 C -0.363 4.363 17 H 0.098 0.902 18 C -0.262 4.262 19 N -0.618 5.618 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.223 1.223 23 H -0.229 1.229 24 C 0.013 3.987 25 H 0.087 0.913 26 C -0.176 4.176 27 H 0.107 0.893 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.143 0.857 31 H 0.097 0.903 32 H 0.223 0.777 33 H 0.182 0.818 34 H 0.176 0.824 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.207 0.793 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.578 -10.863 -15.908 21.087 hybrid contribution -1.129 0.617 0.929 1.587 sum 7.449 -10.246 -14.979 19.618 Atomic orbital electron populations 1.21999 0.94219 1.03449 1.01620 1.22086 0.95879 0.79158 1.05193 1.44281 1.47355 1.12263 1.05033 1.22685 1.03294 0.92552 0.92462 1.21206 1.10201 0.98581 0.94498 1.22175 1.02937 0.95998 0.96926 1.19958 1.17419 0.94764 0.87285 1.17031 0.77971 0.82984 0.83904 1.90712 1.46980 1.23881 1.85463 1.48223 1.54852 1.23343 1.06276 1.22768 0.95100 0.84917 0.99576 1.23225 0.98064 1.03029 0.93281 1.21473 0.89182 0.87451 0.96584 0.89480 1.42432 1.47283 1.38855 1.06641 1.19665 1.16791 1.12897 0.86900 0.90248 1.25406 1.00941 0.99517 1.00352 1.69810 1.34911 1.25369 1.31710 0.85217 0.77245 0.77297 0.80882 1.18942 1.22294 1.22943 1.22441 0.95775 1.00327 0.80118 0.91290 1.21555 0.95972 0.99327 1.00731 0.89289 0.95360 0.91038 0.85651 0.90319 0.77720 0.81755 0.82387 0.87637 0.92161 0.88356 0.89382 0.79324 0.94284 0.94890 0.92704 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 10.17 71.98 0.73 -2.56 16 2 C 0.10 2.02 6.11 86.38 0.53 2.55 16 3 N -0.42 -10.18 2.76 -511.02 -1.41 -11.60 16 4 C 0.03 0.47 11.37 83.48 0.95 1.42 16 5 C -0.22 -4.55 10.81 22.01 0.24 -4.31 16 6 C -0.15 -4.01 9.15 22.57 0.21 -3.81 16 7 C -0.08 -2.48 6.83 40.35 0.28 -2.21 16 8 C 0.59 21.28 7.55 86.45 0.65 21.93 16 9 O -0.59 -23.86 13.75 -4.35 -0.06 -23.92 16 10 N -0.60 -20.45 3.06 -792.69 -2.43 -22.88 16 11 C 0.10 2.82 4.99 86.86 0.43 3.26 16 12 C -0.14 -3.89 6.76 31.99 0.22 -3.67 16 13 C 0.16 5.99 3.57 46.18 0.17 6.16 16 14 H 0.09 3.07 7.92 -2.39 -0.02 3.05 16 15 N -0.71 -33.30 3.44 -317.30 -1.09 -34.39 16 16 C -0.23 -12.03 9.76 84.03 0.82 -11.21 16 17 H 0.08 3.97 7.73 -2.91 -0.02 3.94 16 18 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 19 N -0.97 -57.78 13.06 21.65 0.28 -57.50 16 20 Si 0.96 45.35 29.55 68.60 2.03 47.37 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 24 C 0.12 4.42 3.40 45.35 0.15 4.57 16 25 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 26 C -0.12 -5.03 8.38 71.98 0.60 -4.43 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.03 0.83 7.79 -2.39 -0.02 0.81 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.13 1.54 8.13 -2.39 -0.02 1.52 16 31 H 0.08 2.04 6.70 -2.39 -0.02 2.02 16 32 H 0.21 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.16 3.84 4.77 -2.91 -0.01 3.83 16 35 H 0.11 2.48 5.94 -2.39 -0.01 2.47 16 36 H 0.06 1.90 7.71 -2.39 -0.02 1.88 16 37 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.37 19.17 7.79 -92.71 -0.72 18.44 16 40 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.03 1.41 7.14 -2.39 -0.02 1.40 16 42 H 0.05 2.41 8.07 -2.38 -0.02 2.39 16 43 H 0.04 1.80 7.35 -2.39 -0.02 1.78 16 Total: -1.00 -69.01 343.45 4.05 -64.97 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.29 Total: 33.66 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 6.44 Total: 4.28 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -4.65 Total: -126.36 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.06 Total: -23.92 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -69.01 4.05 -64.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987533159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.432 kcal (2) G-P(sol) polarization free energy of solvation -69.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds