Wall clock time and date at job start Tue Mar 31 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47168 * 2 1 4 4 C 1.35524 * 125.68132 * 260.68428 * 3 2 1 5 5 C 1.35451 * 108.87733 * 179.97438 * 4 3 2 6 6 C 1.39834 * 107.86234 * 0.02562 * 5 4 3 7 7 C 1.37660 * 125.67629 * 80.37806 * 3 2 1 8 8 C 1.46670 * 126.23230 * 0.02562 * 7 3 2 9 9 O 1.21691 * 120.00429 * 16.00234 * 8 7 3 10 10 N 1.34783 * 119.99646 * 196.00779 * 8 7 3 11 11 C 1.48220 * 119.96918 * 176.29265 * 10 8 7 12 12 C 1.47717 * 110.06657 * 102.59162 * 11 10 8 13 13 C 1.53789 * 111.83536 * 58.36800 * 12 11 10 14 14 N 1.43469 * 107.96119 * 281.59630 * 13 12 11 15 15 C 1.36930 * 118.94178 * 273.63215 * 14 13 12 16 16 H 1.07999 * 120.00193 * 27.97083 * 15 14 13 17 17 C 1.38810 * 119.99997 * 207.96812 * 15 14 13 18 18 N 1.31620 * 119.99958 * 11.32400 * 17 15 14 19 19 Si 1.86807 * 119.99994 * 191.32085 * 17 15 14 20 20 H 1.48498 * 109.47152 * 90.00371 * 19 17 15 21 21 H 1.48500 * 109.46926 * 210.00094 * 19 17 15 22 22 H 1.48500 * 109.47127 * 330.00231 * 19 17 15 23 23 C 1.48858 * 122.11577 * 93.65412 * 14 13 12 24 24 C 1.43614 * 119.97075 * 356.56491 * 10 8 7 25 25 H 1.08992 * 109.47271 * 175.05249 * 1 2 3 26 26 H 1.09005 * 109.47274 * 295.05948 * 1 2 3 27 27 H 1.08999 * 109.47044 * 55.05156 * 1 2 3 28 28 H 1.09003 * 109.46895 * 120.00014 * 2 1 3 29 29 H 1.08996 * 109.47138 * 239.99584 * 2 1 3 30 30 H 1.08007 * 125.56310 * 359.96086 * 4 3 2 31 31 H 1.07995 * 126.06887 * 180.02562 * 5 4 3 32 32 H 1.08004 * 126.45501 * 179.97438 * 6 5 4 33 33 H 1.08993 * 109.32218 * 222.78264 * 11 10 8 34 34 H 1.09007 * 109.32233 * 342.24394 * 11 10 8 35 35 H 1.09001 * 109.06349 * 297.72367 * 12 11 10 36 36 H 1.08998 * 108.95643 * 178.94299 * 12 11 10 37 37 H 1.09003 * 109.76496 * 161.98186 * 13 12 11 38 38 H 1.09001 * 109.81118 * 41.23781 * 13 12 11 39 39 H 0.97008 * 119.99906 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.47850 * 200.61673 * 23 14 13 41 41 H 1.09001 * 109.49085 * 80.59385 * 23 14 13 42 42 H 1.09003 * 108.87225 * 31.42971 * 24 10 8 43 43 H 1.09007 * 108.87457 * 149.96084 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4499 2.0671 -1.0863 5 6 2.8218 3.3109 -0.7000 6 6 2.6172 3.4106 0.6797 7 6 2.1098 2.2004 1.1025 8 6 1.7387 1.8485 2.4772 9 8 1.5837 0.6817 2.7859 10 7 1.5693 2.8176 3.3985 11 6 1.1146 2.4685 4.7653 12 6 2.2569 2.4946 5.7016 13 6 2.9409 3.8717 5.7312 14 7 3.7749 3.9764 4.5685 15 6 5.0530 3.4880 4.6237 16 1 5.2912 2.6726 5.2906 17 6 6.0424 4.0408 3.8223 18 7 5.8160 5.1669 3.1796 19 14 7.6954 3.1865 3.6560 20 1 7.6493 2.2369 2.5153 21 1 8.7540 4.1995 3.4143 22 1 7.9969 2.4440 4.9063 23 6 3.2958 4.5994 3.3044 24 6 1.8239 4.1882 3.0532 25 1 -0.3633 -1.0238 -0.0886 26 1 -0.3634 0.4353 0.9310 27 1 -0.3633 0.5887 -0.8423 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 2.4907 1.6843 -2.0954 31 1 3.2078 4.0877 -1.3433 32 1 2.8153 4.2744 1.2971 33 1 0.3635 3.1882 5.0904 34 1 0.6744 1.4713 4.7553 35 1 2.9849 1.7430 5.3961 36 1 1.8996 2.2541 6.7029 37 1 3.5497 3.9616 6.6308 38 1 2.1872 4.6589 5.7162 39 1 6.5074 5.5530 2.6193 40 1 3.9149 4.2594 2.4742 41 1 3.3613 5.6844 3.3860 42 1 1.5918 4.3350 1.9984 43 1 1.1738 4.8286 3.6494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989670468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:36 Heat of formation + Delta-G solvation = 54.467021 kcal Electronic energy + Delta-G solvation = -25200.018695 eV Core-core repulsion = 21861.517353 eV Total energy + Delta-G solvation = -3338.501342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.50382 -40.54211 -38.50534 -36.10025 -35.18195 -34.24107 -32.82998 -30.29799 -30.11444 -29.31299 -27.13218 -25.48239 -24.44612 -24.19850 -22.16760 -21.59564 -21.19048 -19.86847 -18.57669 -18.07019 -17.47929 -17.11297 -16.57168 -16.24439 -15.93286 -15.42305 -15.41346 -15.30267 -14.84068 -14.52751 -14.41618 -13.95116 -13.85082 -13.66107 -13.35757 -13.16382 -13.08790 -12.90090 -12.85219 -12.62555 -12.42161 -12.15475 -12.08134 -11.92472 -11.70822 -11.65803 -11.42113 -10.85641 -10.50608 -9.62249 -9.52711 -9.03785 -8.58357 -7.83373 -5.29511 0.58665 1.39913 1.43138 1.49404 1.72692 1.89400 2.34225 2.47458 2.50933 3.30046 3.62630 3.78992 3.82018 4.10694 4.11725 4.20563 4.23102 4.32836 4.39133 4.49445 4.51704 4.55050 4.59706 4.74199 4.78265 4.83306 4.90121 4.93631 5.04282 5.14087 5.22776 5.24183 5.32015 5.38862 5.49345 5.62051 5.73661 5.79142 5.94344 6.08127 6.43453 6.44371 6.54307 7.20862 7.23258 7.98036 8.36704 9.20491 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.007160 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.336456 B = 3909.718235 C = 4804.250529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.092 3.908 3 N -0.416 5.416 4 C 0.025 3.975 5 C -0.229 4.229 6 C -0.165 4.165 7 C -0.079 4.079 8 C 0.582 3.418 9 O -0.594 6.594 10 N -0.573 5.573 11 C 0.129 3.871 12 C -0.154 4.154 13 C 0.158 3.842 14 N -0.603 5.603 15 C -0.259 4.259 16 H 0.047 0.953 17 C -0.036 4.036 18 N -0.924 5.924 19 Si 0.949 3.051 20 H -0.296 1.296 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.163 3.837 24 C 0.063 3.937 25 H 0.095 0.905 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.208 0.792 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.024 0.976 36 H 0.088 0.912 37 H 0.037 0.963 38 H 0.059 0.941 39 H 0.250 0.750 40 H 0.059 0.941 41 H 0.025 0.975 42 H 0.107 0.893 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.697 -4.514 -7.416 15.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 N -0.090 5.090 4 C -0.110 4.110 5 C -0.252 4.252 6 C -0.191 4.191 7 C -0.192 4.192 8 C 0.373 3.627 9 O -0.478 6.478 10 N -0.302 5.302 11 C 0.009 3.991 12 C -0.195 4.195 13 C 0.030 3.970 14 N -0.325 5.325 15 C -0.390 4.390 16 H 0.065 0.935 17 C -0.232 4.232 18 N -0.570 5.570 19 Si 0.779 3.221 20 H -0.223 1.223 21 H -0.212 1.212 22 H -0.202 1.202 23 C 0.038 3.962 24 C -0.062 4.062 25 H 0.114 0.886 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.141 0.859 30 H 0.225 0.775 31 H 0.175 0.825 32 H 0.181 0.819 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.106 0.894 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.043 0.957 42 H 0.125 0.875 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.845 -5.363 -7.263 15.701 hybrid contribution 1.549 -0.296 0.160 1.585 sum -11.296 -5.659 -7.104 14.494 Atomic orbital electron populations 1.21986 0.93188 1.03985 1.01688 1.22144 0.96664 0.79042 1.05022 1.44247 1.46933 1.11839 1.05965 1.22610 1.02760 0.92801 0.92832 1.21193 1.10286 0.98709 0.95061 1.22634 1.02142 0.97254 0.97099 1.20012 1.16890 0.93629 0.88664 1.17297 0.76194 0.84820 0.84395 1.90653 1.55535 1.19378 1.82230 1.47133 1.64581 1.06982 1.11478 1.20847 0.96452 1.02071 0.79771 1.21787 0.97826 1.00375 0.99526 1.20460 0.93137 0.94201 0.89167 1.43793 1.10536 1.69647 1.08530 1.19261 0.86630 1.10857 1.22288 0.93488 1.25548 1.00022 0.96484 1.01196 1.70077 1.34059 1.18695 1.34215 0.85546 0.81248 0.77741 0.77582 1.22339 1.21229 1.20157 1.21918 0.90817 0.94779 0.88674 1.22734 0.98300 0.81717 1.03407 0.88636 0.94737 0.91132 0.90741 0.85944 0.77521 0.82490 0.81870 0.88177 0.90752 0.95727 0.89357 0.94491 0.92311 0.94045 0.92235 0.95691 0.87526 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 10.23 71.98 0.74 -2.52 16 2 C 0.09 2.31 6.22 86.38 0.54 2.85 16 3 N -0.42 -12.88 2.76 -511.02 -1.41 -14.29 16 4 C 0.03 0.65 11.36 83.48 0.95 1.60 16 5 C -0.23 -6.94 10.81 22.01 0.24 -6.70 16 6 C -0.17 -6.10 7.90 22.57 0.18 -5.92 16 7 C -0.08 -3.02 6.65 40.34 0.27 -2.76 16 8 C 0.58 24.10 7.60 86.44 0.66 24.76 16 9 O -0.59 -26.58 14.33 -4.32 -0.06 -26.64 16 10 N -0.57 -21.60 2.45 -834.93 -2.04 -23.65 16 11 C 0.13 4.26 5.72 84.39 0.48 4.74 16 12 C -0.15 -5.59 5.65 29.21 0.17 -5.42 16 13 C 0.16 6.37 5.63 87.21 0.49 6.86 16 14 N -0.60 -29.78 2.53 -698.08 -1.77 -31.54 16 15 C -0.26 -14.65 9.26 84.03 0.78 -13.87 16 16 H 0.05 2.73 7.85 -2.91 -0.02 2.71 16 17 C -0.04 -2.06 5.01 84.86 0.43 -1.64 16 18 N -0.92 -53.40 10.90 21.65 0.24 -53.16 16 19 Si 0.95 46.88 29.57 68.60 2.03 48.91 16 20 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 23 C 0.16 7.49 4.37 86.56 0.38 7.87 16 24 C 0.06 2.26 4.71 87.55 0.41 2.67 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.03 0.95 8.06 -2.38 -0.02 0.93 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 2.35 6.65 -2.39 -0.02 2.34 16 29 H 0.12 2.11 8.11 -2.39 -0.02 2.09 16 30 H 0.21 3.29 8.06 -2.91 -0.02 3.27 16 31 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 32 H 0.16 6.37 3.10 -2.91 -0.01 6.36 16 33 H 0.10 2.56 8.05 -2.39 -0.02 2.54 16 34 H 0.07 2.50 7.17 -2.38 -0.02 2.49 16 35 H 0.02 1.09 7.91 -2.39 -0.02 1.07 16 36 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.04 1.54 8.02 -2.39 -0.02 1.52 16 38 H 0.06 2.08 7.59 -2.39 -0.02 2.06 16 39 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 40 H 0.06 3.10 4.55 -2.39 -0.01 3.09 16 41 H 0.03 1.22 7.96 -2.39 -0.02 1.20 16 42 H 0.11 3.60 4.34 -2.39 -0.01 3.59 16 43 H 0.09 2.62 7.72 -2.38 -0.02 2.60 16 Total: -1.00 -71.84 330.92 4.68 -67.16 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 1.01 Total: 20.70 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.70 Total: 12.52 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -4.99 Total: -122.64 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.06 Total: -26.64 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -71.84 4.68 -67.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989670468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.628 kcal (2) G-P(sol) polarization free energy of solvation -71.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds