Wall clock time and date at job start Tue Mar 31 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.46771 * 2 1 4 4 C 1.35534 * 125.67961 * 265.64373 * 3 2 1 5 5 C 1.35448 * 108.87524 * 180.26427 * 4 3 2 6 6 C 1.39840 * 107.86318 * 359.76870 * 5 4 3 7 7 C 1.37653 * 125.67824 * 85.51620 * 3 2 1 8 8 C 1.46679 * 126.23525 * 359.97438 * 7 3 2 9 9 O 1.21695 * 119.99451 * 5.55253 * 8 7 3 10 10 N 1.34770 * 120.00049 * 185.54885 * 8 7 3 11 11 C 1.47023 * 125.65279 * 354.98996 * 10 8 7 12 12 C 1.54322 * 107.27279 * 178.97497 * 11 10 8 13 13 H 1.09002 * 110.72025 * 96.34906 * 12 11 10 14 14 N 1.46496 * 110.71928 * 219.44232 * 12 11 10 15 15 C 1.36943 * 120.00268 * 271.15968 * 14 12 11 16 16 H 1.08000 * 119.99430 * 0.02562 * 15 14 12 17 17 C 1.38810 * 120.00108 * 179.72788 * 15 14 12 18 18 N 1.31625 * 119.99835 * 0.27212 * 17 15 14 19 19 Si 1.86798 * 120.00018 * 180.27551 * 17 15 14 20 20 H 1.48505 * 109.47170 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47233 * 119.99633 * 19 17 15 22 22 H 1.48498 * 109.47058 * 239.99733 * 19 17 15 23 23 C 1.55156 * 103.10319 * 337.89720 * 12 11 10 24 24 C 1.47422 * 125.64690 * 175.03158 * 10 8 7 25 25 H 1.09003 * 110.36933 * 85.14488 * 24 10 8 26 26 C 1.52997 * 110.36840 * 322.93182 * 24 10 8 27 27 H 1.09005 * 109.46539 * 175.01935 * 1 2 3 28 28 H 1.08993 * 109.47460 * 295.01620 * 1 2 3 29 29 H 1.08994 * 109.46925 * 55.02144 * 1 2 3 30 30 H 1.08998 * 109.47910 * 240.00231 * 2 1 3 31 31 H 1.08999 * 109.47718 * 119.99389 * 2 1 3 32 32 H 1.08005 * 125.56328 * 0.06752 * 4 3 2 33 33 H 1.08001 * 126.07332 * 179.74765 * 5 4 3 34 34 H 1.08003 * 126.45331 * 180.02562 * 6 5 4 35 35 H 1.09006 * 109.88081 * 59.55454 * 11 10 8 36 36 H 1.09005 * 110.01040 * 298.46780 * 11 10 8 37 37 H 0.96996 * 120.00332 * 91.15919 * 14 12 11 38 38 H 0.97002 * 119.99558 * 180.02562 * 18 17 15 39 39 H 1.08999 * 111.00333 * 153.49111 * 23 12 11 40 40 H 1.08997 * 111.00238 * 277.34129 * 23 12 11 41 41 H 1.09001 * 109.47242 * 61.45280 * 26 24 10 42 42 H 1.09004 * 109.47555 * 181.45245 * 26 24 10 43 43 H 1.09001 * 109.47016 * 301.45531 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3605 2.0987 -1.0978 5 6 2.7702 3.3291 -0.7069 6 6 2.6772 3.3894 0.6871 7 6 2.2034 2.1673 1.1147 8 6 1.9483 1.7745 2.5047 9 8 1.6298 0.6291 2.7646 10 7 2.0668 2.6820 3.4940 11 6 2.5421 4.0643 3.3365 12 6 2.4833 4.7304 4.7273 13 1 3.4563 4.6880 5.2167 14 7 2.0196 6.1159 4.6193 15 6 2.9219 7.1261 4.4175 16 1 3.9752 6.9014 4.3376 17 6 2.4820 8.4383 4.3095 18 7 1.1982 8.7120 4.4063 19 14 3.7119 9.8154 4.0265 20 1 5.0825 9.2482 3.9555 21 1 3.3955 10.5074 2.7514 22 1 3.6356 10.7854 5.1483 23 6 1.4472 3.8626 5.4894 24 6 1.7422 2.4527 4.9137 25 1 2.5911 2.0037 5.4293 26 6 0.5090 1.5560 5.0398 27 1 -0.3632 -1.0239 -0.0892 28 1 -0.3634 0.4345 0.9312 29 1 -0.3633 0.5891 -0.8420 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 2.3170 1.7457 -2.1176 33 1 3.1088 4.1228 -1.3564 34 1 2.9289 4.2343 1.3111 35 1 1.8970 4.6011 2.6408 36 1 3.5678 4.0664 2.9675 37 1 1.0736 6.3177 4.6906 38 1 0.8908 9.6289 4.3305 39 1 1.6261 3.8943 6.5641 40 1 0.4292 4.1738 5.2551 41 1 0.7157 0.5877 4.5839 42 1 0.2668 1.4172 6.0935 43 1 -0.3342 2.0242 4.5318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989802158.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:40 Heat of formation + Delta-G solvation = 37.359345 kcal Electronic energy + Delta-G solvation = -23974.712778 eV Core-core repulsion = 20635.469591 eV Total energy + Delta-G solvation = -3339.243187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.32940 -39.47159 -37.17070 -34.36951 -33.99844 -31.93780 -31.39432 -29.28223 -28.77001 -28.34860 -25.55105 -24.08271 -23.49568 -22.74905 -20.90709 -20.36779 -19.88485 -18.69016 -17.28185 -16.81884 -16.28323 -15.76277 -15.12207 -14.89908 -14.44280 -14.37831 -13.85567 -13.68030 -13.56288 -13.30422 -13.10150 -12.71777 -12.41764 -12.33687 -12.22875 -12.03930 -11.89487 -11.85984 -11.65205 -11.25917 -11.19421 -10.95815 -10.66151 -10.60924 -10.29127 -10.01893 -9.75295 -9.48425 -8.98869 -8.61985 -8.35291 -8.01985 -7.09102 -5.84775 -3.15745 1.66309 2.68599 2.90792 3.39888 3.44012 3.47132 3.48286 3.62141 4.51940 4.64974 4.70833 4.95888 5.01073 5.10274 5.20545 5.21331 5.24723 5.43879 5.48946 5.51935 5.59091 5.63068 5.68954 5.78949 5.83658 5.89490 5.99774 6.09720 6.14854 6.20931 6.28574 6.34500 6.43432 6.47140 6.53668 6.69621 6.86190 6.97668 7.14763 7.34183 7.64360 7.83071 8.32403 8.42945 9.44801 9.98421 10.33283 11.37229 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.004658 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.310701 B = 6010.261013 C = 7216.161707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.412 5.412 4 C 0.007 3.993 5 C -0.209 4.209 6 C -0.146 4.146 7 C -0.048 4.048 8 C 0.602 3.398 9 O -0.562 6.562 10 N -0.596 5.596 11 C 0.067 3.933 12 C 0.170 3.830 13 H 0.067 0.933 14 N -0.713 5.713 15 C -0.249 4.249 16 H 0.074 0.926 17 C -0.007 4.007 18 N -0.929 5.929 19 Si 0.907 3.093 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.137 4.137 24 C 0.141 3.859 25 H 0.073 0.927 26 C -0.163 4.163 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.164 0.836 33 H 0.140 0.860 34 H 0.162 0.838 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.387 0.613 38 H 0.256 0.744 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 -16.163 -6.972 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.086 5.086 4 C -0.127 4.127 5 C -0.234 4.234 6 C -0.172 4.172 7 C -0.161 4.161 8 C 0.393 3.607 9 O -0.445 6.445 10 N -0.328 5.328 11 C -0.058 4.058 12 C 0.058 3.942 13 H 0.085 0.915 14 N -0.352 5.352 15 C -0.379 4.379 16 H 0.092 0.908 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.738 3.262 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.175 4.175 24 C 0.038 3.962 25 H 0.091 0.909 26 C -0.221 4.221 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.181 0.819 33 H 0.158 0.842 34 H 0.179 0.821 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.221 0.779 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.193 -17.032 -6.861 18.363 hybrid contribution 0.330 1.062 -0.433 1.193 sum 0.523 -15.970 -7.294 17.565 Atomic orbital electron populations 1.22069 0.94321 1.02558 1.03085 1.21989 0.95800 0.79990 1.04627 1.43995 1.47945 1.11481 1.05179 1.21938 1.06127 0.93279 0.91388 1.20891 1.09653 0.97381 0.95439 1.22229 1.02554 0.96642 0.95762 1.20013 1.15188 0.93167 0.87698 1.16578 0.77246 0.83984 0.82910 1.90664 1.50996 1.18800 1.83995 1.48194 1.64012 1.13194 1.07442 1.23681 0.98940 0.80199 1.03015 1.21220 0.96394 0.85566 0.91032 0.91490 1.42388 1.07563 0.99362 1.85933 1.19306 0.89846 0.86527 1.42270 0.90833 1.24762 0.95985 0.97399 1.02265 1.69676 1.12561 1.18937 1.56453 0.86129 0.80288 0.82386 0.77427 1.20412 1.21761 1.21830 1.23200 1.01032 0.93035 1.00277 1.21885 0.97459 0.96432 0.80468 0.90876 1.22142 0.96847 1.01533 1.01572 0.91009 0.91491 0.92423 0.89815 0.87572 0.81908 0.84187 0.82101 0.90026 0.91723 0.77851 0.93399 0.90037 0.90485 0.89934 0.92201 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 10.24 37.16 0.38 -1.32 16 2 C 0.10 1.08 6.21 -4.04 -0.03 1.05 16 3 N -0.41 -5.63 2.76 -112.87 -0.31 -5.94 16 4 C 0.01 0.09 11.37 -16.91 -0.19 -0.10 16 5 C -0.21 -2.87 10.81 -39.98 -0.43 -3.30 16 6 C -0.15 -2.32 9.32 -39.12 -0.36 -2.68 16 7 C -0.05 -0.78 6.86 -81.98 -0.56 -1.34 16 8 C 0.60 10.29 7.53 -12.86 -0.10 10.19 16 9 O -0.56 -9.98 12.53 5.19 0.07 -9.91 16 10 N -0.60 -9.83 3.24 -164.44 -0.53 -10.36 16 11 C 0.07 1.17 4.75 -3.06 -0.01 1.15 16 12 C 0.17 3.15 3.59 -66.10 -0.24 2.91 16 13 H 0.07 1.24 8.11 -51.93 -0.42 0.81 16 14 N -0.71 -16.68 5.16 -51.65 -0.27 -16.94 16 15 C -0.25 -6.49 9.97 -15.06 -0.15 -6.64 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 18 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 19 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 C -0.14 -2.14 6.15 -24.47 -0.15 -2.29 16 24 C 0.14 2.10 3.74 -66.30 -0.25 1.85 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 C -0.16 -2.29 8.77 37.16 0.33 -1.97 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.11 1.34 6.47 -51.93 -0.34 1.01 16 32 H 0.16 1.39 8.06 -52.48 -0.42 0.96 16 33 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.16 2.63 4.43 -52.48 -0.23 2.40 16 35 H 0.08 1.56 6.61 -51.93 -0.34 1.22 16 36 H 0.06 1.09 7.11 -51.93 -0.37 0.72 16 37 H 0.39 9.74 7.73 -40.82 -0.32 9.43 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.28 7.92 -51.93 -0.41 0.86 16 41 H 0.08 1.27 5.93 -51.93 -0.31 0.96 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 344.09 15.07 5.19 5.19 Total: -1.00 -30.17 344.09 -8.53 -38.71 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -6.51 Total: 11.80 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -1.86 Total: -2.78 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -0.39 Total: -59.52 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.17 -8.53 -38.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989802158.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.065 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds