Wall clock time and date at job start Tue Mar 31 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.46771 * 2 1 4 4 C 1.35534 * 125.67961 * 265.64373 * 3 2 1 5 5 C 1.35448 * 108.87524 * 180.26427 * 4 3 2 6 6 C 1.39840 * 107.86318 * 359.76870 * 5 4 3 7 7 C 1.37653 * 125.67824 * 85.51620 * 3 2 1 8 8 C 1.46679 * 126.23525 * 359.97438 * 7 3 2 9 9 O 1.21695 * 119.99451 * 5.55253 * 8 7 3 10 10 N 1.34770 * 120.00049 * 185.54885 * 8 7 3 11 11 C 1.47023 * 125.65279 * 354.98996 * 10 8 7 12 12 C 1.54322 * 107.27279 * 178.97497 * 11 10 8 13 13 H 1.09002 * 110.72025 * 96.34906 * 12 11 10 14 14 N 1.46496 * 110.71928 * 219.44232 * 12 11 10 15 15 C 1.36943 * 120.00268 * 271.15968 * 14 12 11 16 16 H 1.08000 * 119.99430 * 0.02562 * 15 14 12 17 17 C 1.38810 * 120.00108 * 179.72788 * 15 14 12 18 18 N 1.31625 * 119.99835 * 0.27212 * 17 15 14 19 19 Si 1.86798 * 120.00018 * 180.27551 * 17 15 14 20 20 H 1.48505 * 109.47170 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47233 * 119.99633 * 19 17 15 22 22 H 1.48498 * 109.47058 * 239.99733 * 19 17 15 23 23 C 1.55156 * 103.10319 * 337.89720 * 12 11 10 24 24 C 1.47422 * 125.64690 * 175.03158 * 10 8 7 25 25 H 1.09003 * 110.36933 * 85.14488 * 24 10 8 26 26 C 1.52997 * 110.36840 * 322.93182 * 24 10 8 27 27 H 1.09005 * 109.46539 * 175.01935 * 1 2 3 28 28 H 1.08993 * 109.47460 * 295.01620 * 1 2 3 29 29 H 1.08994 * 109.46925 * 55.02144 * 1 2 3 30 30 H 1.08998 * 109.47910 * 240.00231 * 2 1 3 31 31 H 1.08999 * 109.47718 * 119.99389 * 2 1 3 32 32 H 1.08005 * 125.56328 * 0.06752 * 4 3 2 33 33 H 1.08001 * 126.07332 * 179.74765 * 5 4 3 34 34 H 1.08003 * 126.45331 * 180.02562 * 6 5 4 35 35 H 1.09006 * 109.88081 * 59.55454 * 11 10 8 36 36 H 1.09005 * 110.01040 * 298.46780 * 11 10 8 37 37 H 0.96996 * 120.00332 * 91.15919 * 14 12 11 38 38 H 0.97002 * 119.99558 * 180.02562 * 18 17 15 39 39 H 1.08999 * 111.00333 * 153.49111 * 23 12 11 40 40 H 1.08997 * 111.00238 * 277.34129 * 23 12 11 41 41 H 1.09001 * 109.47242 * 61.45280 * 26 24 10 42 42 H 1.09004 * 109.47555 * 181.45245 * 26 24 10 43 43 H 1.09001 * 109.47016 * 301.45531 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3605 2.0987 -1.0978 5 6 2.7702 3.3291 -0.7069 6 6 2.6772 3.3894 0.6871 7 6 2.2034 2.1673 1.1147 8 6 1.9483 1.7745 2.5047 9 8 1.6298 0.6291 2.7646 10 7 2.0668 2.6820 3.4940 11 6 2.5421 4.0643 3.3365 12 6 2.4833 4.7304 4.7273 13 1 3.4563 4.6880 5.2167 14 7 2.0196 6.1159 4.6193 15 6 2.9219 7.1261 4.4175 16 1 3.9752 6.9014 4.3376 17 6 2.4820 8.4383 4.3095 18 7 1.1982 8.7120 4.4063 19 14 3.7119 9.8154 4.0265 20 1 5.0825 9.2482 3.9555 21 1 3.3955 10.5074 2.7514 22 1 3.6356 10.7854 5.1483 23 6 1.4472 3.8626 5.4894 24 6 1.7422 2.4527 4.9137 25 1 2.5911 2.0037 5.4293 26 6 0.5090 1.5560 5.0398 27 1 -0.3632 -1.0239 -0.0892 28 1 -0.3634 0.4345 0.9312 29 1 -0.3633 0.5891 -0.8420 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 2.3170 1.7457 -2.1176 33 1 3.1088 4.1228 -1.3564 34 1 2.9289 4.2343 1.3111 35 1 1.8970 4.6011 2.6408 36 1 3.5678 4.0664 2.9675 37 1 1.0736 6.3177 4.6906 38 1 0.8908 9.6289 4.3305 39 1 1.6261 3.8943 6.5641 40 1 0.4292 4.1738 5.2551 41 1 0.7157 0.5877 4.5839 42 1 0.2668 1.4172 6.0935 43 1 -0.3342 2.0242 4.5318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989802158.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:40 Heat of formation + Delta-G solvation = 19.820232 kcal Electronic energy + Delta-G solvation = -23975.473331 eV Core-core repulsion = 20635.469591 eV Total energy + Delta-G solvation = -3340.003740 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.43740 -40.75982 -38.56762 -35.98878 -35.12523 -33.29098 -33.08834 -30.27810 -30.13323 -29.77570 -26.86685 -25.89117 -24.49802 -24.04981 -22.14790 -21.76618 -21.06824 -19.86294 -19.18780 -17.97098 -17.63530 -17.10642 -16.50100 -16.22308 -15.78482 -15.53234 -15.32671 -15.10291 -14.91149 -14.61788 -14.28694 -14.24037 -13.68413 -13.50093 -13.26817 -13.12574 -13.08213 -13.05062 -12.87819 -12.85554 -12.78488 -12.20612 -12.15367 -12.08687 -11.97434 -11.71260 -11.52330 -10.99938 -10.69444 -9.75430 -9.62683 -9.13892 -9.04405 -7.92513 -5.22559 0.48911 1.51566 1.52619 1.59114 1.62108 1.83869 2.28217 2.36299 2.59368 3.38793 3.42001 3.81063 3.82355 3.89601 3.91320 4.11043 4.16358 4.19235 4.29995 4.38684 4.42700 4.45815 4.50903 4.55024 4.73413 4.74376 4.79495 4.85651 4.87577 5.09682 5.13607 5.15230 5.16708 5.24533 5.31311 5.32710 5.52281 5.57294 5.86109 6.02539 6.28204 6.37660 6.49775 7.12657 7.36097 8.06921 8.31164 9.30719 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.004658 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.310701 B = 6010.261013 C = 7216.161707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.093 3.907 3 N -0.413 5.413 4 C 0.030 3.970 5 C -0.229 4.229 6 C -0.161 4.161 7 C -0.081 4.081 8 C 0.596 3.404 9 O -0.573 6.573 10 N -0.600 5.600 11 C 0.086 3.914 12 C 0.164 3.836 13 H 0.073 0.927 14 N -0.723 5.723 15 C -0.241 4.241 16 H 0.082 0.918 17 C -0.069 4.069 18 N -0.968 5.968 19 Si 0.968 3.032 20 H -0.264 1.264 21 H -0.296 1.296 22 H -0.296 1.296 23 C -0.124 4.124 24 C 0.140 3.860 25 H 0.088 0.912 26 C -0.153 4.153 27 H 0.096 0.904 28 H 0.032 0.968 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.209 0.791 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.375 0.625 38 H 0.250 0.750 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.260 -17.762 -8.145 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.027 4.027 3 N -0.087 5.087 4 C -0.106 4.106 5 C -0.252 4.252 6 C -0.188 4.188 7 C -0.193 4.193 8 C 0.388 3.612 9 O -0.457 6.457 10 N -0.332 5.332 11 C -0.040 4.040 12 C 0.053 3.947 13 H 0.091 0.909 14 N -0.362 5.362 15 C -0.373 4.373 16 H 0.099 0.901 17 C -0.261 4.261 18 N -0.618 5.618 19 Si 0.798 3.202 20 H -0.188 1.188 21 H -0.224 1.224 22 H -0.223 1.223 23 C -0.163 4.163 24 C 0.037 3.963 25 H 0.106 0.894 26 C -0.211 4.211 27 H 0.115 0.885 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.141 0.859 31 H 0.105 0.895 32 H 0.225 0.775 33 H 0.174 0.826 34 H 0.164 0.836 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.208 0.792 38 H 0.059 0.941 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.127 -18.690 -8.023 20.370 hybrid contribution 0.052 1.439 -0.120 1.445 sum 1.179 -17.251 -8.143 19.112 Atomic orbital electron populations 1.22018 0.93924 1.03926 1.01470 1.22187 0.96072 0.78775 1.05629 1.44279 1.47365 1.12258 1.04793 1.22628 1.03004 0.92270 0.92654 1.21176 1.10562 0.98913 0.94574 1.22245 1.03148 0.96329 0.97078 1.19981 1.17242 0.94081 0.88041 1.16808 0.76993 0.83874 0.83493 1.90650 1.51605 1.19085 1.84312 1.48224 1.64172 1.12610 1.08180 1.23263 0.98622 0.80611 1.01471 1.21410 0.97440 0.83766 0.92036 0.90868 1.42512 1.06671 1.00945 1.86092 1.19686 0.90558 0.87161 1.39860 0.90052 1.25499 0.97451 0.99719 1.03467 1.69823 1.14351 1.18826 1.58808 0.85151 0.79017 0.79513 0.76546 1.18797 1.22354 1.22327 1.23108 0.99429 0.92637 1.01113 1.22020 0.98467 0.96077 0.79715 0.89374 1.22044 0.95789 1.00289 1.02969 0.88549 0.94881 0.91743 0.85871 0.89466 0.77465 0.82623 0.83615 0.92226 0.91416 0.79220 0.94073 0.88050 0.91564 0.91145 0.89613 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 10.24 71.98 0.74 -2.25 16 2 C 0.09 1.87 6.21 86.38 0.54 2.40 16 3 N -0.41 -10.60 2.76 -511.02 -1.41 -12.01 16 4 C 0.03 0.65 11.37 83.48 0.95 1.60 16 5 C -0.23 -5.95 10.81 22.01 0.24 -5.72 16 6 C -0.16 -5.17 9.32 22.57 0.21 -4.96 16 7 C -0.08 -2.61 6.86 40.35 0.28 -2.33 16 8 C 0.60 20.58 7.53 86.45 0.65 21.23 16 9 O -0.57 -20.45 12.53 -4.33 -0.05 -20.50 16 10 N -0.60 -19.88 3.24 -792.40 -2.57 -22.45 16 11 C 0.09 3.04 4.75 86.73 0.41 3.45 16 12 C 0.16 6.05 3.59 46.18 0.17 6.21 16 13 H 0.07 2.63 8.11 -2.39 -0.02 2.61 16 14 N -0.72 -34.32 5.16 -317.33 -1.64 -35.95 16 15 C -0.24 -12.62 9.97 84.03 0.84 -11.79 16 16 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 17 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 18 N -0.97 -57.56 13.06 21.65 0.28 -57.28 16 19 Si 0.97 44.67 29.55 68.60 2.03 46.69 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 23 C -0.12 -3.81 6.15 32.06 0.20 -3.62 16 24 C 0.14 4.05 3.74 45.54 0.17 4.22 16 25 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 26 C -0.15 -4.18 8.77 71.98 0.63 -3.55 16 27 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.03 0.85 8.12 -2.39 -0.02 0.83 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.12 1.50 8.13 -2.39 -0.02 1.48 16 31 H 0.09 2.12 6.47 -2.39 -0.02 2.10 16 32 H 0.21 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 34 H 0.15 4.98 4.43 -2.91 -0.01 4.96 16 35 H 0.06 2.38 6.61 -2.38 -0.02 2.37 16 36 H 0.07 2.33 7.11 -2.38 -0.02 2.31 16 37 H 0.38 19.42 7.73 -92.71 -0.72 18.71 16 38 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 39 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.07 2.20 7.92 -2.39 -0.02 2.18 16 41 H 0.07 2.13 5.93 -2.39 -0.01 2.11 16 42 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -66.35 344.09 3.41 -62.94 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: 0.29 Total: 36.97 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 6.48 Total: 1.59 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -5.34 Total: -127.69 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.05 Total: -20.50 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.35 3.41 -62.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989802158.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.759 kcal (2) G-P(sol) polarization free energy of solvation -66.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds