Wall clock time and date at job start Tue Mar 31 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47499 * 2 1 4 4 C 1.35529 * 125.68087 * 265.24407 * 3 2 1 5 5 C 1.35454 * 108.87657 * 180.26068 * 4 3 2 6 6 C 1.39837 * 107.86183 * 359.76946 * 5 4 3 7 7 C 1.37654 * 125.67779 * 85.10462 * 3 2 1 8 8 C 1.46676 * 126.23205 * 0.02562 * 7 3 2 9 9 O 1.21693 * 120.00280 * 8.01693 * 8 7 3 10 10 N 1.34782 * 120.00002 * 188.02057 * 8 7 3 11 11 C 1.47425 * 125.64784 * 358.92066 * 10 8 7 12 12 C 1.54910 * 104.92792 * 155.83697 * 11 10 8 13 13 H 1.08998 * 111.00140 * 155.13779 * 12 11 10 14 14 N 1.46497 * 111.00673 * 278.99531 * 12 11 10 15 15 C 1.36940 * 119.99734 * 273.54736 * 14 12 11 16 16 H 1.08003 * 119.99833 * 359.97438 * 15 14 12 17 17 C 1.38815 * 120.00176 * 180.02562 * 15 14 12 18 18 N 1.31614 * 119.99654 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99970 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47215 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46882 * 119.99755 * 19 17 15 22 22 H 1.48496 * 109.47112 * 239.99636 * 19 17 15 23 23 C 1.55443 * 101.44803 * 37.00886 * 12 11 10 24 24 C 1.47024 * 125.64852 * 178.94845 * 10 8 7 25 25 H 1.09001 * 109.87890 * 300.45498 * 24 10 8 26 26 C 1.52996 * 109.88036 * 61.46533 * 24 10 8 27 27 H 1.08994 * 109.47443 * 175.01640 * 1 2 3 28 28 H 1.09000 * 109.46722 * 295.01919 * 1 2 3 29 29 H 1.09005 * 109.46533 * 55.01902 * 1 2 3 30 30 H 1.08998 * 109.46942 * 240.00099 * 2 1 3 31 31 H 1.09003 * 109.46999 * 120.00057 * 2 1 3 32 32 H 1.08005 * 125.56549 * 0.06593 * 4 3 2 33 33 H 1.08001 * 126.07204 * 179.74042 * 5 4 3 34 34 H 1.08004 * 126.45781 * 180.02562 * 6 5 4 35 35 H 1.08996 * 110.36533 * 274.73447 * 11 10 8 36 36 H 1.08998 * 110.36483 * 36.94871 * 11 10 8 37 37 H 0.96993 * 120.00338 * 93.53927 * 14 12 11 38 38 H 0.97001 * 119.99643 * 180.02562 * 18 17 15 39 39 H 1.09005 * 110.70832 * 206.14761 * 23 12 11 40 40 H 1.08997 * 110.86476 * 82.95563 * 23 12 11 41 41 H 1.09001 * 109.47313 * 58.54571 * 26 24 10 42 42 H 1.09003 * 109.47006 * 178.54788 * 26 24 10 43 43 H 1.09000 * 109.47181 * 298.54172 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3680 2.0960 -1.0971 5 6 2.7752 3.3274 -0.7064 6 6 2.6731 3.3909 0.6868 7 6 2.1961 2.1698 1.1141 8 6 1.9326 1.7800 2.5033 9 8 1.6570 0.6249 2.7693 10 7 1.9957 2.7010 3.4853 11 6 2.3386 4.1238 3.3080 12 6 1.6901 4.8441 4.5165 13 1 2.2100 5.7755 4.7411 14 7 0.2643 5.0846 4.2812 15 6 -0.1395 6.2130 3.6186 16 1 0.5931 6.9258 3.2699 17 6 -1.4906 6.4412 3.3961 18 7 -2.3834 5.5727 3.8214 19 14 -2.0414 7.9807 2.4929 20 1 -0.8523 8.7895 2.1225 21 1 -2.7812 7.5958 1.2642 22 1 -2.9287 8.7810 3.3746 23 6 1.8998 3.7988 5.6476 24 6 1.7344 2.4530 4.9107 25 1 0.7183 2.0809 5.0420 26 6 2.7365 1.4322 5.4535 27 1 -0.3634 -1.0237 -0.0893 28 1 -0.3633 0.4346 0.9313 29 1 -0.3632 0.5892 -0.8421 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.3313 1.7407 -2.1164 33 1 3.1183 4.1194 -1.3555 34 1 2.9206 4.2371 1.3106 35 1 3.4202 4.2579 3.3222 36 1 1.9225 4.5007 2.3738 37 1 -0.3937 4.4446 4.5945 38 1 -3.3275 5.7320 3.6656 39 1 1.1403 3.9106 6.4214 40 1 2.8990 3.8843 6.0748 41 1 3.7501 1.8073 5.3118 42 1 2.5532 1.2728 6.5161 43 1 2.6200 0.4893 4.9193 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989802160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:47 Heat of formation + Delta-G solvation = 19.589984 kcal Electronic energy + Delta-G solvation = -24375.050195 eV Core-core repulsion = 21035.036471 eV Total energy + Delta-G solvation = -3340.013724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.40465 -40.71447 -38.57037 -35.82917 -35.13742 -33.20921 -33.00396 -30.30790 -30.10870 -29.79775 -26.93423 -25.75115 -24.62711 -24.21317 -21.97331 -21.83690 -20.83768 -19.91451 -19.22523 -17.99295 -17.67510 -16.86274 -16.49574 -16.16825 -15.86647 -15.51839 -15.23141 -15.11029 -14.90207 -14.77056 -14.19481 -14.15291 -13.62405 -13.46556 -13.31318 -13.19091 -13.07749 -13.01568 -12.88122 -12.87653 -12.71043 -12.22005 -12.19004 -12.10171 -11.77413 -11.63820 -11.48195 -11.03163 -10.82998 -9.73528 -9.60797 -9.12368 -8.93149 -7.92067 -5.20371 0.54407 1.48535 1.49237 1.58826 1.63173 1.88789 2.34413 2.43732 2.57812 3.39284 3.50900 3.79387 3.87197 3.91413 3.96288 4.07024 4.12632 4.17227 4.33500 4.37532 4.41535 4.46020 4.55088 4.69252 4.71375 4.77049 4.77605 4.83455 4.95524 5.09542 5.10434 5.14586 5.21262 5.24563 5.30742 5.35843 5.52507 5.57689 5.90798 6.05265 6.28978 6.40126 6.58485 7.17706 7.35601 8.10571 8.32534 9.31789 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.006119 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.615710 B = 4574.706366 C = 5688.372165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.096 3.904 3 N -0.417 5.417 4 C 0.023 3.977 5 C -0.225 4.225 6 C -0.156 4.156 7 C -0.082 4.082 8 C 0.590 3.410 9 O -0.590 6.590 10 N -0.589 5.589 11 C 0.065 3.935 12 C 0.156 3.844 13 H 0.090 0.910 14 N -0.725 5.725 15 C -0.230 4.230 16 H 0.087 0.913 17 C -0.078 4.078 18 N -0.973 5.973 19 Si 0.967 3.033 20 H -0.258 1.258 21 H -0.303 1.303 22 H -0.297 1.297 23 C -0.121 4.121 24 C 0.137 3.863 25 H 0.039 0.961 26 C -0.146 4.146 27 H 0.097 0.903 28 H 0.022 0.978 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.206 0.794 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.369 0.631 38 H 0.247 0.753 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.104 -7.820 -6.157 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.024 4.024 3 N -0.091 5.091 4 C -0.112 4.112 5 C -0.249 4.249 6 C -0.182 4.182 7 C -0.194 4.194 8 C 0.382 3.618 9 O -0.474 6.474 10 N -0.319 5.319 11 C -0.060 4.060 12 C 0.046 3.954 13 H 0.107 0.893 14 N -0.363 5.363 15 C -0.361 4.361 16 H 0.104 0.896 17 C -0.270 4.270 18 N -0.624 5.624 19 Si 0.797 3.203 20 H -0.182 1.182 21 H -0.231 1.231 22 H -0.224 1.224 23 C -0.160 4.160 24 C 0.034 3.966 25 H 0.057 0.943 26 C -0.204 4.204 27 H 0.116 0.884 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.145 0.855 31 H 0.103 0.897 32 H 0.223 0.777 33 H 0.181 0.819 34 H 0.178 0.822 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.200 0.800 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.845 -8.660 -6.096 17.431 hybrid contribution -1.371 0.458 -0.263 1.469 sum 12.475 -8.202 -6.358 16.227 Atomic orbital electron populations 1.22025 0.94624 1.03824 1.01012 1.22128 0.95479 0.79222 1.05616 1.44263 1.47466 1.12211 1.05139 1.22658 1.03323 0.92744 0.92513 1.21206 1.10393 0.98605 0.94652 1.22292 1.03053 0.95880 0.97001 1.20003 1.17112 0.94518 0.87799 1.16939 0.76862 0.84092 0.83899 1.90668 1.52879 1.19490 1.84387 1.48082 1.66865 1.09997 1.06980 1.23766 1.00005 0.79763 1.02448 1.21744 0.84951 0.96611 0.92113 0.89264 1.42530 1.01947 1.24223 1.67634 1.19708 0.91302 0.98435 1.26696 0.89555 1.25530 0.96434 1.01537 1.03487 1.69846 1.00397 1.38346 1.53781 0.85150 0.78271 0.79601 0.77262 1.18198 1.23053 1.22408 1.23027 1.04234 0.91499 0.97202 1.21559 0.98084 0.97301 0.79667 0.94263 1.22021 0.98719 0.98093 1.01581 0.88422 0.95917 0.91816 0.85466 0.89658 0.77702 0.81921 0.82238 0.88926 0.90462 0.80008 0.94454 0.90365 0.86681 0.91253 0.89729 0.93835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.24 71.98 0.74 -3.36 16 2 C 0.10 2.37 6.23 86.38 0.54 2.91 16 3 N -0.42 -12.26 2.76 -511.02 -1.41 -13.67 16 4 C 0.02 0.54 11.37 83.48 0.95 1.49 16 5 C -0.23 -5.90 10.81 22.01 0.24 -5.67 16 6 C -0.16 -4.98 9.16 22.57 0.21 -4.78 16 7 C -0.08 -2.90 6.84 40.35 0.28 -2.63 16 8 C 0.59 23.27 7.61 86.45 0.66 23.92 16 9 O -0.59 -25.15 13.75 -4.33 -0.06 -25.21 16 10 N -0.59 -21.33 3.07 -792.72 -2.43 -23.76 16 11 C 0.07 2.15 4.93 86.86 0.43 2.58 16 12 C 0.16 5.51 3.71 46.49 0.17 5.68 16 13 H 0.09 2.88 8.13 -2.39 -0.02 2.86 16 14 N -0.73 -34.88 5.27 -315.90 -1.66 -36.55 16 15 C -0.23 -12.15 9.98 84.03 0.84 -11.32 16 16 H 0.09 4.26 7.83 -2.91 -0.02 4.24 16 17 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 18 N -0.97 -60.20 13.06 21.65 0.28 -59.91 16 19 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 23 C -0.12 -3.53 6.06 31.88 0.19 -3.34 16 24 C 0.14 4.56 3.45 45.34 0.16 4.71 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 C -0.15 -4.01 9.11 71.98 0.66 -3.35 16 27 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.13 2.01 8.12 -2.39 -0.02 1.99 16 31 H 0.09 2.49 6.45 -2.39 -0.02 2.48 16 32 H 0.21 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 34 H 0.16 4.84 4.71 -2.91 -0.01 4.83 16 35 H 0.09 2.43 8.01 -2.39 -0.02 2.41 16 36 H 0.08 2.92 5.30 -2.39 -0.01 2.90 16 37 H 0.37 20.00 7.82 -92.71 -0.72 19.28 16 38 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.11 2.48 7.85 -2.39 -0.02 2.46 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.04 1.40 6.83 -2.39 -0.02 1.38 16 Total: -1.00 -72.85 346.26 3.54 -69.30 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: 0.29 Total: 39.02 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 6.52 Total: 2.91 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -5.22 Total: -133.89 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.06 Total: -25.21 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.85 3.54 -69.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989802160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.892 kcal (2) G-P(sol) polarization free energy of solvation -72.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds