Wall clock time and date at job start Tue Mar 31 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.47201 * 2 1 4 4 C 1.35528 * 125.67912 * 263.93271 * 3 2 1 5 5 C 1.35459 * 108.86828 * 180.30197 * 4 3 2 6 6 C 1.39830 * 107.86688 * 359.73254 * 5 4 3 7 7 C 1.37653 * 125.67385 * 83.77951 * 3 2 1 8 8 C 1.46677 * 126.23631 * 359.95916 * 7 3 2 9 9 O 1.21696 * 119.99859 * 7.70837 * 8 7 3 10 10 N 1.34779 * 120.00315 * 187.70807 * 8 7 3 11 11 C 1.46498 * 119.99510 * 6.74859 * 10 8 7 12 12 C 1.46491 * 120.00023 * 186.74726 * 10 8 7 13 13 C 1.53788 * 113.69001 * 196.96682 * 12 10 8 14 14 C 1.53782 * 87.08161 * 89.12566 * 13 12 10 15 15 N 1.46495 * 113.61454 * 270.88410 * 14 13 12 16 16 C 1.36936 * 119.99876 * 257.81587 * 15 14 13 17 17 H 1.07993 * 120.00157 * 7.17682 * 16 15 14 18 18 C 1.38816 * 119.99868 * 187.17963 * 16 15 14 19 19 N 1.31614 * 119.99865 * 176.33431 * 18 16 15 20 20 Si 1.86807 * 119.99911 * 356.33210 * 18 16 15 21 21 H 1.48493 * 109.47080 * 94.69423 * 20 18 16 22 22 H 1.48505 * 109.46754 * 214.69188 * 20 18 16 23 23 H 1.48500 * 109.46796 * 334.68949 * 20 18 16 24 24 C 1.53783 * 113.61483 * 294.49974 * 12 10 8 25 25 H 1.09005 * 109.46973 * 304.98188 * 1 2 3 26 26 H 1.08992 * 109.47503 * 64.98297 * 1 2 3 27 27 H 1.09001 * 109.47267 * 184.99005 * 1 2 3 28 28 H 1.09007 * 109.47124 * 240.00528 * 2 1 3 29 29 H 1.09003 * 109.47850 * 120.00348 * 2 1 3 30 30 H 1.08000 * 125.56831 * 0.07380 * 4 3 2 31 31 H 1.08007 * 126.06119 * 179.69792 * 5 4 3 32 32 H 1.08002 * 126.45983 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47172 * 275.53141 * 11 10 8 34 34 H 1.09001 * 109.47710 * 35.53241 * 11 10 8 35 35 H 1.09001 * 109.46870 * 155.53872 * 11 10 8 36 36 H 1.09000 * 112.85527 * 65.69722 * 12 10 8 37 37 H 1.09000 * 113.61236 * 203.67985 * 13 12 10 38 38 H 1.08995 * 113.61076 * 334.57240 * 13 12 10 39 39 H 1.09002 * 113.68948 * 139.99080 * 14 13 12 40 40 H 0.97003 * 119.99894 * 77.81059 * 15 14 13 41 41 H 0.97005 * 119.99623 * 179.97438 * 19 18 16 42 42 H 1.08996 * 113.61243 * 25.35015 * 24 12 10 43 43 H 1.08995 * 113.61438 * 156.25435 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3915 2.0877 -1.0947 5 6 2.7910 3.3218 -0.7044 6 6 2.6586 3.3960 0.6856 7 6 2.1717 2.1785 1.1116 8 6 1.8766 1.7997 2.4976 9 8 1.5885 0.6481 2.7655 10 7 1.9246 2.7271 3.4745 11 6 2.1251 4.1381 3.1356 12 6 1.7763 2.3239 4.8750 13 6 1.4411 3.4890 5.8212 14 6 -0.0401 3.1996 5.5256 15 7 -0.5597 3.9262 4.3646 16 6 -1.3362 5.0396 4.5450 17 1 -1.4703 5.4497 5.5350 18 6 -1.9509 5.6411 3.4554 19 7 -2.7548 6.6673 3.6371 20 14 -1.6371 4.9941 1.7313 21 1 -2.7060 4.0320 1.3615 22 1 -1.6361 6.1263 0.7703 23 1 -0.3197 4.3100 1.6916 24 6 0.3865 1.7564 5.2088 25 1 -0.3633 0.5892 0.8420 26 1 -0.3634 0.4345 -0.9312 27 1 -0.3634 -1.0238 0.0894 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.3766 1.7247 -2.1118 31 1 3.1489 4.1086 -1.3521 32 1 2.8932 4.2468 1.3082 33 1 3.1912 4.3376 3.0261 34 1 1.6154 4.3629 2.1987 35 1 1.7182 4.7639 3.9299 36 1 2.5984 1.6997 5.2253 37 1 1.7237 3.3049 6.8577 38 1 1.7779 4.4590 5.4556 39 1 -0.6854 3.2821 6.4002 40 1 -0.3536 3.6187 3.4679 41 1 -3.1841 7.0878 2.8756 42 1 -0.1281 1.3278 4.3489 43 1 0.3807 1.0987 6.0779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999840319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:13 Heat of formation + Delta-G solvation = 85.468723 kcal Electronic energy + Delta-G solvation = -24995.664780 eV Core-core repulsion = 21658.507773 eV Total energy + Delta-G solvation = -3337.157008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44905 -39.88296 -37.55276 -34.91903 -33.74289 -33.14211 -30.61676 -29.33484 -29.08663 -27.17026 -25.09331 -24.52652 -23.46654 -22.97127 -21.24481 -20.59571 -19.12326 -18.38514 -17.63467 -16.93940 -16.20533 -15.68138 -15.45828 -14.90749 -14.77087 -14.34890 -14.13283 -13.84950 -13.66438 -13.40948 -12.87227 -12.84612 -12.51668 -12.40379 -12.20512 -12.07370 -11.94184 -11.87981 -11.55484 -11.23857 -10.99355 -10.82791 -10.78028 -10.23278 -10.05147 -9.86549 -9.62912 -9.42757 -8.90637 -8.65143 -8.31516 -8.04454 -7.27971 -5.81977 -3.17708 1.63667 2.67193 2.85496 3.34006 3.38767 3.41486 3.44871 3.59768 4.55002 4.64839 4.67033 4.97289 5.02064 5.06548 5.12052 5.23556 5.27011 5.39326 5.41842 5.46553 5.57012 5.64361 5.67254 5.75326 5.78540 5.80827 6.08881 6.10020 6.14651 6.15775 6.21660 6.27706 6.46208 6.53371 6.65751 6.77987 6.82906 7.04650 7.09691 7.30768 7.65017 7.99738 8.38691 8.41921 9.18187 9.90504 10.11803 11.35712 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.007440 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.076537 B = 3762.352226 C = 4622.962529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 N -0.409 5.409 4 C 0.009 3.991 5 C -0.212 4.212 6 C -0.156 4.156 7 C -0.045 4.045 8 C 0.586 3.414 9 O -0.552 6.552 10 N -0.575 5.575 11 C 0.048 3.952 12 C 0.129 3.871 13 C -0.182 4.182 14 C 0.170 3.830 15 N -0.729 5.729 16 C -0.247 4.247 17 H 0.092 0.908 18 C 0.010 3.990 19 N -0.929 5.929 20 Si 0.874 3.126 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.269 1.269 24 C -0.161 4.161 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.165 0.835 31 H 0.140 0.860 32 H 0.162 0.838 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.365 0.635 41 H 0.260 0.740 42 H 0.073 0.927 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.735 -10.393 -6.054 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.024 4.024 3 N -0.083 5.083 4 C -0.126 4.126 5 C -0.236 4.236 6 C -0.182 4.182 7 C -0.158 4.158 8 C 0.376 3.624 9 O -0.433 6.433 10 N -0.306 5.306 11 C -0.094 4.094 12 C 0.026 3.974 13 C -0.223 4.223 14 C 0.058 3.942 15 N -0.371 5.371 16 C -0.376 4.376 17 H 0.110 0.890 18 C -0.186 4.186 19 N -0.576 5.576 20 Si 0.705 3.295 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.195 1.195 24 C -0.201 4.201 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.124 0.876 30 H 0.182 0.818 31 H 0.158 0.842 32 H 0.179 0.821 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.199 0.801 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.260 -11.160 -5.785 17.559 hybrid contribution 0.165 -0.244 -1.510 1.538 sum 12.425 -11.404 -7.294 18.375 Atomic orbital electron populations 1.22081 0.94126 1.03108 1.02909 1.22018 0.95950 0.79769 1.04646 1.44036 1.47247 1.11584 1.05431 1.21957 1.05725 0.93419 0.91530 1.20869 1.09950 0.97346 0.95433 1.22244 1.03486 0.96685 0.95775 1.20064 1.14518 0.93108 0.88097 1.16952 0.77298 0.84830 0.83314 1.90730 1.49775 1.19169 1.83606 1.47072 1.70636 1.07512 1.05390 1.22794 1.00222 0.81710 1.04627 1.21825 0.97580 0.97883 0.80106 1.24240 1.02140 0.98012 0.97925 1.21110 0.91756 0.89777 0.91561 1.42656 1.60637 1.31269 1.02524 1.19086 1.20779 1.01760 0.96013 0.89046 1.24664 0.98479 0.98163 0.97328 1.69705 1.33190 1.24822 1.29915 0.86727 0.78379 0.78147 0.86245 1.21525 1.21568 1.19477 1.23717 0.96064 0.98441 1.01863 0.91468 0.92429 0.90723 0.89623 0.87561 0.81818 0.84199 0.82131 0.92874 0.89458 0.87898 0.90817 0.89583 0.89931 0.91226 0.80056 0.93033 0.90841 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 10.24 37.15 0.38 -1.73 16 2 C 0.10 1.20 6.19 -4.04 -0.03 1.18 16 3 N -0.41 -5.99 2.76 -112.87 -0.31 -6.30 16 4 C 0.01 0.11 11.37 -16.91 -0.19 -0.08 16 5 C -0.21 -2.85 10.81 -39.98 -0.43 -3.28 16 6 C -0.16 -2.40 8.73 -39.12 -0.34 -2.75 16 7 C -0.04 -0.75 6.71 -81.98 -0.55 -1.30 16 8 C 0.59 10.70 7.41 -12.85 -0.10 10.61 16 9 O -0.55 -10.75 13.65 5.19 0.07 -10.68 16 10 N -0.57 -9.89 2.16 -174.54 -0.38 -10.27 16 11 C 0.05 0.78 6.93 59.85 0.41 1.20 16 12 C 0.13 2.09 4.15 -67.12 -0.28 1.81 16 13 C -0.18 -2.87 7.16 -25.91 -0.19 -3.05 16 14 C 0.17 3.24 4.55 -67.12 -0.31 2.94 16 15 N -0.73 -16.92 3.75 -52.64 -0.20 -17.11 16 16 C -0.25 -6.75 10.46 -15.06 -0.16 -6.91 16 17 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 18 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 19 N -0.93 -28.74 13.97 55.49 0.78 -27.97 16 20 Si 0.87 22.17 27.86 -169.99 -4.74 17.43 16 21 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.27 -6.36 4.86 56.52 0.27 -6.09 16 24 C -0.16 -2.78 7.11 -25.92 -0.18 -2.96 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 29 H 0.11 1.46 6.54 -51.93 -0.34 1.12 16 30 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.14 1.54 8.06 -52.48 -0.42 1.11 16 32 H 0.16 2.26 4.44 -52.49 -0.23 2.03 16 33 H 0.05 0.70 7.27 -51.93 -0.38 0.32 16 34 H 0.09 1.54 3.93 -51.93 -0.20 1.34 16 35 H 0.10 1.80 4.55 -51.93 -0.24 1.56 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.36 5.59 -51.93 -0.29 1.07 16 39 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 40 H 0.36 8.58 3.93 -40.82 -0.16 8.42 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.07 1.47 7.16 -51.93 -0.37 1.09 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 331.53 15.07 5.00 5.00 Total: -1.00 -32.79 331.53 -7.95 -40.74 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -6.12 Total: 13.31 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.05 Total: -4.15 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.11 Total: -61.65 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.74 Total: 17.43 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.79 -7.95 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999840319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.209 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds