Wall clock time and date at job start Tue Mar 31 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.47201 * 2 1 4 4 C 1.35528 * 125.67912 * 263.93271 * 3 2 1 5 5 C 1.35459 * 108.86828 * 180.30197 * 4 3 2 6 6 C 1.39830 * 107.86688 * 359.73254 * 5 4 3 7 7 C 1.37653 * 125.67385 * 83.77951 * 3 2 1 8 8 C 1.46677 * 126.23631 * 359.95916 * 7 3 2 9 9 O 1.21696 * 119.99859 * 7.70837 * 8 7 3 10 10 N 1.34779 * 120.00315 * 187.70807 * 8 7 3 11 11 C 1.46498 * 119.99510 * 6.74859 * 10 8 7 12 12 C 1.46491 * 120.00023 * 186.74726 * 10 8 7 13 13 C 1.53788 * 113.69001 * 196.96682 * 12 10 8 14 14 C 1.53782 * 87.08161 * 89.12566 * 13 12 10 15 15 N 1.46495 * 113.61454 * 270.88410 * 14 13 12 16 16 C 1.36936 * 119.99876 * 257.81587 * 15 14 13 17 17 H 1.07993 * 120.00157 * 7.17682 * 16 15 14 18 18 C 1.38816 * 119.99868 * 187.17963 * 16 15 14 19 19 N 1.31614 * 119.99865 * 176.33431 * 18 16 15 20 20 Si 1.86807 * 119.99911 * 356.33210 * 18 16 15 21 21 H 1.48493 * 109.47080 * 94.69423 * 20 18 16 22 22 H 1.48505 * 109.46754 * 214.69188 * 20 18 16 23 23 H 1.48500 * 109.46796 * 334.68949 * 20 18 16 24 24 C 1.53783 * 113.61483 * 294.49974 * 12 10 8 25 25 H 1.09005 * 109.46973 * 304.98188 * 1 2 3 26 26 H 1.08992 * 109.47503 * 64.98297 * 1 2 3 27 27 H 1.09001 * 109.47267 * 184.99005 * 1 2 3 28 28 H 1.09007 * 109.47124 * 240.00528 * 2 1 3 29 29 H 1.09003 * 109.47850 * 120.00348 * 2 1 3 30 30 H 1.08000 * 125.56831 * 0.07380 * 4 3 2 31 31 H 1.08007 * 126.06119 * 179.69792 * 5 4 3 32 32 H 1.08002 * 126.45983 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47172 * 275.53141 * 11 10 8 34 34 H 1.09001 * 109.47710 * 35.53241 * 11 10 8 35 35 H 1.09001 * 109.46870 * 155.53872 * 11 10 8 36 36 H 1.09000 * 112.85527 * 65.69722 * 12 10 8 37 37 H 1.09000 * 113.61236 * 203.67985 * 13 12 10 38 38 H 1.08995 * 113.61076 * 334.57240 * 13 12 10 39 39 H 1.09002 * 113.68948 * 139.99080 * 14 13 12 40 40 H 0.97003 * 119.99894 * 77.81059 * 15 14 13 41 41 H 0.97005 * 119.99623 * 179.97438 * 19 18 16 42 42 H 1.08996 * 113.61243 * 25.35015 * 24 12 10 43 43 H 1.08995 * 113.61438 * 156.25435 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3915 2.0877 -1.0947 5 6 2.7910 3.3218 -0.7044 6 6 2.6586 3.3960 0.6856 7 6 2.1717 2.1785 1.1116 8 6 1.8766 1.7997 2.4976 9 8 1.5885 0.6481 2.7655 10 7 1.9246 2.7271 3.4745 11 6 2.1251 4.1381 3.1356 12 6 1.7763 2.3239 4.8750 13 6 1.4411 3.4890 5.8212 14 6 -0.0401 3.1996 5.5256 15 7 -0.5597 3.9262 4.3646 16 6 -1.3362 5.0396 4.5450 17 1 -1.4703 5.4497 5.5350 18 6 -1.9509 5.6411 3.4554 19 7 -2.7548 6.6673 3.6371 20 14 -1.6371 4.9941 1.7313 21 1 -2.7060 4.0320 1.3615 22 1 -1.6361 6.1263 0.7703 23 1 -0.3197 4.3100 1.6916 24 6 0.3865 1.7564 5.2088 25 1 -0.3633 0.5892 0.8420 26 1 -0.3634 0.4345 -0.9312 27 1 -0.3634 -1.0238 0.0894 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.3766 1.7247 -2.1118 31 1 3.1489 4.1086 -1.3521 32 1 2.8932 4.2468 1.3082 33 1 3.1912 4.3376 3.0261 34 1 1.6154 4.3629 2.1987 35 1 1.7182 4.7639 3.9299 36 1 2.5984 1.6997 5.2253 37 1 1.7237 3.3049 6.8577 38 1 1.7779 4.4590 5.4556 39 1 -0.6854 3.2821 6.4002 40 1 -0.3536 3.6187 3.4679 41 1 -3.1841 7.0878 2.8756 42 1 -0.1281 1.3278 4.3489 43 1 0.3807 1.0987 6.0779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999840319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:13 Heat of formation + Delta-G solvation = 65.803268 kcal Electronic energy + Delta-G solvation = -24996.517538 eV Core-core repulsion = 21658.507773 eV Total energy + Delta-G solvation = -3338.009766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.55758 -41.19248 -38.94505 -36.22031 -35.32871 -34.60981 -32.62391 -30.40843 -30.20160 -28.47214 -26.63851 -25.97678 -24.70321 -24.42714 -22.63202 -21.69599 -20.38438 -19.99690 -19.33069 -18.10831 -17.61891 -16.94873 -16.70872 -16.58173 -16.07707 -15.78685 -15.53164 -15.07893 -14.82338 -14.78455 -14.75907 -14.12998 -13.82897 -13.76258 -13.51694 -13.30886 -13.18534 -13.06699 -12.96502 -12.88969 -12.53418 -12.22191 -12.17801 -11.88653 -11.80765 -11.63631 -11.26059 -10.97562 -10.74948 -9.73949 -9.59369 -9.27425 -9.14249 -8.05757 -5.37114 0.47676 1.28776 1.33263 1.38207 1.58271 1.83176 2.25860 2.35663 2.41667 3.24023 3.41300 3.55266 3.74977 3.77264 3.85022 4.03995 4.13365 4.17493 4.25479 4.29949 4.33415 4.39932 4.45596 4.56011 4.67182 4.79144 4.81957 4.85794 4.87791 5.02229 5.04919 5.07903 5.14087 5.25442 5.31220 5.35815 5.60687 5.80766 5.88171 6.00743 6.21136 6.31722 6.38770 7.06033 7.11615 7.84519 8.03575 9.15400 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.007440 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.076537 B = 3762.352226 C = 4622.962529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.096 3.904 3 N -0.417 5.417 4 C 0.024 3.976 5 C -0.227 4.227 6 C -0.162 4.162 7 C -0.087 4.087 8 C 0.577 3.423 9 O -0.576 6.576 10 N -0.580 5.580 11 C 0.053 3.947 12 C 0.129 3.871 13 C -0.159 4.159 14 C 0.145 3.855 15 N -0.733 5.733 16 C -0.221 4.221 17 H 0.066 0.934 18 C -0.051 4.051 19 N -0.976 5.976 20 Si 0.935 3.065 21 H -0.302 1.302 22 H -0.290 1.290 23 H -0.249 1.249 24 C -0.152 4.152 25 H 0.022 0.978 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.127 0.873 29 H 0.087 0.913 30 H 0.206 0.794 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.042 0.958 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.934 -11.733 -7.411 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.090 5.090 4 C -0.112 4.112 5 C -0.250 4.250 6 C -0.188 4.188 7 C -0.200 4.200 8 C 0.368 3.632 9 O -0.459 6.459 10 N -0.311 5.311 11 C -0.088 4.088 12 C 0.026 3.974 13 C -0.199 4.199 14 C 0.036 3.964 15 N -0.376 5.376 16 C -0.352 4.352 17 H 0.084 0.916 18 C -0.243 4.243 19 N -0.627 5.627 20 Si 0.765 3.235 21 H -0.230 1.230 22 H -0.216 1.216 23 H -0.174 1.174 24 C -0.191 4.191 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.112 0.888 28 H 0.145 0.855 29 H 0.106 0.894 30 H 0.223 0.777 31 H 0.182 0.818 32 H 0.184 0.816 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.140 0.860 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.198 0.802 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.511 -12.532 -7.102 20.446 hybrid contribution -0.509 0.120 -1.016 1.143 sum 14.002 -12.412 -8.119 20.397 Atomic orbital electron populations 1.22046 0.94731 1.03579 1.01369 1.22135 0.95365 0.79142 1.05757 1.44294 1.47148 1.12206 1.05374 1.22694 1.03008 0.92866 0.92607 1.21252 1.10311 0.98582 0.94858 1.22496 1.02861 0.96353 0.97093 1.20089 1.17235 0.94514 0.88163 1.17287 0.76989 0.84681 0.84206 1.90698 1.51032 1.20012 1.84115 1.47198 1.70513 1.07707 1.05718 1.22760 1.01934 0.81023 1.03123 1.21930 0.97450 0.98029 0.79970 1.24075 0.98261 0.97744 0.99869 1.21458 0.93758 0.91137 0.90059 1.42625 1.60561 1.30522 1.03845 1.19053 1.19453 1.02015 0.94660 0.91569 1.25268 0.99257 0.98981 1.00815 1.69845 1.35319 1.26828 1.30706 0.85747 0.78622 0.77148 0.82032 1.22960 1.21595 1.17383 1.23684 0.96352 0.97215 1.01838 0.95898 0.91399 0.88778 0.85459 0.89440 0.77736 0.81845 0.81635 0.89753 0.91029 0.89311 0.88838 0.86036 0.90420 0.91713 0.80161 0.93403 0.93897 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.16 16 2 C 0.10 2.19 6.19 86.38 0.53 2.72 16 3 N -0.42 -11.31 2.76 -511.00 -1.41 -12.72 16 4 C 0.02 0.52 11.37 83.48 0.95 1.47 16 5 C -0.23 -5.43 10.81 22.01 0.24 -5.19 16 6 C -0.16 -4.70 8.73 22.57 0.20 -4.50 16 7 C -0.09 -2.85 6.71 40.35 0.27 -2.58 16 8 C 0.58 20.82 7.41 86.45 0.64 21.46 16 9 O -0.58 -22.50 13.65 -4.34 -0.06 -22.55 16 10 N -0.58 -19.36 2.16 -824.35 -1.78 -21.14 16 11 C 0.05 1.66 6.93 127.77 0.89 2.54 16 12 C 0.13 3.93 4.15 45.52 0.19 4.12 16 13 C -0.16 -4.65 7.16 31.12 0.22 -4.43 16 14 C 0.15 5.45 4.55 45.52 0.21 5.65 16 15 N -0.73 -34.13 3.75 -320.45 -1.20 -35.33 16 16 C -0.22 -12.32 10.46 84.03 0.88 -11.44 16 17 H 0.07 3.99 8.06 -2.91 -0.02 3.96 16 18 C -0.05 -3.00 5.50 84.86 0.47 -2.54 16 19 N -0.98 -62.12 13.97 21.65 0.30 -61.81 16 20 Si 0.93 46.99 27.86 68.60 1.91 48.90 16 21 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 22 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 23 H -0.25 -11.53 4.86 99.48 0.48 -11.05 16 24 C -0.15 -5.05 7.11 31.12 0.22 -4.83 16 25 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 28 H 0.13 1.79 8.12 -2.38 -0.02 1.77 16 29 H 0.09 2.34 6.54 -2.39 -0.02 2.32 16 30 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.17 4.40 4.44 -2.91 -0.01 4.39 16 33 H 0.08 2.06 7.27 -2.39 -0.02 2.04 16 34 H 0.07 2.46 3.93 -2.39 -0.01 2.45 16 35 H 0.09 3.01 4.55 -2.39 -0.01 3.00 16 36 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.08 2.41 5.59 -2.39 -0.01 2.40 16 39 H 0.06 2.47 8.13 -2.39 -0.02 2.45 16 40 H 0.36 17.14 3.93 -92.71 -0.36 16.78 16 41 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 42 H 0.04 1.71 7.16 -2.39 -0.02 1.69 16 43 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -73.92 331.53 4.84 -69.08 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 0.44 Total: 36.28 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 6.64 Total: -0.69 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -4.09 Total: -131.01 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.06 Total: -22.55 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.91 Total: 48.90 kcal Total: -73.92 4.84 -69.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999840319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.883 kcal (2) G-P(sol) polarization free energy of solvation -73.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds