Wall clock time and date at job start Tue Mar 31 2020 07:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34772 * 119.99900 * 2 1 4 4 O 1.21695 * 119.99889 * 185.96858 * 3 2 1 5 5 C 1.46681 * 120.00125 * 5.96757 * 3 2 1 6 6 C 1.37866 * 126.23362 * 8.22322 * 5 3 2 7 7 C 1.39831 * 107.08651 * 180.02562 * 6 5 3 8 8 C 1.35450 * 107.86392 * 0.02562 * 7 6 5 9 9 N 1.35537 * 108.87467 * 359.73257 * 8 7 6 10 10 C 1.46492 * 125.68022 * 180.30081 * 9 8 7 11 11 C 1.46497 * 119.99870 * 179.97438 * 2 1 3 12 12 C 1.53079 * 109.44414 * 299.79858 * 11 2 1 13 13 C 1.53189 * 109.29516 * 181.23847 * 12 11 2 14 14 N 1.46925 * 108.89188 * 305.57232 * 13 12 11 15 15 C 1.36929 * 120.63493 * 233.51518 * 14 13 12 16 16 H 1.08002 * 120.00390 * 144.51145 * 15 14 13 17 17 C 1.38816 * 120.00075 * 324.51188 * 15 14 13 18 18 N 1.31617 * 119.99743 * 3.86085 * 17 15 14 19 19 Si 1.86802 * 120.00114 * 183.85357 * 17 15 14 20 20 H 1.48497 * 109.46918 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46795 * 119.99927 * 19 17 15 22 22 H 1.48496 * 109.47145 * 239.99952 * 19 17 15 23 23 C 1.46929 * 118.73720 * 53.54352 * 14 13 12 24 24 C 1.53036 * 109.46064 * 60.00092 * 11 2 1 25 25 H 1.08997 * 109.47046 * 273.81973 * 1 2 3 26 26 H 1.08995 * 109.47047 * 33.82230 * 1 2 3 27 27 H 1.09000 * 109.46611 * 153.81896 * 1 2 3 28 28 H 1.08001 * 126.45639 * 359.97438 * 6 5 3 29 29 H 1.08002 * 126.07106 * 180.02562 * 7 6 5 30 30 H 1.08004 * 125.56492 * 179.97438 * 8 7 6 31 31 H 1.09003 * 109.47173 * 274.74779 * 10 9 8 32 32 H 1.09003 * 109.47652 * 34.75284 * 10 9 8 33 33 H 1.09001 * 109.46980 * 154.75129 * 10 9 8 34 34 H 1.08995 * 109.46062 * 179.97438 * 11 2 1 35 35 H 1.08997 * 109.38809 * 61.35594 * 12 11 2 36 36 H 1.09006 * 109.62086 * 301.25441 * 12 11 2 37 37 H 1.09001 * 109.58348 * 185.71655 * 13 12 11 38 38 H 1.09000 * 109.58733 * 65.43536 * 13 12 11 39 39 H 0.97003 * 119.99864 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.58600 * 66.17543 * 23 14 13 41 41 H 1.08997 * 109.58759 * 186.45523 * 23 14 13 42 42 H 1.09004 * 109.50032 * 58.67597 * 24 11 2 43 43 H 1.09002 * 109.50108 * 298.57711 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3509 1.1700 -0.1096 5 6 1.4115 2.4340 0.1321 6 6 0.0711 2.5778 0.4208 7 6 -0.1980 3.9496 0.4504 8 6 0.9569 4.6054 0.1844 9 7 1.9438 3.6960 -0.0054 10 6 3.3433 4.0046 -0.3089 11 6 2.1975 -1.2687 0.0006 12 6 1.8311 -2.0681 1.2535 13 6 2.6220 -3.3800 1.2663 14 7 2.3843 -4.0911 0.0027 15 6 1.9511 -5.3900 0.0038 16 1 1.2647 -5.7311 -0.7571 17 6 2.3942 -6.2686 0.9830 18 7 3.1700 -5.8351 1.9538 19 14 1.8892 -8.0661 0.9229 20 1 1.0213 -8.2970 -0.2598 21 1 3.1015 -8.9176 0.8206 22 1 1.1438 -8.4124 2.1597 23 6 2.6210 -3.3820 -1.2622 24 6 1.8276 -2.0715 -1.2487 25 1 -0.3633 0.0685 1.0254 26 1 -0.3633 0.8537 -0.5720 27 1 -0.3632 -0.9223 -0.4534 28 1 -0.6377 1.7809 0.5913 29 1 -1.1566 4.4055 0.6498 30 1 1.0734 5.6781 0.1358 31 1 3.4601 4.1428 -1.3838 32 1 3.6344 4.9187 0.2087 33 1 3.9769 3.1819 0.0225 34 1 3.2691 -1.0694 0.0000 35 1 0.7633 -2.2870 1.2437 36 1 2.0756 -1.4872 2.1429 37 1 2.2912 -3.9979 2.1011 38 1 3.6854 -3.1646 1.3700 39 1 3.4799 -6.4491 2.6379 40 1 3.6841 -3.1645 -1.3658 41 1 2.2920 -4.0023 -2.0959 42 1 2.0691 -1.4909 -2.1391 43 1 0.7603 -2.2926 -1.2364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005120077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:04 Heat of formation + Delta-G solvation = 58.643132 kcal Electronic energy + Delta-G solvation = -23882.974890 eV Core-core repulsion = 20544.654637 eV Total energy + Delta-G solvation = -3338.320252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51420 -39.37652 -37.24193 -35.29940 -33.10901 -32.33276 -30.47488 -29.77887 -28.74309 -27.38643 -26.26812 -25.12496 -22.88062 -22.12047 -21.14801 -20.61219 -19.16697 -18.89880 -17.13550 -16.72329 -16.23661 -15.73199 -15.43782 -14.86617 -14.64521 -14.11690 -13.89729 -13.55696 -13.47352 -13.25778 -12.99720 -12.88672 -12.79980 -12.55720 -12.36725 -12.30481 -12.08695 -11.48588 -11.14512 -10.92314 -10.86865 -10.76127 -10.30268 -10.16245 -10.02866 -9.81432 -9.69832 -9.51324 -8.82419 -8.50374 -8.38935 -8.18117 -6.55923 -5.78615 -3.31958 1.48135 2.58234 2.66967 3.35482 3.38423 3.44232 3.44622 3.45950 4.47793 4.60542 4.72973 4.87085 5.09487 5.22092 5.30456 5.31973 5.36707 5.43588 5.46014 5.55242 5.57203 5.71126 5.79280 5.90401 5.96050 6.07368 6.13114 6.28124 6.38086 6.53980 6.61430 6.66637 6.68500 6.81311 6.90374 6.96400 7.00455 7.12364 7.43117 7.59934 7.78616 7.81587 8.32263 8.53024 9.24594 9.83235 10.43446 11.27654 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.037507 B = 0.003421 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.351580 B = 8182.092343 C = 8384.690194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.592 5.592 3 C 0.582 3.418 4 O -0.556 6.556 5 C -0.044 4.044 6 C -0.161 4.161 7 C -0.211 4.211 8 C 0.007 3.993 9 N -0.413 5.413 10 C 0.060 3.940 11 C 0.147 3.853 12 C -0.146 4.146 13 C 0.170 3.830 14 N -0.594 5.594 15 C -0.254 4.254 16 H 0.064 0.936 17 C 0.009 3.991 18 N -0.903 5.903 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.148 3.852 24 C -0.138 4.138 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.163 0.837 29 H 0.141 0.859 30 H 0.165 0.835 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.103 0.897 38 H 0.017 0.983 39 H 0.254 0.746 40 H 0.020 0.980 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 19.465 -3.546 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.323 5.323 3 C 0.372 3.628 4 O -0.437 6.437 5 C -0.157 4.157 6 C -0.187 4.187 7 C -0.236 4.236 8 C -0.128 4.128 9 N -0.085 5.085 10 C -0.081 4.081 11 C 0.046 3.954 12 C -0.186 4.186 13 C 0.044 3.956 14 N -0.317 5.317 15 C -0.384 4.384 16 H 0.082 0.918 17 C -0.190 4.190 18 N -0.548 5.548 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.021 3.979 24 C -0.178 4.178 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.180 0.820 29 H 0.158 0.842 30 H 0.183 0.817 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.121 0.879 38 H 0.035 0.965 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.922 19.381 -3.557 20.310 hybrid contribution -0.322 -0.713 0.063 0.785 sum -5.244 18.668 -3.495 19.703 Atomic orbital electron populations 1.22432 0.80148 1.03815 1.01790 1.47794 1.07028 1.05699 1.71740 1.17054 0.86328 0.82642 0.76799 1.90730 1.13779 1.87132 1.52064 1.20185 0.93861 0.85447 1.16233 1.22223 0.93950 0.97535 1.04983 1.20875 0.98116 0.93737 1.10828 1.21996 0.87991 0.95153 1.07703 1.43868 1.08873 1.04891 1.50910 1.22343 0.79491 1.04103 1.02129 1.21257 0.97162 0.80436 0.96563 1.22624 1.01750 0.99154 0.95101 1.20949 0.95068 0.88498 0.91122 1.44036 1.77788 1.10503 0.99388 1.19193 1.20861 0.85335 1.12974 0.91786 1.25341 0.97214 0.97986 0.98456 1.69898 1.37236 1.33697 1.13944 0.86208 0.77676 0.85357 0.77487 1.20223 1.21509 1.21664 1.20888 0.95757 0.90827 0.90427 1.22378 1.01381 0.98090 0.95969 0.92179 0.89742 0.90516 0.81959 0.84163 0.81732 0.90867 0.90182 0.87130 0.88731 0.92466 0.93172 0.87908 0.96497 0.93524 0.96229 0.92450 0.92968 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 7.74 59.85 0.46 1.20 16 2 N -0.59 -9.36 2.76 -175.41 -0.48 -9.84 16 3 C 0.58 9.73 7.62 -12.85 -0.10 9.63 16 4 O -0.56 -10.76 13.91 5.19 0.07 -10.69 16 5 C -0.04 -0.62 6.71 -81.98 -0.55 -1.17 16 6 C -0.16 -1.90 8.72 -39.12 -0.34 -2.24 16 7 C -0.21 -2.16 10.81 -39.98 -0.43 -2.60 16 8 C 0.01 0.07 11.38 -16.91 -0.19 -0.13 16 9 N -0.41 -5.03 3.16 -120.24 -0.38 -5.41 16 10 C 0.06 0.61 10.79 59.84 0.65 1.26 16 11 C 0.15 2.70 2.47 -67.87 -0.17 2.54 16 12 C -0.15 -2.88 5.36 -26.59 -0.14 -3.02 16 13 C 0.17 4.11 5.25 -3.71 -0.02 4.09 16 14 N -0.59 -14.90 3.00 -172.32 -0.52 -15.42 16 15 C -0.25 -6.90 9.55 -15.06 -0.14 -7.05 16 16 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 17 C 0.01 0.24 5.31 -17.43 -0.09 0.15 16 18 N -0.90 -25.98 10.64 55.49 0.59 -25.39 16 19 Si 0.90 21.47 29.56 -169.99 -5.02 16.45 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 24 C -0.14 -2.48 5.32 -26.61 -0.14 -2.62 16 25 H 0.06 0.66 7.41 -51.93 -0.39 0.28 16 26 H 0.08 0.88 5.19 -51.93 -0.27 0.61 16 27 H 0.08 0.93 6.46 -51.93 -0.34 0.60 16 28 H 0.16 1.62 4.47 -52.49 -0.23 1.38 16 29 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.17 1.06 8.06 -52.48 -0.42 0.63 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.11 1.40 5.94 -51.93 -0.31 1.09 16 34 H 0.09 1.96 6.91 -51.93 -0.36 1.60 16 35 H 0.06 1.10 7.72 -51.93 -0.40 0.70 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 2.78 5.94 -51.93 -0.31 2.47 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.08 6.72 -51.93 -0.35 0.73 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -31.99 333.71 -8.24 -40.23 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.29 Total: 1.87 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.24 Total: 3.17 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.79 Total: -56.06 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.99 -8.24 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005120077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.873 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds