Wall clock time and date at job start Tue Mar 31 2020 07:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34772 * 119.99900 * 2 1 4 4 O 1.21695 * 119.99889 * 185.96858 * 3 2 1 5 5 C 1.46681 * 120.00125 * 5.96757 * 3 2 1 6 6 C 1.37866 * 126.23362 * 8.22322 * 5 3 2 7 7 C 1.39831 * 107.08651 * 180.02562 * 6 5 3 8 8 C 1.35450 * 107.86392 * 0.02562 * 7 6 5 9 9 N 1.35537 * 108.87467 * 359.73257 * 8 7 6 10 10 C 1.46492 * 125.68022 * 180.30081 * 9 8 7 11 11 C 1.46497 * 119.99870 * 179.97438 * 2 1 3 12 12 C 1.53079 * 109.44414 * 299.79858 * 11 2 1 13 13 C 1.53189 * 109.29516 * 181.23847 * 12 11 2 14 14 N 1.46925 * 108.89188 * 305.57232 * 13 12 11 15 15 C 1.36929 * 120.63493 * 233.51518 * 14 13 12 16 16 H 1.08002 * 120.00390 * 144.51145 * 15 14 13 17 17 C 1.38816 * 120.00075 * 324.51188 * 15 14 13 18 18 N 1.31617 * 119.99743 * 3.86085 * 17 15 14 19 19 Si 1.86802 * 120.00114 * 183.85357 * 17 15 14 20 20 H 1.48497 * 109.46918 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46795 * 119.99927 * 19 17 15 22 22 H 1.48496 * 109.47145 * 239.99952 * 19 17 15 23 23 C 1.46929 * 118.73720 * 53.54352 * 14 13 12 24 24 C 1.53036 * 109.46064 * 60.00092 * 11 2 1 25 25 H 1.08997 * 109.47046 * 273.81973 * 1 2 3 26 26 H 1.08995 * 109.47047 * 33.82230 * 1 2 3 27 27 H 1.09000 * 109.46611 * 153.81896 * 1 2 3 28 28 H 1.08001 * 126.45639 * 359.97438 * 6 5 3 29 29 H 1.08002 * 126.07106 * 180.02562 * 7 6 5 30 30 H 1.08004 * 125.56492 * 179.97438 * 8 7 6 31 31 H 1.09003 * 109.47173 * 274.74779 * 10 9 8 32 32 H 1.09003 * 109.47652 * 34.75284 * 10 9 8 33 33 H 1.09001 * 109.46980 * 154.75129 * 10 9 8 34 34 H 1.08995 * 109.46062 * 179.97438 * 11 2 1 35 35 H 1.08997 * 109.38809 * 61.35594 * 12 11 2 36 36 H 1.09006 * 109.62086 * 301.25441 * 12 11 2 37 37 H 1.09001 * 109.58348 * 185.71655 * 13 12 11 38 38 H 1.09000 * 109.58733 * 65.43536 * 13 12 11 39 39 H 0.97003 * 119.99864 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.58600 * 66.17543 * 23 14 13 41 41 H 1.08997 * 109.58759 * 186.45523 * 23 14 13 42 42 H 1.09004 * 109.50032 * 58.67597 * 24 11 2 43 43 H 1.09002 * 109.50108 * 298.57711 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3509 1.1700 -0.1096 5 6 1.4115 2.4340 0.1321 6 6 0.0711 2.5778 0.4208 7 6 -0.1980 3.9496 0.4504 8 6 0.9569 4.6054 0.1844 9 7 1.9438 3.6960 -0.0054 10 6 3.3433 4.0046 -0.3089 11 6 2.1975 -1.2687 0.0006 12 6 1.8311 -2.0681 1.2535 13 6 2.6220 -3.3800 1.2663 14 7 2.3843 -4.0911 0.0027 15 6 1.9511 -5.3900 0.0038 16 1 1.2647 -5.7311 -0.7571 17 6 2.3942 -6.2686 0.9830 18 7 3.1700 -5.8351 1.9538 19 14 1.8892 -8.0661 0.9229 20 1 1.0213 -8.2970 -0.2598 21 1 3.1015 -8.9176 0.8206 22 1 1.1438 -8.4124 2.1597 23 6 2.6210 -3.3820 -1.2622 24 6 1.8276 -2.0715 -1.2487 25 1 -0.3633 0.0685 1.0254 26 1 -0.3633 0.8537 -0.5720 27 1 -0.3632 -0.9223 -0.4534 28 1 -0.6377 1.7809 0.5913 29 1 -1.1566 4.4055 0.6498 30 1 1.0734 5.6781 0.1358 31 1 3.4601 4.1428 -1.3838 32 1 3.6344 4.9187 0.2087 33 1 3.9769 3.1819 0.0225 34 1 3.2691 -1.0694 0.0000 35 1 0.7633 -2.2870 1.2437 36 1 2.0756 -1.4872 2.1429 37 1 2.2912 -3.9979 2.1011 38 1 3.6854 -3.1646 1.3700 39 1 3.4799 -6.4491 2.6379 40 1 3.6841 -3.1645 -1.3658 41 1 2.2920 -4.0023 -2.0959 42 1 2.0691 -1.4909 -2.1391 43 1 0.7603 -2.2926 -1.2364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005120077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:03 Heat of formation + Delta-G solvation = 39.770038 kcal Electronic energy + Delta-G solvation = -23883.793288 eV Core-core repulsion = 20544.654637 eV Total energy + Delta-G solvation = -3339.138651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.43107 -40.64821 -38.83255 -36.74646 -34.57159 -33.56579 -32.11785 -31.49245 -29.92856 -28.42658 -27.14297 -26.93164 -24.37268 -23.85290 -22.47065 -21.58136 -20.55484 -20.17125 -18.73904 -18.04309 -17.54015 -16.94326 -16.73211 -16.43337 -15.73901 -15.58512 -15.35188 -15.03981 -14.85238 -14.57868 -14.26219 -14.10493 -14.07639 -13.88814 -13.63649 -13.26460 -13.17687 -12.92108 -12.81382 -12.75405 -12.52264 -12.13857 -12.04974 -11.91371 -11.87921 -11.51714 -11.35218 -10.89934 -10.55404 -9.74410 -9.58346 -9.13406 -8.59538 -7.86700 -5.44024 0.49356 1.47679 1.49590 1.60009 1.62323 1.86586 2.31553 2.34553 2.50240 3.29827 3.53142 3.67483 3.91285 3.99786 4.05148 4.21485 4.23941 4.32649 4.36571 4.46200 4.50821 4.56287 4.61946 4.66345 4.70704 4.77201 4.87956 4.91997 5.02512 5.04753 5.13593 5.19366 5.28983 5.30292 5.48526 5.57542 5.64884 5.77120 5.89073 6.03284 6.34457 6.42541 6.45506 7.10310 7.16765 7.82436 8.38695 9.18023 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.037507 B = 0.003421 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.351580 B = 8182.092343 C = 8384.690194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.593 5.593 3 C 0.574 3.426 4 O -0.597 6.597 5 C -0.088 4.088 6 C -0.151 4.151 7 C -0.221 4.221 8 C 0.022 3.978 9 N -0.423 5.423 10 C 0.060 3.940 11 C 0.158 3.842 12 C -0.128 4.128 13 C 0.178 3.822 14 N -0.611 5.611 15 C -0.264 4.264 16 H 0.071 0.929 17 C -0.046 4.046 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.263 1.263 21 H -0.293 1.293 22 H -0.289 1.289 23 C 0.145 3.855 24 C -0.122 4.122 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.178 0.822 29 H 0.168 0.832 30 H 0.204 0.796 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.073 0.927 38 H -0.014 1.014 39 H 0.250 0.750 40 H 0.007 0.993 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.613 21.447 -4.350 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.323 5.323 3 C 0.366 3.634 4 O -0.481 6.481 5 C -0.201 4.201 6 C -0.177 4.177 7 C -0.244 4.244 8 C -0.113 4.113 9 N -0.097 5.097 10 C -0.081 4.081 11 C 0.055 3.945 12 C -0.168 4.168 13 C 0.052 3.948 14 N -0.334 5.334 15 C -0.394 4.394 16 H 0.088 0.912 17 C -0.241 4.241 18 N -0.581 5.581 19 Si 0.799 3.201 20 H -0.187 1.187 21 H -0.220 1.220 22 H -0.216 1.216 23 C 0.019 3.981 24 C -0.161 4.161 25 H 0.092 0.908 26 H 0.123 0.877 27 H 0.098 0.902 28 H 0.195 0.805 29 H 0.186 0.814 30 H 0.220 0.780 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.004 0.996 39 H 0.060 0.940 40 H 0.025 0.975 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.548 21.379 -4.385 23.092 hybrid contribution 0.483 -1.207 0.305 1.335 sum -7.065 20.172 -4.080 21.759 Atomic orbital electron populations 1.22688 0.77636 1.04916 1.03166 1.47705 1.08418 1.04436 1.71703 1.17535 0.86066 0.83744 0.76008 1.90707 1.15594 1.87776 1.54018 1.19967 0.94813 0.85110 1.20186 1.22527 0.93044 0.99044 1.03106 1.21280 0.99493 0.92999 1.10655 1.22736 0.87186 0.96596 1.04825 1.44117 1.09802 1.04716 1.51022 1.22377 0.78524 1.04165 1.03038 1.20837 0.95961 0.81753 0.95968 1.22334 1.01326 0.96923 0.96191 1.20654 0.93804 0.90091 0.90248 1.44263 1.77968 1.10560 1.00643 1.19541 1.20793 0.86303 1.12786 0.91185 1.26116 0.97704 1.02014 0.98303 1.70098 1.38719 1.34727 1.14596 0.85148 0.77109 0.80107 0.77742 1.18730 1.22041 1.21610 1.21004 0.95718 0.92294 0.89093 1.22173 1.01393 0.96196 0.96374 0.90754 0.87674 0.90211 0.80466 0.81428 0.77964 0.90031 0.86937 0.90333 0.91786 0.91368 0.92856 0.90902 0.99615 0.94009 0.97468 0.91611 0.91315 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.25 7.74 127.77 0.99 2.24 16 2 N -0.59 -18.35 2.76 -827.09 -2.28 -20.64 16 3 C 0.57 19.29 7.62 86.45 0.66 19.95 16 4 O -0.60 -24.12 13.91 -4.33 -0.06 -24.18 16 5 C -0.09 -2.38 6.71 40.35 0.27 -2.11 16 6 C -0.15 -3.13 8.72 22.57 0.20 -2.93 16 7 C -0.22 -3.64 10.81 22.01 0.24 -3.40 16 8 C 0.02 0.35 11.38 83.48 0.95 1.30 16 9 N -0.42 -9.50 3.16 -534.32 -1.69 -11.19 16 10 C 0.06 1.15 10.79 127.77 1.38 2.53 16 11 C 0.16 5.85 2.47 45.03 0.11 5.96 16 12 C -0.13 -5.10 5.36 30.68 0.16 -4.93 16 13 C 0.18 9.00 5.25 86.36 0.45 9.46 16 14 N -0.61 -31.24 3.00 -699.09 -2.10 -33.34 16 15 C -0.26 -14.47 9.55 84.04 0.80 -13.67 16 16 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 17 C -0.05 -2.57 5.31 84.86 0.45 -2.12 16 18 N -0.94 -55.60 10.64 21.65 0.23 -55.37 16 19 Si 0.97 44.56 29.56 68.60 2.03 46.59 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 C 0.15 6.22 6.52 86.36 0.56 6.78 16 24 C -0.12 -4.27 5.32 30.67 0.16 -4.11 16 25 H 0.07 1.43 7.41 -2.39 -0.02 1.42 16 26 H 0.11 1.89 5.19 -2.39 -0.01 1.87 16 27 H 0.08 1.71 6.46 -2.39 -0.02 1.70 16 28 H 0.18 2.93 4.47 -2.91 -0.01 2.92 16 29 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.20 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 2.06 5.94 -2.39 -0.01 2.05 16 34 H 0.06 2.79 6.91 -2.39 -0.02 2.77 16 35 H 0.07 2.57 7.72 -2.39 -0.02 2.56 16 36 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.07 4.12 5.94 -2.39 -0.01 4.11 16 38 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 39 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 42 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 43 H 0.07 2.46 6.72 -2.39 -0.02 2.45 16 Total: -1.00 -72.25 333.71 4.53 -67.72 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.01 Total: 15.47 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 7.39 Total: 14.94 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -5.84 Total: -120.54 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.06 Total: -24.18 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -72.25 4.53 -67.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005120077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.493 kcal (2) G-P(sol) polarization free energy of solvation -72.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds