Wall clock time and date at job start Tue Mar 31 2020 07:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 120.00271 * 2 1 4 4 O 1.21627 * 120.00076 * 185.96127 * 3 2 1 5 5 C 1.47261 * 120.00009 * 5.95335 * 3 2 1 6 6 C 1.46687 * 126.94277 * 5.92076 * 5 3 2 7 7 C 1.34489 * 106.33466 * 179.97438 * 6 5 3 8 8 N 1.36442 * 108.85485 * 359.97438 * 7 6 5 9 9 C 1.46499 * 124.85090 * 179.97438 * 8 7 6 10 10 C 1.34666 * 110.30045 * 359.74782 * 8 7 6 11 11 C 1.46498 * 119.99687 * 179.97438 * 2 1 3 12 12 C 1.53037 * 109.46276 * 299.93346 * 11 2 1 13 13 C 1.53194 * 109.31506 * 181.38754 * 12 11 2 14 14 N 1.46935 * 108.77341 * 305.36515 * 13 12 11 15 15 C 1.36934 * 120.62997 * 233.63053 * 14 13 12 16 16 H 1.08001 * 120.00214 * 150.36192 * 15 14 13 17 17 C 1.38809 * 120.00007 * 330.36254 * 15 14 13 18 18 N 1.31621 * 120.00232 * 166.91801 * 17 15 14 19 19 Si 1.86803 * 120.00188 * 346.91832 * 17 15 14 20 20 H 1.48503 * 109.47325 * 88.88944 * 19 17 15 21 21 H 1.48497 * 109.47308 * 208.89429 * 19 17 15 22 22 H 1.48500 * 109.46731 * 328.89410 * 19 17 15 23 23 C 1.46921 * 118.73840 * 53.60786 * 14 13 12 24 24 C 1.53040 * 109.45928 * 60.00209 * 11 2 1 25 25 H 1.09007 * 109.47124 * 275.56623 * 1 2 3 26 26 H 1.09003 * 109.46626 * 35.56027 * 1 2 3 27 27 H 1.08996 * 109.47569 * 155.56341 * 1 2 3 28 28 H 1.08008 * 126.83146 * 359.95430 * 6 5 3 29 29 H 1.07998 * 125.57316 * 180.02562 * 7 6 5 30 30 H 1.08994 * 109.47382 * 90.02183 * 9 8 7 31 31 H 1.09006 * 109.47257 * 210.02820 * 9 8 7 32 32 H 1.09002 * 109.47191 * 330.01869 * 9 8 7 33 33 H 1.07997 * 125.80096 * 180.28918 * 10 8 7 34 34 H 1.08999 * 109.44971 * 179.97438 * 11 2 1 35 35 H 1.09004 * 109.49757 * 301.33644 * 12 11 2 36 36 H 1.08998 * 109.49574 * 61.43404 * 12 11 2 37 37 H 1.08998 * 109.59076 * 185.57985 * 13 12 11 38 38 H 1.08995 * 109.70492 * 65.21944 * 13 12 11 39 39 H 0.97002 * 120.00290 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.59046 * 186.60747 * 23 14 13 41 41 H 1.08994 * 109.70721 * 66.24793 * 23 14 13 42 42 H 1.08997 * 109.50012 * 298.56626 * 24 11 2 43 43 H 1.09000 * 109.49781 * 58.66471 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3503 1.1700 -0.1094 5 6 1.4086 2.4391 0.1323 6 6 -0.0249 2.6097 0.3922 7 6 -0.2468 3.9355 0.4329 8 7 0.9331 4.5868 0.2198 9 6 1.0923 6.0428 0.1910 10 6 1.9312 3.7000 0.0446 11 6 2.1974 -1.2688 0.0006 12 6 1.8288 -2.0698 1.2514 13 6 2.6224 -3.3800 1.2661 14 7 2.3848 -4.0911 0.0024 15 6 1.9509 -5.3898 0.0036 16 1 1.3408 -5.7561 -0.8089 17 6 2.2951 -6.2357 1.0490 18 7 1.6805 -7.3909 1.1905 19 14 3.6307 -5.7345 2.2550 20 1 3.0255 -4.9667 3.3729 21 1 4.2948 -6.9496 2.7913 22 1 4.6335 -4.8885 1.5594 23 6 2.6211 -3.3819 -1.2624 24 6 1.8275 -2.0715 -1.2488 25 1 -0.3634 0.0997 1.0229 26 1 -0.3633 0.8361 -0.5977 27 1 -0.3634 -0.9355 -0.4251 28 1 -0.7567 1.8264 0.5243 29 1 -1.2025 4.4076 0.6067 30 1 1.3148 6.4039 1.1950 31 1 1.9106 6.3057 -0.4794 32 1 0.1699 6.5022 -0.1642 33 1 2.9677 3.9431 -0.1370 34 1 3.2690 -1.0692 0.0000 35 1 2.0710 -1.4877 2.1406 36 1 0.7615 -2.2909 1.2403 37 1 2.2919 -3.9981 2.1008 38 1 3.6858 -3.1645 1.3697 39 1 1.9207 -7.9818 1.9213 40 1 2.2897 -4.0010 -2.0960 41 1 3.6838 -3.1643 -1.3688 42 1 0.7603 -2.2927 -1.2364 43 1 2.0688 -1.4908 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005245709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:07 Heat of formation + Delta-G solvation = 64.221159 kcal Electronic energy + Delta-G solvation = -23675.844651 eV Core-core repulsion = 20337.766280 eV Total energy + Delta-G solvation = -3338.078371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44929 -39.50297 -37.45502 -35.17617 -33.26932 -32.17497 -30.40774 -30.28835 -29.36135 -27.24470 -26.69911 -24.93101 -22.91892 -22.52947 -21.24823 -20.49405 -19.27084 -19.00153 -17.33499 -16.76692 -16.26797 -15.72150 -15.61359 -15.05167 -14.82860 -14.26554 -14.12953 -13.70562 -13.64265 -13.29980 -13.04024 -13.01378 -12.90183 -12.81577 -12.50367 -12.27028 -12.17768 -11.90182 -11.70469 -11.28004 -10.86705 -10.75863 -10.43033 -10.06619 -9.99573 -9.71763 -9.51915 -9.38993 -8.77881 -8.62909 -8.56771 -8.20079 -6.89791 -5.88467 -3.29849 1.72406 2.26395 2.57847 3.34618 3.35516 3.52736 3.55582 3.66450 4.35514 4.56787 4.66763 4.70463 4.79296 4.95711 4.97620 5.04510 5.28890 5.33281 5.36382 5.36725 5.46394 5.66207 5.72738 5.77874 5.78917 5.90446 5.92361 6.12867 6.18993 6.28153 6.44400 6.51153 6.57014 6.64639 6.69350 6.74658 6.78870 6.97133 6.99211 7.01133 7.72959 8.03627 8.38526 8.51080 8.98684 9.76574 10.15264 11.27724 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035961 B = 0.003458 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.433304 B = 8095.995367 C = 8189.972258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.603 5.603 3 C 0.587 3.413 4 O -0.559 6.559 5 C -0.226 4.226 6 C -0.181 4.181 7 C -0.024 4.024 8 N -0.450 5.450 9 C 0.069 3.931 10 C 0.069 3.931 11 C 0.146 3.854 12 C -0.138 4.138 13 C 0.123 3.877 14 N -0.608 5.608 15 C -0.257 4.257 16 H 0.086 0.914 17 C 0.020 3.980 18 N -0.916 5.916 19 Si 0.893 3.107 20 H -0.289 1.289 21 H -0.306 1.306 22 H -0.269 1.269 23 C 0.152 3.848 24 C -0.140 4.140 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.173 0.827 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.025 0.975 42 H 0.065 0.935 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.127 26.747 -2.085 27.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.334 5.334 3 C 0.378 3.622 4 O -0.439 6.439 5 C -0.236 4.236 6 C -0.205 4.205 7 C -0.150 4.150 8 N -0.125 5.125 9 C -0.072 4.072 10 C -0.066 4.066 11 C 0.044 3.956 12 C -0.178 4.178 13 C -0.003 4.003 14 N -0.332 5.332 15 C -0.385 4.385 16 H 0.104 0.896 17 C -0.178 4.178 18 N -0.560 5.560 19 Si 0.725 3.275 20 H -0.217 1.217 21 H -0.234 1.234 22 H -0.194 1.194 23 C 0.026 3.974 24 C -0.180 4.180 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.180 0.820 29 H 0.182 0.818 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.190 0.810 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.043 0.957 42 H 0.083 0.917 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.506 26.922 -2.076 27.375 hybrid contribution 0.490 0.273 0.880 1.044 sum -4.016 27.195 -1.196 27.515 Atomic orbital electron populations 1.22302 0.80342 1.03429 1.01380 1.47794 1.06816 1.05814 1.72934 1.17434 0.86266 0.82812 0.75725 1.90742 1.13993 1.87403 1.51729 1.20414 0.94256 0.92470 1.16488 1.22851 0.95067 0.95478 1.07062 1.21838 0.89952 0.92713 1.10482 1.43633 1.07614 1.06587 1.54712 1.22102 1.04198 0.77421 1.03521 1.21770 0.93795 0.87970 1.03033 1.21094 0.97448 0.81311 0.95744 1.22368 1.01793 0.97366 0.96314 1.21438 0.96588 0.91788 0.90511 1.44375 1.78515 1.10958 0.99367 1.18944 1.25852 0.84412 1.09317 0.89630 1.25332 0.98446 0.95186 0.98833 1.69764 1.42608 1.11054 1.32587 0.86878 0.83551 0.76122 0.80969 1.21664 1.23427 1.19371 1.20880 0.96092 0.91027 0.89432 1.22376 1.01596 0.97709 0.96324 0.92694 0.90057 0.90829 0.82038 0.81753 0.90735 0.89667 0.89657 0.80980 0.88669 0.92663 0.91473 0.90694 0.95264 0.92796 0.91554 0.95686 0.91662 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 7.71 59.85 0.46 1.28 16 2 N -0.60 -9.40 2.76 -175.22 -0.48 -9.89 16 3 C 0.59 9.76 7.65 -12.59 -0.10 9.66 16 4 O -0.56 -11.14 16.26 5.25 0.09 -11.05 16 5 C -0.23 -3.01 6.07 -103.35 -0.63 -3.64 16 6 C -0.18 -1.88 8.86 -37.50 -0.33 -2.21 16 7 C -0.02 -0.20 11.34 -16.83 -0.19 -0.39 16 8 N -0.45 -3.74 3.09 -124.53 -0.38 -4.12 16 9 C 0.07 0.27 11.03 59.85 0.66 0.93 16 10 C 0.07 0.77 11.12 -16.84 -0.19 0.58 16 11 C 0.15 2.62 2.47 -67.89 -0.17 2.45 16 12 C -0.14 -2.61 5.34 -26.61 -0.14 -2.76 16 13 C 0.12 2.79 4.14 -3.70 -0.02 2.77 16 14 N -0.61 -14.80 2.78 -172.32 -0.48 -15.28 16 15 C -0.26 -7.27 10.08 -15.06 -0.15 -7.43 16 16 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 17 C 0.02 0.60 5.35 -17.43 -0.09 0.51 16 18 N -0.92 -28.51 13.97 55.49 0.78 -27.74 16 19 Si 0.89 23.15 24.22 -169.99 -4.12 19.04 16 20 H -0.29 -7.20 6.52 56.52 0.37 -6.83 16 21 H -0.31 -8.04 7.11 56.52 0.40 -7.64 16 22 H -0.27 -6.87 6.32 56.52 0.36 -6.52 16 23 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 24 C -0.14 -2.45 5.32 -26.61 -0.14 -2.59 16 25 H 0.05 0.60 7.44 -51.92 -0.39 0.21 16 26 H 0.08 0.83 5.20 -51.93 -0.27 0.56 16 27 H 0.07 0.89 6.47 -51.93 -0.34 0.56 16 28 H 0.16 1.42 4.76 -52.48 -0.25 1.17 16 29 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.25 8.13 -51.93 -0.42 -0.17 16 32 H 0.08 0.19 8.13 -51.93 -0.42 -0.23 16 33 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.10 1.90 6.91 -51.93 -0.36 1.54 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.25 7.72 -51.93 -0.40 0.85 16 37 H 0.08 1.84 4.17 -51.93 -0.22 1.62 16 38 H 0.03 0.67 6.82 -51.93 -0.35 0.32 16 39 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 40 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 1.12 6.72 -51.93 -0.35 0.78 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -35.36 331.48 -7.01 -42.37 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.35 Total: -0.59 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.05 Total: 2.27 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.57 Total: -57.02 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.12 Total: 19.04 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.36 -7.01 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005245709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.588 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds