Wall clock time and date at job start Tue Mar 31 2020 07:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 120.00271 * 2 1 4 4 O 1.21627 * 120.00076 * 185.96127 * 3 2 1 5 5 C 1.47261 * 120.00009 * 5.95335 * 3 2 1 6 6 C 1.46687 * 126.94277 * 5.92076 * 5 3 2 7 7 C 1.34489 * 106.33466 * 179.97438 * 6 5 3 8 8 N 1.36442 * 108.85485 * 359.97438 * 7 6 5 9 9 C 1.46499 * 124.85090 * 179.97438 * 8 7 6 10 10 C 1.34666 * 110.30045 * 359.74782 * 8 7 6 11 11 C 1.46498 * 119.99687 * 179.97438 * 2 1 3 12 12 C 1.53037 * 109.46276 * 299.93346 * 11 2 1 13 13 C 1.53194 * 109.31506 * 181.38754 * 12 11 2 14 14 N 1.46935 * 108.77341 * 305.36515 * 13 12 11 15 15 C 1.36934 * 120.62997 * 233.63053 * 14 13 12 16 16 H 1.08001 * 120.00214 * 150.36192 * 15 14 13 17 17 C 1.38809 * 120.00007 * 330.36254 * 15 14 13 18 18 N 1.31621 * 120.00232 * 166.91801 * 17 15 14 19 19 Si 1.86803 * 120.00188 * 346.91832 * 17 15 14 20 20 H 1.48503 * 109.47325 * 88.88944 * 19 17 15 21 21 H 1.48497 * 109.47308 * 208.89429 * 19 17 15 22 22 H 1.48500 * 109.46731 * 328.89410 * 19 17 15 23 23 C 1.46921 * 118.73840 * 53.60786 * 14 13 12 24 24 C 1.53040 * 109.45928 * 60.00209 * 11 2 1 25 25 H 1.09007 * 109.47124 * 275.56623 * 1 2 3 26 26 H 1.09003 * 109.46626 * 35.56027 * 1 2 3 27 27 H 1.08996 * 109.47569 * 155.56341 * 1 2 3 28 28 H 1.08008 * 126.83146 * 359.95430 * 6 5 3 29 29 H 1.07998 * 125.57316 * 180.02562 * 7 6 5 30 30 H 1.08994 * 109.47382 * 90.02183 * 9 8 7 31 31 H 1.09006 * 109.47257 * 210.02820 * 9 8 7 32 32 H 1.09002 * 109.47191 * 330.01869 * 9 8 7 33 33 H 1.07997 * 125.80096 * 180.28918 * 10 8 7 34 34 H 1.08999 * 109.44971 * 179.97438 * 11 2 1 35 35 H 1.09004 * 109.49757 * 301.33644 * 12 11 2 36 36 H 1.08998 * 109.49574 * 61.43404 * 12 11 2 37 37 H 1.08998 * 109.59076 * 185.57985 * 13 12 11 38 38 H 1.08995 * 109.70492 * 65.21944 * 13 12 11 39 39 H 0.97002 * 120.00290 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.59046 * 186.60747 * 23 14 13 41 41 H 1.08994 * 109.70721 * 66.24793 * 23 14 13 42 42 H 1.08997 * 109.50012 * 298.56626 * 24 11 2 43 43 H 1.09000 * 109.49781 * 58.66471 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3503 1.1700 -0.1094 5 6 1.4086 2.4391 0.1323 6 6 -0.0249 2.6097 0.3922 7 6 -0.2468 3.9355 0.4329 8 7 0.9331 4.5868 0.2198 9 6 1.0923 6.0428 0.1910 10 6 1.9312 3.7000 0.0446 11 6 2.1974 -1.2688 0.0006 12 6 1.8288 -2.0698 1.2514 13 6 2.6224 -3.3800 1.2661 14 7 2.3848 -4.0911 0.0024 15 6 1.9509 -5.3898 0.0036 16 1 1.3408 -5.7561 -0.8089 17 6 2.2951 -6.2357 1.0490 18 7 1.6805 -7.3909 1.1905 19 14 3.6307 -5.7345 2.2550 20 1 3.0255 -4.9667 3.3729 21 1 4.2948 -6.9496 2.7913 22 1 4.6335 -4.8885 1.5594 23 6 2.6211 -3.3819 -1.2624 24 6 1.8275 -2.0715 -1.2488 25 1 -0.3634 0.0997 1.0229 26 1 -0.3633 0.8361 -0.5977 27 1 -0.3634 -0.9355 -0.4251 28 1 -0.7567 1.8264 0.5243 29 1 -1.2025 4.4076 0.6067 30 1 1.3148 6.4039 1.1950 31 1 1.9106 6.3057 -0.4794 32 1 0.1699 6.5022 -0.1642 33 1 2.9677 3.9431 -0.1370 34 1 3.2690 -1.0692 0.0000 35 1 2.0710 -1.4877 2.1406 36 1 0.7615 -2.2909 1.2403 37 1 2.2919 -3.9981 2.1008 38 1 3.6858 -3.1645 1.3697 39 1 1.9207 -7.9818 1.9213 40 1 2.2897 -4.0010 -2.0960 41 1 3.6838 -3.1643 -1.3688 42 1 0.7603 -2.2927 -1.2364 43 1 2.0688 -1.4908 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005245709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:07 Heat of formation + Delta-G solvation = 40.950775 kcal Electronic energy + Delta-G solvation = -23676.853731 eV Core-core repulsion = 20337.766280 eV Total energy + Delta-G solvation = -3339.087451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.21174 -40.76328 -39.03502 -36.62668 -34.55675 -33.59357 -32.04636 -31.98480 -30.12897 -28.27342 -27.55872 -26.56392 -24.56367 -24.00313 -22.57704 -21.30337 -20.71724 -20.04689 -18.81016 -18.15370 -17.68138 -17.06125 -16.50410 -16.42058 -15.98207 -15.85313 -15.40769 -15.08417 -14.86720 -14.58578 -14.53035 -14.21013 -14.06154 -13.90922 -13.71024 -13.46266 -13.30196 -13.09048 -13.00274 -12.67410 -12.48775 -12.24370 -12.12327 -11.93963 -11.73868 -11.46064 -11.32398 -10.90730 -10.69234 -9.66425 -9.46708 -9.19327 -8.94116 -8.15416 -5.53348 0.78200 1.27846 1.40483 1.48794 1.56748 1.91397 2.25739 2.40018 2.57601 3.09580 3.28271 3.69241 3.94647 3.99926 4.03874 4.10021 4.20022 4.27487 4.31773 4.36470 4.46008 4.48495 4.61128 4.63457 4.65477 4.70497 4.76219 4.84513 4.90122 4.93111 5.03463 5.06302 5.07534 5.11601 5.15980 5.41394 5.65023 5.80490 5.87981 6.11334 6.13524 6.38588 6.57305 6.89550 7.29981 7.59590 8.01861 9.04326 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035961 B = 0.003458 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.433304 B = 8095.995367 C = 8189.972258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.602 5.602 3 C 0.580 3.420 4 O -0.605 6.605 5 C -0.263 4.263 6 C -0.196 4.196 7 C -0.010 4.010 8 N -0.443 5.443 9 C 0.061 3.939 10 C 0.065 3.935 11 C 0.153 3.847 12 C -0.125 4.125 13 C 0.119 3.881 14 N -0.620 5.620 15 C -0.244 4.244 16 H 0.058 0.942 17 C -0.035 4.035 18 N -0.961 5.961 19 Si 0.950 3.050 20 H -0.273 1.273 21 H -0.312 1.312 22 H -0.265 1.265 23 C 0.148 3.852 24 C -0.125 4.125 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.175 0.825 29 H 0.203 0.797 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.174 0.826 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 30.319 -1.776 31.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.332 5.332 3 C 0.373 3.627 4 O -0.489 6.489 5 C -0.273 4.273 6 C -0.219 4.219 7 C -0.137 4.137 8 N -0.117 5.117 9 C -0.079 4.079 10 C -0.073 4.073 11 C 0.049 3.951 12 C -0.165 4.165 13 C -0.007 4.007 14 N -0.345 5.345 15 C -0.373 4.373 16 H 0.076 0.924 17 C -0.229 4.229 18 N -0.607 5.607 19 Si 0.781 3.219 20 H -0.200 1.200 21 H -0.241 1.241 22 H -0.190 1.190 23 C 0.022 3.978 24 C -0.165 4.165 25 H 0.087 0.913 26 H 0.120 0.880 27 H 0.091 0.909 28 H 0.192 0.808 29 H 0.220 0.780 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.192 0.808 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.783 30.565 -1.776 31.158 hybrid contribution 0.824 -0.706 0.706 1.294 sum -4.959 29.860 -1.070 30.287 Atomic orbital electron populations 1.22536 0.77986 1.04273 1.02758 1.47769 1.08156 1.04659 1.72637 1.18002 0.85952 0.83993 0.74781 1.90701 1.16037 1.88097 1.54081 1.20331 0.95907 0.91525 1.19547 1.23005 0.93775 0.97026 1.08094 1.22424 0.91061 0.92208 1.08014 1.43951 1.06917 1.08069 1.52779 1.22444 1.06001 0.74729 1.04728 1.21861 0.94582 0.88145 1.02684 1.20791 0.96618 0.82433 0.95230 1.22186 1.01274 0.95570 0.97490 1.21432 0.97030 0.93075 0.89117 1.44484 1.78655 1.10027 1.01296 1.18895 1.24364 0.86134 1.07953 0.92397 1.25928 1.00517 0.95372 1.01087 1.69887 1.44430 1.12533 1.33887 0.85933 0.80943 0.75574 0.79495 1.19985 1.24082 1.18975 1.21033 0.96841 0.92119 0.87787 1.22190 1.01274 0.96031 0.96974 0.91282 0.87968 0.90944 0.80841 0.78030 0.89570 0.88744 0.87238 0.80840 0.90949 0.91495 0.90971 0.92438 0.95401 0.92919 0.91589 0.95353 0.91050 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.43 7.71 127.77 0.98 2.41 16 2 N -0.60 -18.04 2.76 -826.51 -2.28 -20.32 16 3 C 0.58 19.01 7.65 86.62 0.66 19.67 16 4 O -0.61 -24.55 16.26 -4.12 -0.07 -24.62 16 5 C -0.26 -6.62 6.07 -19.04 -0.12 -6.74 16 6 C -0.20 -3.50 8.86 23.62 0.21 -3.29 16 7 C -0.01 -0.13 11.34 83.12 0.94 0.81 16 8 N -0.44 -5.91 3.09 -547.89 -1.69 -7.60 16 9 C 0.06 0.25 11.03 127.77 1.41 1.66 16 10 C 0.06 1.33 11.12 83.91 0.93 2.27 16 11 C 0.15 5.33 2.47 45.02 0.11 5.44 16 12 C -0.13 -4.59 5.34 30.67 0.16 -4.42 16 13 C 0.12 5.32 4.14 86.36 0.36 5.68 16 14 N -0.62 -30.11 2.78 -699.09 -1.94 -32.06 16 15 C -0.24 -14.04 10.08 84.03 0.85 -13.20 16 16 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 17 C -0.03 -2.06 5.35 84.86 0.45 -1.61 16 18 N -0.96 -61.20 13.97 21.65 0.30 -60.89 16 19 Si 0.95 48.39 24.22 68.60 1.66 50.06 16 20 H -0.27 -13.08 6.52 99.48 0.65 -12.43 16 21 H -0.31 -16.05 7.11 99.48 0.71 -15.35 16 22 H -0.26 -13.17 6.32 99.48 0.63 -12.54 16 23 C 0.15 5.99 6.52 86.37 0.56 6.55 16 24 C -0.13 -4.22 5.32 30.67 0.16 -4.06 16 25 H 0.07 1.31 7.44 -2.38 -0.02 1.30 16 26 H 0.10 1.81 5.20 -2.39 -0.01 1.80 16 27 H 0.07 1.59 6.47 -2.39 -0.02 1.57 16 28 H 0.17 2.48 4.76 -2.91 -0.01 2.47 16 29 H 0.20 0.96 8.06 -2.91 -0.02 0.93 16 30 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.09 0.25 8.13 -2.38 -0.02 0.23 16 32 H 0.11 -0.03 8.13 -2.39 -0.02 -0.05 16 33 H 0.17 3.36 8.06 -2.91 -0.02 3.33 16 34 H 0.07 2.90 6.91 -2.39 -0.02 2.88 16 35 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.07 2.57 7.72 -2.39 -0.02 2.55 16 37 H 0.06 2.78 4.17 -2.39 -0.01 2.77 16 38 H 0.03 1.26 6.82 -2.39 -0.02 1.25 16 39 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 40 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 2.34 6.72 -2.39 -0.02 2.32 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -78.61 331.48 4.54 -74.08 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.87 Total: 10.19 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 7.69 Total: 11.17 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -5.61 Total: -120.87 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.07 Total: -24.62 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 1.66 Total: 50.06 kcal Total: -78.61 4.54 -74.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005245709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.026 kcal (2) G-P(sol) polarization free energy of solvation -78.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds