Wall clock time and date at job start Tue Mar 31 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46984 * 2 1 4 4 C 1.35535 * 125.67666 * 261.80028 * 3 2 1 5 5 C 1.35446 * 108.87360 * 179.97438 * 4 3 2 6 6 C 1.39836 * 107.86591 * 359.74368 * 5 4 3 7 7 C 1.37647 * 125.68268 * 81.77679 * 3 2 1 8 8 C 1.46687 * 126.22834 * 0.02562 * 7 3 2 9 9 O 1.21690 * 120.00009 * 5.69901 * 8 7 3 10 10 N 1.34778 * 119.99526 * 185.70036 * 8 7 3 11 11 C 1.46502 * 119.99617 * 185.18551 * 10 8 7 12 12 H 1.08994 * 109.49786 * 325.06174 * 11 10 8 13 13 C 1.53043 * 109.49355 * 204.99985 * 11 10 8 14 14 C 1.53045 * 109.53381 * 178.68405 * 13 11 10 15 15 C 1.53185 * 109.31599 * 61.36716 * 14 13 11 16 16 N 1.46924 * 108.77484 * 305.36422 * 15 14 13 17 17 C 1.36935 * 120.63393 * 233.33765 * 16 15 14 18 18 H 1.07996 * 120.00716 * 147.72907 * 17 16 15 19 19 C 1.38814 * 119.99562 * 327.72647 * 17 16 15 20 20 N 1.31618 * 120.00148 * 167.93453 * 19 17 16 21 21 Si 1.86805 * 120.00071 * 347.93410 * 19 17 16 22 22 H 1.48491 * 109.47047 * 85.72442 * 21 19 17 23 23 H 1.48498 * 109.46896 * 205.72724 * 21 19 17 24 24 H 1.48495 * 109.46905 * 325.72257 * 21 19 17 25 25 C 1.46933 * 118.73921 * 53.60697 * 16 15 14 26 26 H 1.09000 * 109.46947 * 299.99816 * 1 2 3 27 27 H 1.09000 * 109.47244 * 60.00097 * 1 2 3 28 28 H 1.08998 * 109.47028 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46981 * 239.99397 * 2 1 3 30 30 H 1.09000 * 109.47244 * 119.99903 * 2 1 3 31 31 H 1.08004 * 125.56302 * 0.02562 * 4 3 2 32 32 H 1.07999 * 126.07084 * 180.02562 * 5 4 3 33 33 H 1.08001 * 126.45979 * 180.30042 * 6 5 4 34 34 H 0.96996 * 120.00121 * 5.18633 * 10 8 7 35 35 H 1.08999 * 109.46172 * 58.66610 * 13 11 10 36 36 H 1.09000 * 109.45280 * 298.69317 * 13 11 10 37 37 H 1.09003 * 109.49652 * 301.40910 * 14 13 11 38 38 H 1.09004 * 109.49412 * 181.31789 * 14 13 11 39 39 H 1.09000 * 109.58755 * 185.57990 * 15 14 13 40 40 H 1.09002 * 109.58712 * 65.14701 * 15 14 13 41 41 H 0.97000 * 120.00301 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.58666 * 66.18099 * 25 16 15 43 43 H 1.09005 * 109.58348 * 186.60724 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4298 2.0742 -1.0897 5 6 2.8088 3.3154 -0.7023 6 6 2.6236 3.4084 0.6806 7 6 2.1352 2.1915 1.1066 8 6 1.7958 1.8284 2.4867 9 8 1.4646 0.6879 2.7519 10 7 1.8508 2.7581 3.4609 11 6 1.6230 2.3718 4.8556 12 1 0.8755 1.5796 4.8963 13 6 1.1261 3.5840 5.6467 14 6 0.8566 3.1736 7.0962 15 6 2.1594 2.6811 7.7340 16 7 2.7199 1.6107 6.8982 17 6 3.0414 0.3961 7.4427 18 1 2.9480 -0.5027 6.8514 19 6 3.4876 0.3202 8.7550 20 7 3.5698 -0.8481 9.3556 21 14 3.9714 1.8761 9.6686 22 1 2.7639 2.4864 10.2806 23 1 4.9505 1.5406 10.7335 24 1 4.5844 2.8380 8.7178 25 6 2.9346 1.8702 5.4680 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.4512 1.6982 -2.1020 32 1 3.1830 4.0965 -1.3475 33 1 2.8267 4.2704 1.2989 34 1 2.0412 3.6828 3.2387 35 1 0.2058 3.9580 5.1981 36 1 1.8845 4.3667 5.6259 37 1 0.1165 2.3736 7.1162 38 1 0.4805 4.0318 7.6533 39 1 1.9543 2.2954 8.7327 40 1 2.8698 3.5054 7.7971 41 1 3.8820 -0.9012 10.2725 42 1 3.7082 2.6283 5.3463 43 1 3.2410 0.9494 4.9715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009531775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:11 Heat of formation + Delta-G solvation = 34.061791 kcal Electronic energy + Delta-G solvation = -23743.130875 eV Core-core repulsion = 20403.744696 eV Total energy + Delta-G solvation = -3339.386179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45725 -39.25118 -37.46239 -34.74589 -33.97297 -32.49424 -30.81959 -30.18719 -29.40539 -28.35987 -25.29551 -23.81107 -23.35105 -21.97863 -21.65184 -20.55520 -19.87323 -19.15511 -17.79817 -16.78952 -15.91394 -15.67086 -15.34206 -15.20833 -14.72917 -14.33784 -13.92455 -13.87519 -13.80014 -13.58334 -13.20059 -12.88489 -12.57526 -12.45160 -12.34888 -12.33170 -12.10132 -12.03202 -11.47407 -11.32983 -11.13269 -10.95719 -10.76457 -10.12068 -9.97658 -9.77821 -9.65465 -9.46895 -8.96623 -8.84115 -8.55735 -8.25654 -6.88206 -5.89967 -3.34842 1.50126 2.60362 2.67544 3.30964 3.43100 3.47559 3.50805 3.53231 4.53804 4.58289 4.77506 4.86916 4.92050 5.06387 5.15293 5.20024 5.25242 5.29207 5.30664 5.42877 5.52174 5.54744 5.68793 5.83222 5.94375 5.95611 5.97775 6.04232 6.10759 6.20935 6.31664 6.42827 6.55198 6.60715 6.64235 6.70881 6.79330 6.92589 6.95975 7.14386 7.70677 8.04301 8.37153 8.41905 8.97537 9.74012 10.11574 11.26202 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024255 B = 0.003906 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.112893 B = 7166.434731 C = 7553.398870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.406 5.406 4 C 0.009 3.991 5 C -0.209 4.209 6 C -0.147 4.147 7 C -0.043 4.043 8 C 0.584 3.416 9 O -0.541 6.541 10 N -0.711 5.711 11 C 0.127 3.873 12 H 0.092 0.908 13 C -0.116 4.116 14 C -0.131 4.131 15 C 0.116 3.884 16 N -0.603 5.603 17 C -0.259 4.259 18 H 0.085 0.915 19 C 0.024 3.976 20 N -0.914 5.914 21 Si 0.896 3.104 22 H -0.286 1.286 23 H -0.305 1.305 24 H -0.272 1.272 25 C 0.145 3.855 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.165 0.835 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.397 0.603 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.263 0.737 42 H 0.023 0.977 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 9.963 -19.785 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.026 4.026 3 N -0.079 5.079 4 C -0.127 4.127 5 C -0.234 4.234 6 C -0.173 4.173 7 C -0.157 4.157 8 C 0.371 3.629 9 O -0.420 6.420 10 N -0.362 5.362 11 C 0.022 3.978 12 H 0.110 0.890 13 C -0.154 4.154 14 C -0.171 4.171 15 C -0.010 4.010 16 N -0.327 5.327 17 C -0.388 4.388 18 H 0.103 0.897 19 C -0.175 4.175 20 N -0.558 5.558 21 Si 0.727 3.273 22 H -0.214 1.214 23 H -0.233 1.233 24 H -0.197 1.197 25 C 0.018 3.982 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.182 0.818 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.231 0.769 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.341 8.619 -19.386 21.878 hybrid contribution 0.439 1.315 0.385 1.439 sum -4.902 9.934 -19.002 21.995 Atomic orbital electron populations 1.22055 0.94047 1.03109 1.02719 1.22058 0.96014 0.79554 1.04982 1.44097 1.46365 1.11633 1.05850 1.21974 1.05366 0.93491 0.91827 1.20776 1.09917 0.97280 0.95384 1.21327 1.04359 0.96002 0.95619 1.20205 1.14371 0.92662 0.88450 1.17000 0.77443 0.85216 0.83242 1.90822 1.48038 1.19670 1.83450 1.45751 1.72341 1.11003 1.07088 1.21721 1.00600 0.97722 0.77748 0.89010 1.21680 1.00418 0.96931 0.96401 1.21988 1.00094 1.00500 0.94484 1.21524 0.92310 0.91338 0.95796 1.44262 1.72563 1.12418 1.03451 1.18947 1.38509 0.84038 0.97274 0.89714 1.25390 0.98312 0.96323 0.97472 1.69763 1.50012 1.23337 1.12653 0.86843 0.77590 0.83904 0.78961 1.21406 1.23331 1.19693 1.21233 0.92645 0.99068 0.85278 0.91392 0.92596 0.90675 0.89466 0.87415 0.81755 0.84255 0.84051 0.76883 0.92366 0.92009 0.91430 0.92220 0.90598 0.95526 0.92729 0.95872 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 10.19 37.16 0.38 -1.25 16 2 C 0.09 1.01 6.12 -4.04 -0.02 0.99 16 3 N -0.41 -4.86 2.76 -112.87 -0.31 -5.17 16 4 C 0.01 0.09 11.36 -16.91 -0.19 -0.11 16 5 C -0.21 -2.10 10.81 -39.98 -0.43 -2.53 16 6 C -0.15 -1.66 10.35 -39.12 -0.40 -2.06 16 7 C -0.04 -0.58 6.88 -81.98 -0.56 -1.14 16 8 C 0.58 9.26 7.74 -12.85 -0.10 9.16 16 9 O -0.54 -10.37 13.99 5.20 0.07 -10.30 16 10 N -0.71 -10.15 5.05 -54.99 -0.28 -10.43 16 11 C 0.13 2.18 2.65 -67.81 -0.18 2.00 16 12 H 0.09 1.83 7.51 -51.93 -0.39 1.44 16 13 C -0.12 -1.72 5.35 -26.69 -0.14 -1.86 16 14 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 15 C 0.12 2.50 4.14 -3.72 -0.02 2.48 16 16 N -0.60 -14.68 2.74 -172.32 -0.47 -15.15 16 17 C -0.26 -7.49 10.06 -15.06 -0.15 -7.65 16 18 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 19 C 0.02 0.70 5.35 -17.43 -0.09 0.61 16 20 N -0.91 -28.64 13.97 55.49 0.78 -27.86 16 21 Si 0.90 22.75 24.23 -169.99 -4.12 18.63 16 22 H -0.29 -6.90 6.41 56.52 0.36 -6.53 16 23 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 24 H -0.27 -6.76 6.57 56.52 0.37 -6.39 16 25 C 0.14 3.03 6.09 -3.71 -0.02 3.00 16 26 H 0.07 0.86 7.70 -51.93 -0.40 0.46 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.67 8.11 -51.93 -0.42 0.25 16 30 H 0.11 1.42 6.69 -51.93 -0.35 1.07 16 31 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.14 1.28 7.49 -52.49 -0.39 0.89 16 34 H 0.40 4.43 7.55 -40.82 -0.31 4.12 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.80 4.41 -51.93 -0.23 1.57 16 40 H 0.03 0.57 6.89 -51.93 -0.36 0.21 16 41 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 1.52 7.93 -51.93 -0.41 1.11 16 LS Contribution 339.78 15.07 5.12 5.12 Total: -1.00 -33.90 339.78 -8.01 -41.91 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.69 Total: 4.00 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.11 Total: -0.75 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.29 Total: -58.62 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.30 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.12 Total: 18.63 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.90 -8.01 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009531775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.967 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds