Wall clock time and date at job start Tue Mar 31 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46984 * 2 1 4 4 C 1.35535 * 125.67666 * 261.80028 * 3 2 1 5 5 C 1.35446 * 108.87360 * 179.97438 * 4 3 2 6 6 C 1.39836 * 107.86591 * 359.74368 * 5 4 3 7 7 C 1.37647 * 125.68268 * 81.77679 * 3 2 1 8 8 C 1.46687 * 126.22834 * 0.02562 * 7 3 2 9 9 O 1.21690 * 120.00009 * 5.69901 * 8 7 3 10 10 N 1.34778 * 119.99526 * 185.70036 * 8 7 3 11 11 C 1.46502 * 119.99617 * 185.18551 * 10 8 7 12 12 H 1.08994 * 109.49786 * 325.06174 * 11 10 8 13 13 C 1.53043 * 109.49355 * 204.99985 * 11 10 8 14 14 C 1.53045 * 109.53381 * 178.68405 * 13 11 10 15 15 C 1.53185 * 109.31599 * 61.36716 * 14 13 11 16 16 N 1.46924 * 108.77484 * 305.36422 * 15 14 13 17 17 C 1.36935 * 120.63393 * 233.33765 * 16 15 14 18 18 H 1.07996 * 120.00716 * 147.72907 * 17 16 15 19 19 C 1.38814 * 119.99562 * 327.72647 * 17 16 15 20 20 N 1.31618 * 120.00148 * 167.93453 * 19 17 16 21 21 Si 1.86805 * 120.00071 * 347.93410 * 19 17 16 22 22 H 1.48491 * 109.47047 * 85.72442 * 21 19 17 23 23 H 1.48498 * 109.46896 * 205.72724 * 21 19 17 24 24 H 1.48495 * 109.46905 * 325.72257 * 21 19 17 25 25 C 1.46933 * 118.73921 * 53.60697 * 16 15 14 26 26 H 1.09000 * 109.46947 * 299.99816 * 1 2 3 27 27 H 1.09000 * 109.47244 * 60.00097 * 1 2 3 28 28 H 1.08998 * 109.47028 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46981 * 239.99397 * 2 1 3 30 30 H 1.09000 * 109.47244 * 119.99903 * 2 1 3 31 31 H 1.08004 * 125.56302 * 0.02562 * 4 3 2 32 32 H 1.07999 * 126.07084 * 180.02562 * 5 4 3 33 33 H 1.08001 * 126.45979 * 180.30042 * 6 5 4 34 34 H 0.96996 * 120.00121 * 5.18633 * 10 8 7 35 35 H 1.08999 * 109.46172 * 58.66610 * 13 11 10 36 36 H 1.09000 * 109.45280 * 298.69317 * 13 11 10 37 37 H 1.09003 * 109.49652 * 301.40910 * 14 13 11 38 38 H 1.09004 * 109.49412 * 181.31789 * 14 13 11 39 39 H 1.09000 * 109.58755 * 185.57990 * 15 14 13 40 40 H 1.09002 * 109.58712 * 65.14701 * 15 14 13 41 41 H 0.97000 * 120.00301 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.58666 * 66.18099 * 25 16 15 43 43 H 1.09005 * 109.58348 * 186.60724 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4298 2.0742 -1.0897 5 6 2.8088 3.3154 -0.7023 6 6 2.6236 3.4084 0.6806 7 6 2.1352 2.1915 1.1066 8 6 1.7958 1.8284 2.4867 9 8 1.4646 0.6879 2.7519 10 7 1.8508 2.7581 3.4609 11 6 1.6230 2.3718 4.8556 12 1 0.8755 1.5796 4.8963 13 6 1.1261 3.5840 5.6467 14 6 0.8566 3.1736 7.0962 15 6 2.1594 2.6811 7.7340 16 7 2.7199 1.6107 6.8982 17 6 3.0414 0.3961 7.4427 18 1 2.9480 -0.5027 6.8514 19 6 3.4876 0.3202 8.7550 20 7 3.5698 -0.8481 9.3556 21 14 3.9714 1.8761 9.6686 22 1 2.7639 2.4864 10.2806 23 1 4.9505 1.5406 10.7335 24 1 4.5844 2.8380 8.7178 25 6 2.9346 1.8702 5.4680 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.4512 1.6982 -2.1020 32 1 3.1830 4.0965 -1.3475 33 1 2.8267 4.2704 1.2989 34 1 2.0412 3.6828 3.2387 35 1 0.2058 3.9580 5.1981 36 1 1.8845 4.3667 5.6259 37 1 0.1165 2.3736 7.1162 38 1 0.4805 4.0318 7.6533 39 1 1.9543 2.2954 8.7327 40 1 2.8698 3.5054 7.7971 41 1 3.8820 -0.9012 10.2725 42 1 3.7082 2.6283 5.3463 43 1 3.2410 0.9494 4.9715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009531775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:10 Heat of formation + Delta-G solvation = 10.451910 kcal Electronic energy + Delta-G solvation = -23744.154676 eV Core-core repulsion = 20403.744696 eV Total energy + Delta-G solvation = -3340.409981 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.34794 -40.55308 -38.98791 -36.11913 -35.06289 -34.23488 -32.70844 -31.47867 -30.22814 -29.52755 -27.23161 -24.90148 -24.42501 -23.74906 -22.91166 -21.50836 -21.27487 -20.29982 -18.81305 -18.76299 -17.42404 -17.12459 -16.54991 -16.45385 -15.96208 -15.58035 -15.45339 -15.23634 -14.93938 -14.77634 -14.64927 -14.51031 -14.07618 -13.75374 -13.45398 -13.30749 -13.20658 -13.11516 -12.88119 -12.79862 -12.61323 -12.45633 -12.17115 -11.83194 -11.66658 -11.51931 -11.34237 -11.05009 -10.74373 -10.22571 -9.67062 -9.15332 -8.86154 -8.18753 -5.61766 0.52464 1.28964 1.40794 1.51562 1.69600 1.87704 2.32999 2.39666 2.44309 3.08903 3.30456 3.75112 3.79862 3.89163 4.02218 4.08548 4.08943 4.18659 4.31465 4.35867 4.41492 4.47009 4.50599 4.63184 4.68907 4.73824 4.86481 4.91334 4.98339 5.02499 5.07026 5.12703 5.18860 5.21785 5.31453 5.36997 5.52419 5.84853 5.88249 6.06104 6.09286 6.37650 6.59743 6.88305 7.24836 7.55937 7.95770 9.01728 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024255 B = 0.003906 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.112893 B = 7166.434731 C = 7553.398870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.093 3.907 3 N -0.417 5.417 4 C 0.022 3.978 5 C -0.219 4.219 6 C -0.134 4.134 7 C -0.088 4.088 8 C 0.577 3.423 9 O -0.589 6.589 10 N -0.697 5.697 11 C 0.142 3.858 12 H 0.054 0.946 13 C -0.106 4.106 14 C -0.125 4.125 15 C 0.107 3.893 16 N -0.618 5.618 17 C -0.259 4.259 18 H 0.031 0.969 19 C -0.037 4.037 20 N -0.966 5.966 21 Si 0.970 3.030 22 H -0.260 1.260 23 H -0.311 1.311 24 H -0.257 1.257 25 C 0.147 3.853 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.072 0.928 31 H 0.202 0.798 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.416 0.584 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.100 0.900 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.264 0.736 42 H 0.043 0.957 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.145 14.326 -21.828 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.028 4.028 3 N -0.091 5.091 4 C -0.114 4.114 5 C -0.242 4.242 6 C -0.161 4.161 7 C -0.200 4.200 8 C 0.367 3.633 9 O -0.471 6.471 10 N -0.349 5.349 11 C 0.036 3.964 12 H 0.072 0.928 13 C -0.144 4.144 14 C -0.165 4.165 15 C -0.017 4.017 16 N -0.344 5.344 17 C -0.388 4.388 18 H 0.049 0.951 19 C -0.231 4.231 20 N -0.611 5.611 21 Si 0.797 3.203 22 H -0.186 1.186 23 H -0.240 1.240 24 H -0.181 1.181 25 C 0.020 3.980 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.141 0.859 30 H 0.090 0.910 31 H 0.219 0.781 32 H 0.185 0.815 33 H 0.181 0.819 34 H 0.254 0.746 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.470 13.060 -21.466 25.715 hybrid contribution 0.474 -0.136 0.846 0.980 sum -4.995 12.924 -20.620 24.843 Atomic orbital electron populations 1.21981 0.93761 1.03586 1.01774 1.22076 0.96275 0.79504 1.04909 1.44294 1.46716 1.11897 1.06146 1.22707 1.02808 0.93252 0.92611 1.21185 1.09840 0.98125 0.95036 1.21716 1.02223 0.95442 0.96718 1.20029 1.17938 0.94411 0.87662 1.17510 0.76491 0.84628 0.84658 1.90801 1.50257 1.21694 1.84350 1.45484 1.72008 1.11808 1.05589 1.21272 0.97249 0.98349 0.79580 0.92752 1.21651 1.02663 0.95753 0.94302 1.21920 0.97008 1.01354 0.96192 1.21679 0.94865 0.90502 0.94653 1.44325 1.73430 1.11634 1.04976 1.18750 1.38268 0.84683 0.97123 0.95080 1.26178 0.98393 1.00123 0.98426 1.69937 1.51754 1.26218 1.13232 0.85651 0.77757 0.79505 0.77383 1.18618 1.24037 1.18099 1.21269 0.95330 0.97862 0.83511 0.94847 0.90730 0.89590 0.85935 0.90995 0.78122 0.81515 0.81939 0.74578 0.89168 0.89264 0.93258 0.88168 0.92833 0.93626 0.92733 0.93932 0.95571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 10.19 71.98 0.73 -2.37 16 2 C 0.09 1.99 6.12 86.38 0.53 2.52 16 3 N -0.42 -9.52 2.76 -511.01 -1.41 -10.93 16 4 C 0.02 0.35 11.36 83.48 0.95 1.30 16 5 C -0.22 -3.57 10.81 22.01 0.24 -3.33 16 6 C -0.13 -2.68 10.35 22.57 0.23 -2.45 16 7 C -0.09 -2.32 6.88 40.35 0.28 -2.05 16 8 C 0.58 18.97 7.74 86.45 0.67 19.64 16 9 O -0.59 -24.56 13.99 -4.32 -0.06 -24.62 16 10 N -0.70 -19.48 5.05 -446.12 -2.25 -21.74 16 11 C 0.14 4.86 2.65 45.07 0.12 4.98 16 12 H 0.05 2.29 7.51 -2.39 -0.02 2.27 16 13 C -0.11 -2.76 5.35 30.62 0.16 -2.60 16 14 C -0.13 -3.92 6.08 30.67 0.19 -3.74 16 15 C 0.11 4.42 4.14 86.36 0.36 4.78 16 16 N -0.62 -30.73 2.74 -699.10 -1.92 -32.65 16 17 C -0.26 -15.84 10.06 84.03 0.85 -15.00 16 18 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 19 C -0.04 -2.25 5.35 84.86 0.45 -1.80 16 20 N -0.97 -63.44 13.97 21.65 0.30 -63.14 16 21 Si 0.97 47.35 24.23 68.60 1.66 49.01 16 22 H -0.26 -11.56 6.41 99.48 0.64 -10.92 16 23 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 24 H -0.26 -11.79 6.57 99.48 0.65 -11.14 16 25 C 0.15 6.28 6.09 86.36 0.53 6.81 16 26 H 0.03 0.90 7.70 -2.39 -0.02 0.88 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.12 1.67 8.11 -2.39 -0.02 1.65 16 30 H 0.07 2.07 6.69 -2.39 -0.02 2.05 16 31 H 0.20 1.64 8.06 -2.91 -0.02 1.61 16 32 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 33 H 0.16 2.36 7.49 -2.91 -0.02 2.34 16 34 H 0.42 8.21 7.55 -92.71 -0.70 7.51 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.05 2.44 4.41 -2.39 -0.01 2.43 16 40 H 0.05 1.74 6.89 -2.39 -0.02 1.72 16 41 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.03 1.29 7.93 -2.38 -0.02 1.27 16 Total: -1.00 -81.63 339.78 2.79 -78.85 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.18 Total: 18.51 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 6.28 Total: 6.71 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -5.28 Total: -128.45 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.06 Total: -24.62 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.66 Total: 49.01 kcal Total: -81.63 2.79 -78.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009531775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.299 kcal (2) G-P(sol) polarization free energy of solvation -81.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds