Wall clock time and date at job start Tue Mar 31 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47025 * 2 1 4 4 C 1.36442 * 124.85282 * 265.20163 * 3 2 1 5 5 C 1.34487 * 108.85900 * 180.26569 * 4 3 2 6 6 C 1.46686 * 106.32996 * 359.73779 * 5 4 3 7 7 C 1.47268 * 126.94111 * 179.97438 * 6 5 4 8 8 O 1.21627 * 120.00082 * 180.02562 * 7 6 5 9 9 N 1.34780 * 120.00074 * 0.04467 * 7 6 5 10 10 C 1.46494 * 119.99780 * 179.97438 * 9 7 6 11 11 H 1.08999 * 112.85111 * 23.80745 * 10 9 7 12 12 C 1.53791 * 113.60962 * 154.99979 * 10 9 7 13 13 C 1.53779 * 87.07856 * 139.98440 * 12 10 9 14 14 H 1.09006 * 113.61129 * 220.02028 * 13 12 10 15 15 N 1.46496 * 113.62114 * 89.20045 * 13 12 10 16 16 C 1.36931 * 120.00388 * 154.99914 * 15 13 12 17 17 H 1.07999 * 119.99904 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00094 * 179.97438 * 16 15 13 19 19 N 1.31624 * 120.00036 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00181 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47269 * 89.99606 * 20 18 16 22 22 H 1.48493 * 109.47041 * 210.00166 * 20 18 16 23 23 H 1.48509 * 109.46868 * 329.99769 * 20 18 16 24 24 C 1.53781 * 113.61359 * 252.49143 * 10 9 7 25 25 C 1.34660 * 124.85034 * 84.99791 * 3 2 1 26 26 C 1.50703 * 125.80248 * 0.02562 * 25 3 2 27 27 H 1.09004 * 109.46770 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47488 * 299.99896 * 1 2 3 29 29 H 1.08997 * 109.47306 * 60.00187 * 1 2 3 30 30 H 1.08995 * 109.47502 * 239.99554 * 2 1 3 31 31 H 1.09006 * 109.47127 * 120.00008 * 2 1 3 32 32 H 1.08005 * 125.57212 * 359.97438 * 4 3 2 33 33 H 1.07998 * 126.83540 * 179.75819 * 5 4 3 34 34 H 0.96998 * 119.99377 * 0.02562 * 9 7 6 35 35 H 1.09005 * 113.61240 * 254.52672 * 12 10 9 36 36 H 1.08999 * 113.61453 * 25.34679 * 12 10 9 37 37 H 0.97000 * 119.99613 * 334.99966 * 15 13 12 38 38 H 0.96999 * 120.00117 * 180.02562 * 19 18 16 39 39 H 1.08992 * 113.61772 * 334.57322 * 24 10 9 40 40 H 1.09004 * 113.61104 * 105.47711 * 24 10 9 41 41 H 1.09002 * 109.47152 * 269.71648 * 26 25 3 42 42 H 1.09001 * 109.46980 * 149.71748 * 26 25 3 43 43 H 1.09004 * 109.47113 * 29.71729 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3665 2.0851 -1.1157 5 6 2.7737 3.3124 -0.7460 6 6 2.6585 3.3623 0.7155 7 6 2.9880 4.4997 1.5910 8 8 2.8438 4.4023 2.7947 9 7 3.4490 5.6487 1.0582 10 6 3.7761 6.7804 1.9291 11 1 4.0065 6.4760 2.9501 12 6 4.8119 7.7433 1.3249 13 6 3.9713 8.8900 1.9109 14 1 3.8852 9.7511 1.2481 15 7 4.3527 9.2590 3.2763 16 6 4.0951 10.5206 3.7420 17 1 3.6110 11.2439 3.1024 18 6 4.4560 10.8700 5.0360 19 7 4.2088 12.0830 5.4834 20 14 5.2938 9.6193 6.1420 21 1 6.7658 9.7149 5.9710 22 1 4.9408 9.8955 7.5576 23 1 4.8406 8.2532 5.7763 24 6 2.7663 7.9369 1.8419 25 6 2.1839 2.1388 1.1009 26 6 1.9011 1.7093 2.5174 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.3265 1.7155 -2.1298 33 1 3.1169 4.1038 -1.3958 34 1 3.5633 5.7265 0.0982 35 1 5.8023 7.6556 1.7715 36 1 4.8363 7.7306 0.2352 37 1 4.7877 8.6095 3.8506 38 1 4.4614 12.3273 6.3875 39 1 2.2306 7.9782 0.8937 40 1 2.1054 8.0055 2.7060 41 1 0.8691 1.9512 2.7713 42 1 2.5745 2.2319 3.1968 43 1 2.0553 0.6340 2.6087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020498441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:19 Heat of formation + Delta-G solvation = 42.106616 kcal Electronic energy + Delta-G solvation = -22770.449314 eV Core-core repulsion = 19431.411985 eV Total energy + Delta-G solvation = -3339.037330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.59060 -39.46854 -37.77619 -34.42951 -33.97880 -32.50838 -31.71150 -30.35402 -29.50655 -26.62244 -25.11473 -24.83533 -23.76425 -22.60141 -21.82175 -20.11299 -19.36737 -18.53504 -17.66430 -17.40741 -16.09431 -15.92798 -15.45540 -14.99282 -14.74392 -14.36641 -14.18992 -13.82791 -13.65032 -13.26960 -13.09409 -12.95148 -12.86047 -12.62577 -12.55186 -12.23391 -12.10207 -11.96429 -11.93138 -11.75856 -11.64325 -10.89446 -10.75010 -10.30847 -10.16876 -9.80389 -9.58870 -9.46927 -8.88332 -8.83989 -8.59141 -8.25625 -7.24711 -5.74410 -3.10499 1.71666 2.26237 2.52446 3.43419 3.48824 3.50837 3.63956 3.70390 4.18658 4.45669 4.51956 4.63263 4.66424 4.72674 4.98784 5.04207 5.07941 5.09781 5.19462 5.27611 5.31714 5.40604 5.49120 5.51529 5.54166 5.73534 5.77838 5.85229 5.86833 6.05681 6.11313 6.22683 6.40121 6.60686 6.64152 6.69681 6.81791 6.89476 7.02580 7.06181 7.88553 8.03084 8.45111 8.60449 9.22921 9.95513 10.14405 11.43550 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.030912 B = 0.002989 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.593430 B = 9365.086981 C = 9875.660110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.443 5.443 4 C -0.020 4.020 5 C -0.167 4.167 6 C -0.234 4.234 7 C 0.587 3.413 8 O -0.552 6.552 9 N -0.713 5.713 10 C 0.125 3.875 11 H 0.109 0.891 12 C -0.165 4.165 13 C 0.176 3.824 14 H 0.076 0.924 15 N -0.730 5.730 16 C -0.246 4.246 17 H 0.092 0.908 18 C 0.006 3.994 19 N -0.933 5.933 20 Si 0.881 3.119 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.274 1.274 24 C -0.182 4.182 25 C 0.104 3.896 26 C -0.094 4.094 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.164 0.836 33 H 0.144 0.856 34 H 0.396 0.604 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.363 0.637 38 H 0.260 0.740 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 -26.853 -16.304 31.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 N -0.120 5.120 4 C -0.146 4.146 5 C -0.191 4.191 6 C -0.243 4.243 7 C 0.376 3.624 8 O -0.432 6.432 9 N -0.362 5.362 10 C 0.020 3.980 11 H 0.127 0.873 12 C -0.205 4.205 13 C 0.064 3.936 14 H 0.094 0.906 15 N -0.370 5.370 16 C -0.376 4.376 17 H 0.110 0.890 18 C -0.190 4.190 19 N -0.580 5.580 20 Si 0.711 3.289 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.200 1.200 24 C -0.224 4.224 25 C -0.012 4.012 26 C -0.151 4.151 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.230 0.770 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.285 -26.976 -15.411 31.514 hybrid contribution 0.559 -0.860 0.191 1.043 sum -4.726 -27.836 -15.220 32.075 Atomic orbital electron populations 1.22175 0.94180 1.03061 1.03473 1.21878 0.95714 0.80542 1.04430 1.43729 1.50596 1.11832 1.05864 1.21637 1.08406 0.93373 0.91171 1.21998 1.06570 0.97248 0.93326 1.20220 1.15500 0.95158 0.93451 1.17401 0.76299 0.81743 0.86988 1.90738 1.54540 1.82888 1.15033 1.45846 1.66746 1.13302 1.10342 1.22596 0.96800 0.83275 0.95286 0.87296 1.23907 0.98829 0.97406 1.00369 1.20862 0.91784 0.93557 0.87394 0.90595 1.42543 1.71596 1.12744 1.10116 1.19097 1.33324 0.87746 0.97411 0.88983 1.24668 1.00951 0.96267 0.97086 1.69701 1.52606 1.18151 1.17535 0.86586 0.79783 0.81675 0.80830 1.21004 1.21638 1.20019 1.24269 0.99224 0.97245 1.01668 1.20307 1.00832 0.90705 0.89352 1.20570 1.03845 1.00728 0.89953 0.90658 0.91625 0.91751 0.88998 0.89214 0.81833 0.83805 0.77017 0.91073 0.89933 0.80374 0.93020 0.90878 0.90977 0.90564 0.87981 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.24 37.16 0.38 -0.41 16 2 C 0.10 0.49 6.45 -4.04 -0.03 0.46 16 3 N -0.44 -3.88 2.68 -112.52 -0.30 -4.18 16 4 C -0.02 -0.17 11.33 -16.83 -0.19 -0.36 16 5 C -0.17 -1.71 10.56 -37.50 -0.40 -2.10 16 6 C -0.23 -3.10 6.29 -103.35 -0.65 -3.75 16 7 C 0.59 9.46 7.81 -12.59 -0.10 9.36 16 8 O -0.55 -10.82 14.41 5.25 0.08 -10.75 16 9 N -0.71 -10.24 5.35 -54.14 -0.29 -10.53 16 10 C 0.12 2.10 4.12 -67.12 -0.28 1.82 16 11 H 0.11 2.16 7.46 -51.93 -0.39 1.77 16 12 C -0.17 -2.58 7.58 -25.91 -0.20 -2.78 16 13 C 0.18 3.42 4.56 -67.12 -0.31 3.12 16 14 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 15 N -0.73 -17.68 5.12 -52.64 -0.27 -17.95 16 16 C -0.25 -7.05 10.45 -15.06 -0.16 -7.21 16 17 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 18 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 19 N -0.93 -29.69 13.97 55.49 0.78 -28.92 16 20 Si 0.88 22.77 27.74 -169.99 -4.71 18.05 16 21 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 23 H -0.27 -6.83 6.52 56.52 0.37 -6.46 16 24 C -0.18 -3.24 7.68 -25.92 -0.20 -3.44 16 25 C 0.10 1.21 6.89 -81.88 -0.56 0.65 16 26 C -0.09 -0.99 9.52 36.01 0.34 -0.64 16 27 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.29 8.11 -51.93 -0.42 -0.13 16 31 H 0.09 0.39 7.05 -51.93 -0.37 0.02 16 32 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.14 1.16 7.70 -52.49 -0.40 0.75 16 34 H 0.40 4.48 7.85 -40.82 -0.32 4.16 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 37 H 0.36 8.78 5.76 -40.82 -0.24 8.54 16 38 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 1.33 6.46 -51.93 -0.34 1.00 16 43 H 0.06 0.46 7.01 -51.93 -0.36 0.09 16 LS Contribution 354.02 15.07 5.34 5.34 Total: -1.00 -35.40 354.02 -8.47 -43.87 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -6.65 Total: 10.26 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -2.43 Total: -5.19 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.09 Total: -61.58 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.71 Total: 18.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.40 -8.47 -43.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020498441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.976 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds