Wall clock time and date at job start Tue Mar 31 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47025 * 2 1 4 4 C 1.36442 * 124.85282 * 265.20163 * 3 2 1 5 5 C 1.34487 * 108.85900 * 180.26569 * 4 3 2 6 6 C 1.46686 * 106.32996 * 359.73779 * 5 4 3 7 7 C 1.47268 * 126.94111 * 179.97438 * 6 5 4 8 8 O 1.21627 * 120.00082 * 180.02562 * 7 6 5 9 9 N 1.34780 * 120.00074 * 0.04467 * 7 6 5 10 10 C 1.46494 * 119.99780 * 179.97438 * 9 7 6 11 11 H 1.08999 * 112.85111 * 23.80745 * 10 9 7 12 12 C 1.53791 * 113.60962 * 154.99979 * 10 9 7 13 13 C 1.53779 * 87.07856 * 139.98440 * 12 10 9 14 14 H 1.09006 * 113.61129 * 220.02028 * 13 12 10 15 15 N 1.46496 * 113.62114 * 89.20045 * 13 12 10 16 16 C 1.36931 * 120.00388 * 154.99914 * 15 13 12 17 17 H 1.07999 * 119.99904 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00094 * 179.97438 * 16 15 13 19 19 N 1.31624 * 120.00036 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00181 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47269 * 89.99606 * 20 18 16 22 22 H 1.48493 * 109.47041 * 210.00166 * 20 18 16 23 23 H 1.48509 * 109.46868 * 329.99769 * 20 18 16 24 24 C 1.53781 * 113.61359 * 252.49143 * 10 9 7 25 25 C 1.34660 * 124.85034 * 84.99791 * 3 2 1 26 26 C 1.50703 * 125.80248 * 0.02562 * 25 3 2 27 27 H 1.09004 * 109.46770 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47488 * 299.99896 * 1 2 3 29 29 H 1.08997 * 109.47306 * 60.00187 * 1 2 3 30 30 H 1.08995 * 109.47502 * 239.99554 * 2 1 3 31 31 H 1.09006 * 109.47127 * 120.00008 * 2 1 3 32 32 H 1.08005 * 125.57212 * 359.97438 * 4 3 2 33 33 H 1.07998 * 126.83540 * 179.75819 * 5 4 3 34 34 H 0.96998 * 119.99377 * 0.02562 * 9 7 6 35 35 H 1.09005 * 113.61240 * 254.52672 * 12 10 9 36 36 H 1.08999 * 113.61453 * 25.34679 * 12 10 9 37 37 H 0.97000 * 119.99613 * 334.99966 * 15 13 12 38 38 H 0.96999 * 120.00117 * 180.02562 * 19 18 16 39 39 H 1.08992 * 113.61772 * 334.57322 * 24 10 9 40 40 H 1.09004 * 113.61104 * 105.47711 * 24 10 9 41 41 H 1.09002 * 109.47152 * 269.71648 * 26 25 3 42 42 H 1.09001 * 109.46980 * 149.71748 * 26 25 3 43 43 H 1.09004 * 109.47113 * 29.71729 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3665 2.0851 -1.1157 5 6 2.7737 3.3124 -0.7460 6 6 2.6585 3.3623 0.7155 7 6 2.9880 4.4997 1.5910 8 8 2.8438 4.4023 2.7947 9 7 3.4490 5.6487 1.0582 10 6 3.7761 6.7804 1.9291 11 1 4.0065 6.4760 2.9501 12 6 4.8119 7.7433 1.3249 13 6 3.9713 8.8900 1.9109 14 1 3.8852 9.7511 1.2481 15 7 4.3527 9.2590 3.2763 16 6 4.0951 10.5206 3.7420 17 1 3.6110 11.2439 3.1024 18 6 4.4560 10.8700 5.0360 19 7 4.2088 12.0830 5.4834 20 14 5.2938 9.6193 6.1420 21 1 6.7658 9.7149 5.9710 22 1 4.9408 9.8955 7.5576 23 1 4.8406 8.2532 5.7763 24 6 2.7663 7.9369 1.8419 25 6 2.1839 2.1388 1.1009 26 6 1.9011 1.7093 2.5174 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.3265 1.7155 -2.1298 33 1 3.1169 4.1038 -1.3958 34 1 3.5633 5.7265 0.0982 35 1 5.8023 7.6556 1.7715 36 1 4.8363 7.7306 0.2352 37 1 4.7877 8.6095 3.8506 38 1 4.4614 12.3273 6.3875 39 1 2.2306 7.9782 0.8937 40 1 2.1054 8.0055 2.7060 41 1 0.8691 1.9512 2.7713 42 1 2.5745 2.2319 3.1968 43 1 2.0553 0.6340 2.6087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020498441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:18 Heat of formation + Delta-G solvation = 17.926698 kcal Electronic energy + Delta-G solvation = -22771.497834 eV Core-core repulsion = 19431.411985 eV Total energy + Delta-G solvation = -3340.085850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.33328 -40.79308 -39.16515 -35.77568 -34.99893 -34.12983 -32.52169 -32.30100 -30.21359 -27.50721 -26.52404 -26.22608 -24.93177 -23.91324 -22.88719 -21.09315 -20.64239 -19.82770 -19.44669 -18.32040 -17.37723 -16.89176 -16.52349 -16.33445 -16.03416 -15.61539 -15.42391 -14.91662 -14.70199 -14.63418 -14.21688 -14.11631 -13.79844 -13.77649 -13.68809 -13.58694 -13.29135 -12.98593 -12.89084 -12.74713 -12.48963 -12.41325 -12.21519 -12.10558 -11.84466 -11.76356 -11.33168 -10.95087 -10.75916 -9.97529 -9.49679 -9.31581 -9.06888 -8.04634 -5.37691 0.76762 1.36255 1.38768 1.45319 1.55691 1.88079 2.45783 2.52349 2.60571 3.25196 3.49104 3.70280 3.81568 3.82760 3.87542 4.02784 4.11437 4.14862 4.25544 4.27327 4.38149 4.42394 4.59997 4.65926 4.78500 4.82767 4.84392 4.86596 4.98409 5.01079 5.08442 5.13459 5.21333 5.23136 5.27247 5.35886 5.69246 5.79121 5.83946 6.15077 6.21126 6.40634 6.78397 7.05317 7.44586 7.82573 7.99302 9.16632 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.030912 B = 0.002989 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.593430 B = 9365.086981 C = 9875.660110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.088 3.912 3 N -0.437 5.437 4 C -0.008 4.008 5 C -0.180 4.180 6 C -0.270 4.270 7 C 0.579 3.421 8 O -0.600 6.600 9 N -0.699 5.699 10 C 0.129 3.871 11 H 0.075 0.925 12 C -0.137 4.137 13 C 0.155 3.845 14 H 0.078 0.922 15 N -0.737 5.737 16 C -0.230 4.230 17 H 0.065 0.935 18 C -0.061 4.061 19 N -0.981 5.981 20 Si 0.948 3.052 21 H -0.273 1.273 22 H -0.294 1.294 23 H -0.264 1.264 24 C -0.172 4.172 25 C 0.092 3.908 26 C -0.090 4.090 27 H 0.096 0.904 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.203 0.797 33 H 0.164 0.836 34 H 0.414 0.586 35 H 0.070 0.930 36 H 0.126 0.874 37 H 0.363 0.637 38 H 0.258 0.742 39 H 0.103 0.897 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 -30.161 -19.291 36.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.032 4.032 3 N -0.113 5.113 4 C -0.134 4.134 5 C -0.204 4.204 6 C -0.280 4.280 7 C 0.370 3.630 8 O -0.483 6.483 9 N -0.349 5.349 10 C 0.024 3.976 11 H 0.093 0.907 12 C -0.176 4.176 13 C 0.045 3.955 14 H 0.096 0.904 15 N -0.378 5.378 16 C -0.361 4.361 17 H 0.083 0.917 18 C -0.253 4.253 19 N -0.631 5.631 20 Si 0.776 3.224 21 H -0.198 1.198 22 H -0.221 1.221 23 H -0.189 1.189 24 C -0.214 4.214 25 C -0.026 4.026 26 C -0.147 4.147 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.138 0.862 31 H 0.116 0.884 32 H 0.220 0.780 33 H 0.181 0.819 34 H 0.251 0.749 35 H 0.089 0.911 36 H 0.144 0.856 37 H 0.197 0.803 38 H 0.067 0.933 39 H 0.121 0.879 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.894 -30.339 -18.497 35.869 hybrid contribution 0.326 0.102 0.979 1.037 sum -4.568 -30.237 -17.518 35.243 Atomic orbital electron populations 1.22151 0.93846 1.04148 1.02373 1.22226 0.95937 0.78688 1.06301 1.44012 1.49328 1.12871 1.05060 1.22265 1.06075 0.92629 0.92443 1.22269 1.07425 0.98865 0.91793 1.20205 1.17980 0.94887 0.94886 1.17957 0.75545 0.82704 0.86832 1.90710 1.56621 1.83772 1.17196 1.45616 1.66189 1.12182 1.10926 1.22251 0.96905 0.83966 0.94518 0.90686 1.23749 0.97612 0.93605 1.02624 1.21183 0.93951 0.95091 0.85325 0.90375 1.42564 1.71942 1.11139 1.12204 1.19100 1.31228 0.88857 0.96900 0.91726 1.25426 1.02764 0.98223 0.98847 1.69862 1.54911 1.20366 1.17965 0.85507 0.79072 0.79536 0.78284 1.19839 1.22109 1.18921 1.24174 0.98378 0.97139 1.01735 1.20415 1.00851 0.90957 0.90388 1.20478 1.02815 1.02136 0.89273 0.88503 0.93406 0.92136 0.86184 0.88377 0.78038 0.81890 0.74878 0.91111 0.85595 0.80349 0.93284 0.87879 0.94413 0.90781 0.91083 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 10.24 71.98 0.74 -0.33 16 2 C 0.09 0.58 6.45 86.38 0.56 1.14 16 3 N -0.44 -6.39 2.68 -509.91 -1.37 -7.76 16 4 C -0.01 -0.10 11.33 83.12 0.94 0.84 16 5 C -0.18 -3.18 10.56 23.62 0.25 -2.93 16 6 C -0.27 -6.91 6.29 -19.04 -0.12 -7.03 16 7 C 0.58 18.75 7.81 86.62 0.68 19.42 16 8 O -0.60 -24.56 14.41 -4.12 -0.06 -24.62 16 9 N -0.70 -19.19 5.35 -443.44 -2.37 -21.56 16 10 C 0.13 4.25 4.12 45.52 0.19 4.43 16 11 H 0.07 3.04 7.46 -2.39 -0.02 3.02 16 12 C -0.14 -3.93 7.58 31.12 0.24 -3.69 16 13 C 0.15 5.87 4.56 45.52 0.21 6.08 16 14 H 0.08 2.93 8.10 -2.38 -0.02 2.91 16 15 N -0.74 -35.92 5.12 -320.45 -1.64 -37.56 16 16 C -0.23 -13.47 10.45 84.03 0.88 -12.60 16 17 H 0.06 4.07 8.06 -2.91 -0.02 4.05 16 18 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 19 N -0.98 -64.33 13.97 21.65 0.30 -64.03 16 20 Si 0.95 48.05 27.74 68.60 1.90 49.96 16 21 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.29 -15.03 7.11 99.48 0.71 -14.33 16 23 H -0.26 -12.75 6.52 99.48 0.65 -12.10 16 24 C -0.17 -6.06 7.68 31.12 0.24 -5.82 16 25 C 0.09 2.05 6.89 41.78 0.29 2.34 16 26 C -0.09 -1.89 9.52 71.24 0.68 -1.21 16 27 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.12 0.18 8.11 -2.39 -0.02 0.16 16 31 H 0.10 0.51 7.05 -2.38 -0.02 0.50 16 32 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 33 H 0.16 2.05 7.70 -2.91 -0.02 2.03 16 34 H 0.41 8.21 7.85 -92.71 -0.73 7.49 16 35 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.13 2.58 8.12 -2.39 -0.02 2.56 16 37 H 0.36 17.53 5.76 -92.71 -0.53 17.00 16 38 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 39 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.04 1.57 8.14 -2.38 -0.02 1.56 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 1.97 6.46 -2.39 -0.02 1.95 16 43 H 0.09 1.25 7.01 -2.38 -0.02 1.23 16 Total: -1.00 -81.36 354.02 2.69 -78.68 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: -0.30 Total: 29.51 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 6.22 Total: -2.61 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -5.08 Total: -130.91 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.06 Total: -24.62 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 1.90 Total: 49.96 kcal Total: -81.36 2.69 -78.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020498441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.603 kcal (2) G-P(sol) polarization free energy of solvation -81.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds