Wall clock time and date at job start Tue Mar 31 2020 06:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46833 * 2 1 4 4 C 1.36449 * 124.85153 * 265.01926 * 3 2 1 5 5 C 1.34487 * 108.85355 * 179.69571 * 4 3 2 6 6 C 1.46685 * 106.33328 * 0.43154 * 5 4 3 7 7 C 1.47263 * 126.93902 * 179.82418 * 6 5 4 8 8 O 1.21628 * 119.99984 * 179.69070 * 7 6 5 9 9 N 1.34776 * 120.00253 * 359.70064 * 7 6 5 10 10 C 1.46504 * 120.00087 * 179.97438 * 9 7 6 11 11 H 1.08997 * 112.84747 * 336.18923 * 10 9 7 12 12 C 1.53780 * 113.61330 * 107.49885 * 10 9 7 13 13 C 1.53787 * 87.07955 * 139.98064 * 12 10 9 14 14 H 1.09002 * 113.68716 * 89.12347 * 13 12 10 15 15 N 1.46493 * 113.61186 * 220.01871 * 13 12 10 16 16 C 1.36945 * 119.99892 * 252.49346 * 15 13 12 17 17 H 1.08000 * 119.99422 * 359.72792 * 16 15 13 18 18 C 1.38811 * 120.00031 * 179.72716 * 16 15 13 19 19 N 1.31614 * 119.99700 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47294 * 90.00155 * 20 18 16 22 22 H 1.48499 * 109.47218 * 210.00015 * 20 18 16 23 23 H 1.48505 * 109.47256 * 330.00020 * 20 18 16 24 24 C 1.53782 * 113.61295 * 204.99902 * 10 9 7 25 25 C 1.34660 * 124.85175 * 85.00143 * 3 2 1 26 26 C 1.50701 * 125.80164 * 0.03967 * 25 3 2 27 27 H 1.08999 * 109.47476 * 299.99713 * 1 2 3 28 28 H 1.08999 * 109.47197 * 60.00191 * 1 2 3 29 29 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46954 * 239.99745 * 2 1 3 31 31 H 1.09006 * 109.46847 * 119.99693 * 2 1 3 32 32 H 1.07996 * 125.56701 * 359.97438 * 4 3 2 33 33 H 1.07998 * 126.82826 * 180.27071 * 5 4 3 34 34 H 0.96995 * 120.00019 * 359.97438 * 9 7 6 35 35 H 1.08992 * 113.61616 * 25.43486 * 12 10 9 36 36 H 1.09002 * 113.61111 * 254.52706 * 12 10 9 37 37 H 0.97000 * 120.00738 * 72.22811 * 15 13 12 38 38 H 0.97004 * 120.00256 * 179.97438 * 19 18 16 39 39 H 1.08998 * 113.61707 * 105.46447 * 24 10 9 40 40 H 1.09006 * 113.61328 * 334.56032 * 24 10 9 41 41 H 1.09002 * 109.47163 * 269.99951 * 26 25 3 42 42 H 1.09006 * 109.46988 * 29.99951 * 26 25 3 43 43 H 1.08994 * 109.47664 * 149.99668 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3698 2.0840 -1.1155 5 6 2.7640 3.3158 -0.7469 6 6 2.6525 3.3644 0.7149 7 6 2.9744 4.5045 1.5897 8 8 2.8287 4.4077 2.7933 9 7 3.4302 5.6554 1.0565 10 6 3.7498 6.7898 1.9267 11 1 3.2181 6.7567 2.8776 12 6 5.2587 7.0495 2.0710 13 6 4.9275 8.5495 1.9987 14 1 4.7190 8.9992 2.9694 15 7 5.8858 9.3244 1.2066 16 6 6.7681 10.1655 1.8306 17 1 6.7545 10.2609 2.9063 18 6 7.6799 10.8955 1.0806 19 7 8.5275 11.7043 1.6803 20 14 7.7029 10.7311 -0.7800 21 1 6.7853 11.7345 -1.3771 22 1 9.0819 10.9619 -1.2803 23 1 7.2599 9.3661 -1.1619 24 6 3.6627 8.1525 1.2193 25 6 2.1840 2.1388 1.1009 26 6 1.9016 1.7092 2.5174 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.3328 1.7132 -2.1291 33 1 3.0987 4.1102 -1.3975 34 1 3.5466 5.7325 0.0966 35 1 5.8462 6.6908 1.2259 36 1 5.6652 6.7380 3.0332 37 1 5.8980 9.2389 0.2405 38 1 9.1650 12.2142 1.1562 39 1 2.7808 8.7314 1.4938 40 1 3.8140 8.0953 0.1413 41 1 0.8680 1.9462 2.7698 42 1 2.0609 0.6348 2.6098 43 1 2.5715 2.2355 3.1973 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022582213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:26 Heat of formation + Delta-G solvation = 40.258540 kcal Electronic energy + Delta-G solvation = -22606.696549 eV Core-core repulsion = 19267.579081 eV Total energy + Delta-G solvation = -3339.117468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.60165 -39.46784 -37.74910 -34.44207 -34.05047 -32.57509 -31.73542 -30.48656 -29.53303 -26.63489 -25.13281 -24.86340 -23.86319 -22.49740 -21.38714 -20.04281 -19.69700 -18.83779 -17.62620 -17.30466 -16.09444 -16.05526 -15.46959 -15.01937 -14.69968 -14.48581 -14.11307 -13.95658 -13.66413 -13.34423 -13.11430 -13.09989 -12.81412 -12.65029 -12.54338 -12.26744 -12.09569 -11.95327 -11.77844 -11.71624 -11.64257 -10.97900 -10.69926 -10.40636 -10.19912 -10.04629 -9.61673 -9.50518 -8.89823 -8.85555 -8.62423 -8.27371 -7.23994 -5.75815 -3.11272 1.69223 2.25836 2.51381 3.38174 3.40529 3.45856 3.59529 3.66727 4.17643 4.44282 4.50305 4.59796 4.65250 4.72477 4.98296 5.02840 5.07281 5.08644 5.22629 5.24766 5.34356 5.38886 5.47893 5.48616 5.51820 5.67937 5.73952 5.82792 5.84286 6.02425 6.18034 6.19650 6.29359 6.53052 6.61356 6.63203 6.79296 6.87857 7.02583 7.08151 7.85013 8.01250 8.43872 8.55000 9.21583 9.94041 10.13901 11.42476 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031709 B = 0.002813 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.829198 B = 9950.857689 C =10509.489542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.443 5.443 4 C -0.020 4.020 5 C -0.167 4.167 6 C -0.235 4.235 7 C 0.590 3.410 8 O -0.556 6.556 9 N -0.711 5.711 10 C 0.121 3.879 11 H 0.111 0.889 12 C -0.176 4.176 13 C 0.174 3.826 14 H 0.088 0.912 15 N -0.735 5.735 16 C -0.246 4.246 17 H 0.092 0.908 18 C 0.003 3.997 19 N -0.933 5.933 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.162 4.162 25 C 0.104 3.896 26 C -0.093 4.093 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.165 0.835 33 H 0.144 0.856 34 H 0.398 0.602 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.362 0.638 38 H 0.259 0.741 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.607 -25.631 -6.125 31.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.026 4.026 3 N -0.120 5.120 4 C -0.145 4.145 5 C -0.191 4.191 6 C -0.244 4.244 7 C 0.379 3.621 8 O -0.437 6.437 9 N -0.360 5.360 10 C 0.016 3.984 11 H 0.129 0.871 12 C -0.218 4.218 13 C 0.062 3.938 14 H 0.106 0.894 15 N -0.375 5.375 16 C -0.376 4.376 17 H 0.110 0.890 18 C -0.192 4.192 19 N -0.581 5.581 20 Si 0.716 3.284 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.202 4.202 25 C -0.012 4.012 26 C -0.150 4.150 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.232 0.768 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.195 0.805 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.666 -25.843 -5.133 31.722 hybrid contribution 0.271 -0.084 -2.135 2.153 sum -17.395 -25.927 -7.268 32.057 Atomic orbital electron populations 1.22172 0.94193 1.03055 1.03418 1.21880 0.95683 0.80549 1.04477 1.43731 1.50503 1.11887 1.05890 1.21649 1.08426 0.93260 0.91207 1.22023 1.06503 0.97172 0.93375 1.20199 1.15730 0.95072 0.93438 1.17363 0.75978 0.81844 0.86935 1.90707 1.55129 1.82854 1.14976 1.45793 1.66713 1.12951 1.10539 1.22421 0.97227 0.83898 0.94813 0.87104 1.24290 0.94701 1.00812 1.01995 1.21348 0.87979 0.89339 0.95099 0.89394 1.42712 1.39750 1.50488 1.04526 1.19159 1.09157 1.15556 0.93745 0.89036 1.24697 0.98204 0.98940 0.97391 1.69703 1.23179 1.30774 1.34419 0.86538 0.77020 0.77601 0.87287 1.21072 1.21763 1.20347 1.23880 1.00534 0.95333 1.00440 1.20292 1.00895 0.90688 0.89338 1.20560 1.03681 1.00806 0.89962 0.91673 0.91758 0.90654 0.88976 0.89203 0.81803 0.83784 0.76838 0.90403 0.91870 0.80508 0.93059 0.91210 0.90296 0.90654 0.92176 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.24 37.16 0.38 -0.35 16 2 C 0.10 0.47 6.45 -4.04 -0.03 0.45 16 3 N -0.44 -3.82 2.69 -112.52 -0.30 -4.13 16 4 C -0.02 -0.17 11.33 -16.82 -0.19 -0.36 16 5 C -0.17 -1.75 10.56 -37.50 -0.40 -2.15 16 6 C -0.23 -3.05 6.29 -103.35 -0.65 -3.70 16 7 C 0.59 9.05 7.81 -12.59 -0.10 8.95 16 8 O -0.56 -10.00 14.41 5.25 0.08 -9.93 16 9 N -0.71 -10.01 5.35 -54.14 -0.29 -10.30 16 10 C 0.12 1.87 4.24 -67.12 -0.28 1.59 16 11 H 0.11 1.79 7.46 -51.93 -0.39 1.40 16 12 C -0.18 -3.11 7.68 -25.92 -0.20 -3.31 16 13 C 0.17 3.36 4.48 -67.12 -0.30 3.06 16 14 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 15 N -0.74 -17.40 5.20 -52.63 -0.27 -17.68 16 16 C -0.25 -6.99 10.45 -15.06 -0.16 -7.14 16 17 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 18 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 19 N -0.93 -29.49 13.97 55.49 0.78 -28.72 16 20 Si 0.89 22.13 27.74 -169.99 -4.71 17.41 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.28 -6.49 6.52 56.52 0.37 -6.13 16 24 C -0.16 -2.51 7.58 -25.92 -0.20 -2.71 16 25 C 0.10 1.17 6.89 -81.89 -0.56 0.61 16 26 C -0.09 -0.90 9.52 36.01 0.34 -0.56 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.30 8.11 -51.93 -0.42 -0.12 16 31 H 0.09 0.37 7.05 -51.93 -0.37 0.00 16 32 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.14 1.26 7.70 -52.49 -0.40 0.86 16 34 H 0.40 4.77 7.85 -40.82 -0.32 4.45 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.36 8.35 5.79 -40.82 -0.24 8.12 16 38 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.42 7.02 -51.93 -0.36 0.06 16 43 H 0.10 1.24 6.47 -51.93 -0.34 0.90 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -34.74 354.16 -8.48 -43.22 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.65 Total: 10.41 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.44 Total: -5.63 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.09 Total: -60.82 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.74 -8.48 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022582213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.478 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds