Wall clock time and date at job start Tue Mar 31 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46833 * 2 1 4 4 C 1.36449 * 124.85153 * 265.01926 * 3 2 1 5 5 C 1.34487 * 108.85355 * 179.69571 * 4 3 2 6 6 C 1.46685 * 106.33328 * 0.43154 * 5 4 3 7 7 C 1.47263 * 126.93902 * 179.82418 * 6 5 4 8 8 O 1.21628 * 119.99984 * 179.69070 * 7 6 5 9 9 N 1.34776 * 120.00253 * 359.70064 * 7 6 5 10 10 C 1.46504 * 120.00087 * 179.97438 * 9 7 6 11 11 H 1.08997 * 112.84747 * 336.18923 * 10 9 7 12 12 C 1.53780 * 113.61330 * 107.49885 * 10 9 7 13 13 C 1.53787 * 87.07955 * 139.98064 * 12 10 9 14 14 H 1.09002 * 113.68716 * 89.12347 * 13 12 10 15 15 N 1.46493 * 113.61186 * 220.01871 * 13 12 10 16 16 C 1.36945 * 119.99892 * 252.49346 * 15 13 12 17 17 H 1.08000 * 119.99422 * 359.72792 * 16 15 13 18 18 C 1.38811 * 120.00031 * 179.72716 * 16 15 13 19 19 N 1.31614 * 119.99700 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47294 * 90.00155 * 20 18 16 22 22 H 1.48499 * 109.47218 * 210.00015 * 20 18 16 23 23 H 1.48505 * 109.47256 * 330.00020 * 20 18 16 24 24 C 1.53782 * 113.61295 * 204.99902 * 10 9 7 25 25 C 1.34660 * 124.85175 * 85.00143 * 3 2 1 26 26 C 1.50701 * 125.80164 * 0.03967 * 25 3 2 27 27 H 1.08999 * 109.47476 * 299.99713 * 1 2 3 28 28 H 1.08999 * 109.47197 * 60.00191 * 1 2 3 29 29 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46954 * 239.99745 * 2 1 3 31 31 H 1.09006 * 109.46847 * 119.99693 * 2 1 3 32 32 H 1.07996 * 125.56701 * 359.97438 * 4 3 2 33 33 H 1.07998 * 126.82826 * 180.27071 * 5 4 3 34 34 H 0.96995 * 120.00019 * 359.97438 * 9 7 6 35 35 H 1.08992 * 113.61616 * 25.43486 * 12 10 9 36 36 H 1.09002 * 113.61111 * 254.52706 * 12 10 9 37 37 H 0.97000 * 120.00738 * 72.22811 * 15 13 12 38 38 H 0.97004 * 120.00256 * 179.97438 * 19 18 16 39 39 H 1.08998 * 113.61707 * 105.46447 * 24 10 9 40 40 H 1.09006 * 113.61328 * 334.56032 * 24 10 9 41 41 H 1.09002 * 109.47163 * 269.99951 * 26 25 3 42 42 H 1.09006 * 109.46988 * 29.99951 * 26 25 3 43 43 H 1.08994 * 109.47664 * 149.99668 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3698 2.0840 -1.1155 5 6 2.7640 3.3158 -0.7469 6 6 2.6525 3.3644 0.7149 7 6 2.9744 4.5045 1.5897 8 8 2.8287 4.4077 2.7933 9 7 3.4302 5.6554 1.0565 10 6 3.7498 6.7898 1.9267 11 1 3.2181 6.7567 2.8776 12 6 5.2587 7.0495 2.0710 13 6 4.9275 8.5495 1.9987 14 1 4.7190 8.9992 2.9694 15 7 5.8858 9.3244 1.2066 16 6 6.7681 10.1655 1.8306 17 1 6.7545 10.2609 2.9063 18 6 7.6799 10.8955 1.0806 19 7 8.5275 11.7043 1.6803 20 14 7.7029 10.7311 -0.7800 21 1 6.7853 11.7345 -1.3771 22 1 9.0819 10.9619 -1.2803 23 1 7.2599 9.3661 -1.1619 24 6 3.6627 8.1525 1.2193 25 6 2.1840 2.1388 1.1009 26 6 1.9016 1.7092 2.5174 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.3328 1.7132 -2.1291 33 1 3.0987 4.1102 -1.3975 34 1 3.5466 5.7325 0.0966 35 1 5.8462 6.6908 1.2259 36 1 5.6652 6.7380 3.0332 37 1 5.8980 9.2389 0.2405 38 1 9.1650 12.2142 1.1562 39 1 2.7808 8.7314 1.4938 40 1 3.8140 8.0953 0.1413 41 1 0.8680 1.9462 2.7698 42 1 2.0609 0.6348 2.6098 43 1 2.5715 2.2355 3.1973 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022582213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:25 Heat of formation + Delta-G solvation = 17.089532 kcal Electronic energy + Delta-G solvation = -22607.701232 eV Core-core repulsion = 19267.579081 eV Total energy + Delta-G solvation = -3340.122152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.33114 -40.73855 -39.09905 -35.82317 -34.99789 -34.11376 -32.51513 -32.40979 -30.20858 -27.49128 -26.54353 -26.31442 -24.87695 -23.58625 -22.62505 -21.24037 -20.91445 -19.88128 -19.30790 -18.30957 -17.48609 -16.89932 -16.42873 -16.24536 -15.99803 -15.64566 -15.38401 -15.15729 -14.69565 -14.46813 -14.22528 -14.08475 -13.79142 -13.69876 -13.60044 -13.55690 -13.31339 -12.97831 -12.88484 -12.73815 -12.41184 -12.28855 -12.09916 -12.06943 -11.90278 -11.70715 -11.61989 -10.92050 -10.75502 -9.97446 -9.50304 -9.26891 -9.06789 -8.01227 -5.35006 0.77758 1.39018 1.43755 1.50737 1.54280 1.88179 2.49979 2.50527 2.60843 3.28351 3.64242 3.76481 3.83175 3.83805 3.86060 4.01893 4.09021 4.13605 4.21248 4.28085 4.36798 4.43105 4.60777 4.69316 4.75651 4.83997 4.85904 4.87118 4.90311 5.00444 5.09249 5.14150 5.15139 5.22894 5.28032 5.41744 5.71477 5.78657 5.83619 6.15122 6.23489 6.40126 6.76208 7.08530 7.42270 7.84386 8.04999 9.20349 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031709 B = 0.002813 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.829198 B = 9950.857689 C =10509.489542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.088 3.912 3 N -0.437 5.437 4 C -0.009 4.009 5 C -0.184 4.184 6 C -0.272 4.272 7 C 0.583 3.417 8 O -0.593 6.593 9 N -0.703 5.703 10 C 0.136 3.864 11 H 0.103 0.897 12 C -0.171 4.171 13 C 0.155 3.845 14 H 0.077 0.923 15 N -0.737 5.737 16 C -0.236 4.236 17 H 0.055 0.945 18 C -0.068 4.068 19 N -0.985 5.985 20 Si 0.960 3.040 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.249 1.249 24 C -0.138 4.138 25 C 0.096 3.904 26 C -0.089 4.089 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.200 0.800 33 H 0.157 0.843 34 H 0.410 0.590 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.368 0.632 38 H 0.258 0.742 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.396 -28.371 -9.213 35.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.032 4.032 3 N -0.113 5.113 4 C -0.135 4.135 5 C -0.207 4.207 6 C -0.282 4.282 7 C 0.375 3.625 8 O -0.476 6.476 9 N -0.353 5.353 10 C 0.030 3.970 11 H 0.121 0.879 12 C -0.213 4.213 13 C 0.045 3.955 14 H 0.095 0.905 15 N -0.379 5.379 16 C -0.367 4.367 17 H 0.073 0.927 18 C -0.260 4.260 19 N -0.636 5.636 20 Si 0.787 3.213 21 H -0.202 1.202 22 H -0.225 1.225 23 H -0.173 1.173 24 C -0.178 4.178 25 C -0.023 4.023 26 C -0.146 4.146 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.135 0.865 31 H 0.118 0.882 32 H 0.217 0.783 33 H 0.175 0.825 34 H 0.246 0.754 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.202 0.798 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.515 -28.647 -8.249 35.631 hybrid contribution 0.773 0.655 -1.066 1.471 sum -18.742 -27.992 -9.315 34.951 Atomic orbital electron populations 1.22144 0.93658 1.04166 1.02446 1.22231 0.96075 0.78646 1.06251 1.44018 1.49254 1.12949 1.05083 1.22218 1.06279 0.92550 0.92491 1.22251 1.07590 0.98686 0.92211 1.20220 1.18239 0.95071 0.94641 1.17822 0.75320 0.82548 0.86850 1.90683 1.56779 1.83530 1.16620 1.45648 1.66378 1.12272 1.10953 1.22096 0.95155 0.84723 0.94996 0.87862 1.24172 0.96505 0.99331 1.01315 1.21616 0.89305 0.89402 0.95201 0.90471 1.42645 1.39843 1.50380 1.04986 1.19114 1.09541 1.15568 0.92443 0.92691 1.25585 0.98129 0.99080 1.03162 1.69900 1.24563 1.32524 1.36591 0.85338 0.76690 0.79084 0.80218 1.20173 1.22487 1.17320 1.23692 0.98660 0.94636 1.00806 1.20464 1.00561 0.90763 0.90480 1.20496 1.03060 1.02137 0.88926 0.93103 0.92244 0.88518 0.86489 0.88239 0.78319 0.82517 0.75398 0.90524 0.93132 0.79774 0.93367 0.89532 0.88608 0.90333 0.89444 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 71.98 0.74 -0.20 16 2 C 0.09 0.56 6.45 86.38 0.56 1.12 16 3 N -0.44 -6.34 2.69 -509.92 -1.37 -7.71 16 4 C -0.01 -0.13 11.33 83.12 0.94 0.81 16 5 C -0.18 -3.46 10.56 23.62 0.25 -3.21 16 6 C -0.27 -6.84 6.29 -19.04 -0.12 -6.96 16 7 C 0.58 17.85 7.81 86.62 0.68 18.53 16 8 O -0.59 -21.89 14.41 -4.12 -0.06 -21.94 16 9 N -0.70 -19.02 5.35 -443.44 -2.37 -21.40 16 10 C 0.14 4.09 4.24 45.52 0.19 4.28 16 11 H 0.10 3.33 7.46 -2.39 -0.02 3.31 16 12 C -0.17 -6.03 7.68 31.12 0.24 -5.79 16 13 C 0.15 5.91 4.48 45.52 0.20 6.11 16 14 H 0.08 3.09 8.10 -2.39 -0.02 3.07 16 15 N -0.74 -34.42 5.20 -320.44 -1.67 -36.09 16 16 C -0.24 -13.63 10.45 84.03 0.88 -12.76 16 17 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 18 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 19 N -0.99 -64.10 13.97 21.65 0.30 -63.80 16 20 Si 0.96 45.46 27.74 68.60 1.90 47.37 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 23 H -0.25 -10.48 6.52 99.48 0.65 -9.83 16 24 C -0.14 -4.00 7.58 31.12 0.24 -3.77 16 25 C 0.10 2.03 6.89 41.78 0.29 2.32 16 26 C -0.09 -1.68 9.52 71.24 0.68 -1.00 16 27 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.12 0.22 8.11 -2.39 -0.02 0.20 16 31 H 0.10 0.47 7.05 -2.38 -0.02 0.45 16 32 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 33 H 0.16 2.36 7.70 -2.91 -0.02 2.33 16 34 H 0.41 9.01 7.85 -92.71 -0.73 8.28 16 35 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.37 16.15 5.79 -92.71 -0.54 15.61 16 38 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 39 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.10 2.50 8.10 -2.38 -0.02 2.48 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 1.09 7.02 -2.38 -0.02 1.07 16 43 H 0.07 1.85 6.47 -2.39 -0.02 1.83 16 Total: -1.00 -78.12 354.16 2.66 -75.46 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.30 Total: 32.24 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 6.22 Total: -4.13 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -5.11 Total: -128.99 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.06 Total: -21.94 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.37 kcal Total: -78.12 2.66 -75.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022582213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.551 kcal (2) G-P(sol) polarization free energy of solvation -78.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds