Wall clock time and date at job start Tue Mar 31 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46845 * 2 1 4 4 N 1.46497 * 109.46823 * 119.99616 * 2 1 3 5 5 C 1.35536 * 125.68375 * 327.82885 * 4 2 1 6 6 C 1.35450 * 108.87558 * 180.29799 * 5 4 2 7 7 C 1.39840 * 107.86523 * 359.73474 * 6 5 4 8 8 C 1.37659 * 125.67556 * 147.66733 * 4 2 1 9 9 C 1.46677 * 126.23256 * 359.96972 * 8 4 2 10 10 O 1.21692 * 119.99556 * 188.11806 * 9 8 4 11 11 N 1.34770 * 119.99900 * 8.11164 * 9 8 4 12 12 C 1.46501 * 119.99885 * 184.35720 * 11 9 8 13 13 H 1.09005 * 112.90492 * 293.40706 * 12 11 9 14 14 C 1.53781 * 113.61462 * 64.65594 * 12 11 9 15 15 C 1.53779 * 87.08123 * 89.11983 * 14 12 11 16 16 H 1.08999 * 113.61872 * 140.06678 * 15 14 12 17 17 N 1.46504 * 113.61228 * 270.88414 * 15 14 12 18 18 C 1.36935 * 120.00031 * 195.07849 * 17 15 14 19 19 H 1.08002 * 120.00155 * 345.24418 * 18 17 15 20 20 C 1.38816 * 119.99704 * 165.24058 * 18 17 15 21 21 N 1.31617 * 119.99772 * 167.99608 * 20 18 17 22 22 Si 1.86797 * 120.00298 * 347.99298 * 20 18 17 23 23 H 1.48502 * 109.47029 * 271.04049 * 22 20 18 24 24 H 1.48493 * 109.47160 * 151.03621 * 22 20 18 25 25 H 1.48505 * 109.47054 * 31.03491 * 22 20 18 26 26 C 1.53778 * 113.61751 * 162.15496 * 12 11 9 27 27 H 1.09003 * 109.47185 * 185.36187 * 1 2 3 28 28 H 1.08994 * 109.47581 * 305.36615 * 1 2 3 29 29 H 1.09006 * 109.46977 * 65.36609 * 1 2 3 30 30 H 1.09001 * 109.47415 * 239.99748 * 2 1 3 31 31 H 1.09008 * 109.46624 * 184.79312 * 3 2 1 32 32 H 1.08996 * 109.46962 * 304.78954 * 3 2 1 33 33 H 1.09003 * 109.47210 * 64.79639 * 3 2 1 34 34 H 1.08005 * 125.56087 * 359.97438 * 5 4 2 35 35 H 1.08001 * 126.07239 * 179.69210 * 6 5 4 36 36 H 1.07996 * 126.45995 * 180.02562 * 7 6 5 37 37 H 0.97001 * 120.00274 * 4.35856 * 11 9 8 38 38 H 1.08998 * 113.61124 * 334.56692 * 14 12 11 39 39 H 1.09000 * 113.68666 * 203.67457 * 14 12 11 40 40 H 0.97000 * 120.00016 * 15.08010 * 17 15 14 41 41 H 0.97001 * 120.00140 * 180.02562 * 21 20 18 42 42 H 1.09000 * 113.61748 * 156.33292 * 26 12 11 43 43 H 1.09008 * 113.61161 * 25.43013 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 1.4032 -0.7108 2.4038 6 6 2.1512 -1.4419 3.2644 7 6 3.2747 -1.9031 2.5712 8 6 3.1767 -1.4295 1.2800 9 6 4.1353 -1.6648 0.1951 10 8 5.0466 -2.4563 0.3495 11 7 4.0066 -1.0046 -0.9728 12 6 4.9053 -1.3088 -2.0891 13 1 5.9394 -1.0274 -1.8900 14 6 4.7498 -2.7388 -2.6330 15 6 3.6765 -2.1775 -3.5805 16 1 3.7176 -2.5984 -4.5851 17 7 2.3263 -2.1925 -3.0122 18 6 1.2388 -2.0205 -3.8265 19 1 1.3695 -1.6410 -4.8291 20 6 -0.0316 -2.3341 -3.3632 21 7 -1.0925 -1.9542 -4.0433 22 14 -0.2356 -3.2953 -1.7745 23 1 -0.2314 -4.7502 -2.0722 24 1 -1.5228 -2.9248 -1.1336 25 1 0.8856 -2.9751 -0.8548 26 6 4.3846 -0.8186 -3.4504 27 1 -0.3634 -1.0232 0.0960 28 1 -0.3634 0.5948 0.8380 29 1 -0.3633 0.4284 -0.9342 30 1 1.8934 -0.5139 -0.8899 31 1 3.1266 1.4437 -0.0859 32 1 1.6082 1.9805 -0.8439 33 1 1.7484 1.9310 0.9298 34 1 0.4714 -0.2194 2.6425 35 1 1.9213 -1.6339 4.3020 36 1 4.0692 -2.5153 2.9715 37 1 3.3190 -0.3280 -1.0743 38 1 4.3592 -3.4446 -1.9000 39 1 5.6358 -3.1102 -3.1480 40 1 2.2026 -2.3241 -2.0592 41 1 -1.9802 -2.1730 -3.7194 42 1 5.1713 -0.6637 -4.1888 43 1 3.6990 0.0257 -3.3773 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023095854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:30 Heat of formation + Delta-G solvation = 61.334897 kcal Electronic energy + Delta-G solvation = -25229.624863 eV Core-core repulsion = 21891.421335 eV Total energy + Delta-G solvation = -3338.203529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50748 -39.66655 -37.63970 -35.61797 -33.78969 -32.63929 -30.63741 -29.75995 -29.03538 -27.34332 -25.38964 -24.72956 -23.33912 -22.56782 -21.27797 -20.21822 -19.59370 -18.71743 -17.69908 -17.37954 -16.00811 -15.67953 -15.37478 -15.12362 -14.64939 -14.55949 -14.09605 -13.94081 -13.77931 -13.30802 -12.78073 -12.67419 -12.55210 -12.34075 -12.26307 -12.13686 -11.91818 -11.89619 -11.65666 -11.47517 -11.09736 -11.00965 -10.82144 -10.53614 -10.29397 -9.99380 -9.75122 -9.62789 -9.05438 -8.68309 -8.61180 -8.04599 -7.35505 -5.96644 -3.32727 1.67088 2.80994 2.90401 3.21911 3.30623 3.36192 3.38932 3.63060 4.42451 4.50805 4.72201 4.76743 4.90807 5.02026 5.04517 5.15607 5.25041 5.28337 5.36454 5.48130 5.57655 5.61207 5.64737 5.67123 5.70836 5.82885 5.94203 6.04552 6.11867 6.17061 6.26261 6.27448 6.31016 6.48348 6.52147 6.69225 6.86685 6.93847 7.14080 7.32517 7.72404 7.91799 8.25870 8.42185 9.06635 9.77216 10.00594 11.20448 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.008990 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.766592 B = 3113.863546 C = 4222.679076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 C -0.168 4.168 4 N -0.415 5.415 5 C 0.020 3.980 6 C -0.216 4.216 7 C -0.115 4.115 8 C -0.056 4.056 9 C 0.588 3.412 10 O -0.533 6.533 11 N -0.715 5.715 12 C 0.123 3.877 13 H 0.077 0.923 14 C -0.162 4.162 15 C 0.165 3.835 16 H 0.069 0.931 17 N -0.730 5.730 18 C -0.250 4.250 19 H 0.091 0.909 20 C 0.017 3.983 21 N -0.920 5.920 22 Si 0.870 3.130 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.280 1.280 26 C -0.173 4.173 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.165 0.835 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.401 0.599 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.362 0.638 41 H 0.261 0.739 42 H 0.088 0.912 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.620 6.898 9.621 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.002 4.002 3 C -0.226 4.226 4 N -0.091 5.091 5 C -0.116 4.116 6 C -0.240 4.240 7 C -0.142 4.142 8 C -0.168 4.168 9 C 0.376 3.624 10 O -0.410 6.410 11 N -0.372 5.372 12 C 0.019 3.981 13 H 0.095 0.905 14 C -0.201 4.201 15 C 0.054 3.946 16 H 0.087 0.913 17 N -0.372 5.372 18 C -0.380 4.380 19 H 0.109 0.891 20 C -0.180 4.180 21 N -0.566 5.566 22 Si 0.700 3.300 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.207 1.207 26 C -0.214 4.214 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.182 0.818 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.243 0.757 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.196 0.804 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.970 6.523 9.117 13.201 hybrid contribution -0.732 -0.384 1.166 1.429 sum 6.238 6.139 10.283 13.503 Atomic orbital electron populations 1.22152 0.91977 1.03647 1.04139 1.21983 0.97234 0.93991 0.86951 1.22303 1.01839 0.94450 1.03964 1.44480 1.17443 1.37409 1.09776 1.21898 1.00220 1.04926 0.84554 1.20785 0.97334 1.05920 0.99934 1.21214 0.99663 1.02007 0.91305 1.20533 0.91895 1.07193 0.97192 1.17080 0.83758 0.80567 0.80961 1.90788 1.33102 1.35852 1.81303 1.46340 1.37024 1.41686 1.12191 1.21799 0.92645 0.97789 0.85891 0.90550 1.23693 1.00263 0.96243 0.99928 1.21206 0.84613 0.92605 0.96208 0.91259 1.42690 1.00916 1.87295 1.06303 1.19066 0.84175 1.36239 0.98492 0.89088 1.24818 0.95466 1.00250 0.97469 1.69728 0.97455 1.49502 1.39914 0.86882 0.76680 0.82020 0.84398 1.21122 1.21592 1.20675 1.24034 1.00872 1.01921 0.94603 0.91529 0.91626 0.88962 0.86640 0.91911 0.89573 0.91247 0.81809 0.84174 0.83794 0.75701 0.91121 0.89153 0.80355 0.92884 0.89311 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.61 37.16 0.32 -2.03 16 2 C 0.10 1.49 2.79 -67.93 -0.19 1.30 16 3 C -0.17 -1.94 9.07 37.16 0.34 -1.60 16 4 N -0.42 -6.46 2.69 -105.81 -0.28 -6.74 16 5 C 0.02 0.27 10.48 -16.91 -0.18 0.09 16 6 C -0.22 -2.95 10.81 -39.98 -0.43 -3.38 16 7 C -0.12 -1.84 10.66 -39.11 -0.42 -2.26 16 8 C -0.06 -0.98 6.88 -81.97 -0.56 -1.54 16 9 C 0.59 11.08 7.40 -12.86 -0.10 10.99 16 10 O -0.53 -11.19 16.18 5.20 0.08 -11.10 16 11 N -0.71 -12.19 3.72 -54.32 -0.20 -12.39 16 12 C 0.12 1.98 4.21 -67.12 -0.28 1.70 16 13 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 14 C -0.16 -2.78 7.15 -25.92 -0.19 -2.96 16 15 C 0.16 3.09 4.54 -67.12 -0.30 2.79 16 16 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 17 N -0.73 -16.48 4.69 -52.64 -0.25 -16.72 16 18 C -0.25 -6.59 10.44 -15.06 -0.16 -6.74 16 19 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 20 C 0.02 0.47 5.50 -17.43 -0.10 0.38 16 21 N -0.92 -26.97 13.97 55.49 0.78 -26.20 16 22 Si 0.87 21.68 26.45 -169.99 -4.50 17.18 16 23 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.81 6.21 56.52 0.35 -6.46 16 26 C -0.17 -2.67 7.61 -25.92 -0.20 -2.87 16 27 H 0.07 1.13 6.41 -51.93 -0.33 0.80 16 28 H 0.06 0.73 7.38 -51.93 -0.38 0.35 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.12 2.03 4.61 -51.93 -0.24 1.79 16 31 H 0.06 0.73 7.42 -51.92 -0.39 0.34 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.16 1.72 7.29 -52.48 -0.38 1.34 16 35 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.40 6.48 3.49 -40.82 -0.14 6.34 16 38 H 0.07 1.41 7.43 -51.93 -0.39 1.02 16 39 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.36 8.36 4.28 -40.82 -0.17 8.18 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.07 1.18 8.09 -51.92 -0.42 0.76 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -31.42 340.14 -7.94 -39.37 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -6.26 Total: 17.64 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -2.44 Total: -6.16 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.04 Total: -62.05 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.50 Total: 17.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.42 -7.94 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023095854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.702 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds