Wall clock time and date at job start Tue Mar 31 2020 06:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46845 * 2 1 4 4 N 1.46497 * 109.46823 * 119.99616 * 2 1 3 5 5 C 1.35536 * 125.68375 * 327.82885 * 4 2 1 6 6 C 1.35450 * 108.87558 * 180.29799 * 5 4 2 7 7 C 1.39840 * 107.86523 * 359.73474 * 6 5 4 8 8 C 1.37659 * 125.67556 * 147.66733 * 4 2 1 9 9 C 1.46677 * 126.23256 * 359.96972 * 8 4 2 10 10 O 1.21692 * 119.99556 * 188.11806 * 9 8 4 11 11 N 1.34770 * 119.99900 * 8.11164 * 9 8 4 12 12 C 1.46501 * 119.99885 * 184.35720 * 11 9 8 13 13 H 1.09005 * 112.90492 * 293.40706 * 12 11 9 14 14 C 1.53781 * 113.61462 * 64.65594 * 12 11 9 15 15 C 1.53779 * 87.08123 * 89.11983 * 14 12 11 16 16 H 1.08999 * 113.61872 * 140.06678 * 15 14 12 17 17 N 1.46504 * 113.61228 * 270.88414 * 15 14 12 18 18 C 1.36935 * 120.00031 * 195.07849 * 17 15 14 19 19 H 1.08002 * 120.00155 * 345.24418 * 18 17 15 20 20 C 1.38816 * 119.99704 * 165.24058 * 18 17 15 21 21 N 1.31617 * 119.99772 * 167.99608 * 20 18 17 22 22 Si 1.86797 * 120.00298 * 347.99298 * 20 18 17 23 23 H 1.48502 * 109.47029 * 271.04049 * 22 20 18 24 24 H 1.48493 * 109.47160 * 151.03621 * 22 20 18 25 25 H 1.48505 * 109.47054 * 31.03491 * 22 20 18 26 26 C 1.53778 * 113.61751 * 162.15496 * 12 11 9 27 27 H 1.09003 * 109.47185 * 185.36187 * 1 2 3 28 28 H 1.08994 * 109.47581 * 305.36615 * 1 2 3 29 29 H 1.09006 * 109.46977 * 65.36609 * 1 2 3 30 30 H 1.09001 * 109.47415 * 239.99748 * 2 1 3 31 31 H 1.09008 * 109.46624 * 184.79312 * 3 2 1 32 32 H 1.08996 * 109.46962 * 304.78954 * 3 2 1 33 33 H 1.09003 * 109.47210 * 64.79639 * 3 2 1 34 34 H 1.08005 * 125.56087 * 359.97438 * 5 4 2 35 35 H 1.08001 * 126.07239 * 179.69210 * 6 5 4 36 36 H 1.07996 * 126.45995 * 180.02562 * 7 6 5 37 37 H 0.97001 * 120.00274 * 4.35856 * 11 9 8 38 38 H 1.08998 * 113.61124 * 334.56692 * 14 12 11 39 39 H 1.09000 * 113.68666 * 203.67457 * 14 12 11 40 40 H 0.97000 * 120.00016 * 15.08010 * 17 15 14 41 41 H 0.97001 * 120.00140 * 180.02562 * 21 20 18 42 42 H 1.09000 * 113.61748 * 156.33292 * 26 12 11 43 43 H 1.09008 * 113.61161 * 25.43013 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 1.4032 -0.7108 2.4038 6 6 2.1512 -1.4419 3.2644 7 6 3.2747 -1.9031 2.5712 8 6 3.1767 -1.4295 1.2800 9 6 4.1353 -1.6648 0.1951 10 8 5.0466 -2.4563 0.3495 11 7 4.0066 -1.0046 -0.9728 12 6 4.9053 -1.3088 -2.0891 13 1 5.9394 -1.0274 -1.8900 14 6 4.7498 -2.7388 -2.6330 15 6 3.6765 -2.1775 -3.5805 16 1 3.7176 -2.5984 -4.5851 17 7 2.3263 -2.1925 -3.0122 18 6 1.2388 -2.0205 -3.8265 19 1 1.3695 -1.6410 -4.8291 20 6 -0.0316 -2.3341 -3.3632 21 7 -1.0925 -1.9542 -4.0433 22 14 -0.2356 -3.2953 -1.7745 23 1 -0.2314 -4.7502 -2.0722 24 1 -1.5228 -2.9248 -1.1336 25 1 0.8856 -2.9751 -0.8548 26 6 4.3846 -0.8186 -3.4504 27 1 -0.3634 -1.0232 0.0960 28 1 -0.3634 0.5948 0.8380 29 1 -0.3633 0.4284 -0.9342 30 1 1.8934 -0.5139 -0.8899 31 1 3.1266 1.4437 -0.0859 32 1 1.6082 1.9805 -0.8439 33 1 1.7484 1.9310 0.9298 34 1 0.4714 -0.2194 2.6425 35 1 1.9213 -1.6339 4.3020 36 1 4.0692 -2.5153 2.9715 37 1 3.3190 -0.3280 -1.0743 38 1 4.3592 -3.4446 -1.9000 39 1 5.6358 -3.1102 -3.1480 40 1 2.2026 -2.3241 -2.0592 41 1 -1.9802 -2.1730 -3.7194 42 1 5.1713 -0.6637 -4.1888 43 1 3.6990 0.0257 -3.3773 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023095854.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:29 Heat of formation + Delta-G solvation = 42.043392 kcal Electronic energy + Delta-G solvation = -25230.461406 eV Core-core repulsion = 21891.421335 eV Total energy + Delta-G solvation = -3339.040071 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.68508 -41.02229 -39.09023 -36.73949 -35.61183 -34.17843 -32.54595 -30.87480 -30.22649 -28.37794 -26.79315 -26.32756 -24.86619 -23.83018 -22.67859 -21.43654 -20.83319 -20.21395 -19.57951 -18.53733 -17.44770 -16.94407 -16.67980 -16.63982 -16.25963 -15.85691 -15.76384 -15.16206 -15.05326 -14.73838 -14.54857 -14.17417 -13.68075 -13.57962 -13.44013 -13.36131 -13.12280 -13.03591 -13.01519 -12.96115 -12.69448 -12.43024 -12.23597 -12.19882 -11.92776 -11.85872 -11.38555 -11.06279 -10.99775 -10.10937 -9.74805 -9.28434 -9.19857 -8.11783 -5.43116 0.42005 1.19225 1.29412 1.32372 1.67023 1.80624 2.08809 2.31753 2.34211 3.18128 3.34962 3.45731 3.54947 3.65642 3.72208 3.80789 3.91601 4.12126 4.14830 4.28590 4.38233 4.45017 4.52378 4.57566 4.63121 4.74479 4.80197 4.84420 4.94229 4.97040 4.99424 5.07653 5.14704 5.15131 5.23676 5.27398 5.53842 5.77870 5.82288 5.94740 6.16846 6.25991 6.41011 7.02178 7.06027 7.78436 7.99686 9.08916 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.008990 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.766592 B = 3113.863546 C = 4222.679076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 C -0.160 4.160 4 N -0.418 5.418 5 C 0.027 3.973 6 C -0.216 4.216 7 C -0.124 4.124 8 C -0.095 4.095 9 C 0.582 3.418 10 O -0.568 6.568 11 N -0.712 5.712 12 C 0.120 3.880 13 H 0.096 0.904 14 C -0.154 4.154 15 C 0.142 3.858 16 H 0.068 0.932 17 N -0.734 5.734 18 C -0.227 4.227 19 H 0.069 0.931 20 C -0.029 4.029 21 N -0.960 5.960 22 Si 0.925 3.075 23 H -0.301 1.301 24 H -0.283 1.283 25 H -0.277 1.277 26 C -0.150 4.150 27 H 0.038 0.962 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.200 0.800 35 H 0.170 0.830 36 H 0.144 0.856 37 H 0.405 0.595 38 H 0.038 0.962 39 H 0.122 0.878 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.126 0.874 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.170 8.263 11.012 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.005 4.005 3 C -0.217 4.217 4 N -0.093 5.093 5 C -0.109 4.109 6 C -0.239 4.239 7 C -0.151 4.151 8 C -0.207 4.207 9 C 0.371 3.629 10 O -0.448 6.448 11 N -0.369 5.369 12 C 0.016 3.984 13 H 0.113 0.887 14 C -0.193 4.193 15 C 0.033 3.967 16 H 0.086 0.914 17 N -0.377 5.377 18 C -0.358 4.358 19 H 0.087 0.913 20 C -0.223 4.223 21 N -0.609 5.609 22 Si 0.756 3.244 23 H -0.229 1.229 24 H -0.209 1.209 25 H -0.203 1.203 26 C -0.190 4.190 27 H 0.057 0.943 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.217 0.783 35 H 0.188 0.812 36 H 0.162 0.838 37 H 0.248 0.752 38 H 0.057 0.943 39 H 0.140 0.860 40 H 0.194 0.806 41 H 0.069 0.931 42 H 0.144 0.856 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.560 7.912 10.500 15.167 hybrid contribution -0.849 -0.808 0.703 1.367 sum 6.711 7.104 11.204 14.867 Atomic orbital electron populations 1.22151 0.91731 1.02487 1.05370 1.22000 0.97362 0.95363 0.85767 1.22266 1.01568 0.92383 1.05524 1.44569 1.17009 1.37254 1.10504 1.22582 1.00845 1.03941 0.83532 1.21155 0.96198 1.05240 1.01295 1.21485 1.00553 1.01794 0.91307 1.20535 0.93134 1.09574 0.97471 1.17373 0.83706 0.80183 0.81617 1.90746 1.34593 1.37376 1.82052 1.46389 1.37080 1.41392 1.12023 1.21955 0.93546 0.96955 0.85968 0.88652 1.23698 1.00503 0.96274 0.98862 1.21541 0.83356 0.95479 0.96347 0.91377 1.42675 1.01658 1.87510 1.05819 1.19015 0.85240 1.33910 0.97642 0.91334 1.25219 0.95429 1.01746 0.99872 1.69828 0.97787 1.51532 1.41741 0.85998 0.76856 0.79600 0.81994 1.22950 1.20938 1.20321 1.23894 1.00948 0.99162 0.94980 0.94263 0.87820 0.89838 0.89768 0.92245 0.88506 0.89227 0.78321 0.81210 0.83809 0.75194 0.94307 0.86029 0.80601 0.93103 0.85601 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 8.61 71.98 0.62 -3.74 16 2 C 0.10 2.74 2.79 44.99 0.13 2.86 16 3 C -0.16 -3.33 9.07 71.98 0.65 -2.68 16 4 N -0.42 -12.28 2.69 -488.66 -1.32 -13.59 16 5 C 0.03 0.64 10.48 83.48 0.88 1.52 16 6 C -0.22 -5.31 10.81 22.01 0.24 -5.07 16 7 C -0.12 -3.85 10.66 22.57 0.24 -3.61 16 8 C -0.10 -3.29 6.88 40.35 0.28 -3.01 16 9 C 0.58 21.95 7.40 86.45 0.64 22.59 16 10 O -0.57 -24.11 16.18 -4.32 -0.07 -24.18 16 11 N -0.71 -23.87 3.72 -444.00 -1.65 -25.51 16 12 C 0.12 3.66 4.21 45.52 0.19 3.85 16 13 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 14 C -0.15 -5.11 7.15 31.12 0.22 -4.89 16 15 C 0.14 5.19 4.54 45.52 0.21 5.40 16 16 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 17 N -0.73 -33.19 4.69 -320.44 -1.50 -34.70 16 18 C -0.23 -12.11 10.44 84.03 0.88 -11.23 16 19 H 0.07 3.94 8.06 -2.91 -0.02 3.91 16 20 C -0.03 -1.61 5.50 84.86 0.47 -1.14 16 21 N -0.96 -57.26 13.97 21.65 0.30 -56.95 16 22 Si 0.92 45.88 26.45 68.60 1.81 47.70 16 23 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 24 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.28 -13.39 6.21 99.48 0.62 -12.77 16 26 C -0.15 -4.28 7.61 31.12 0.24 -4.04 16 27 H 0.04 1.27 6.41 -2.39 -0.02 1.26 16 28 H 0.10 1.95 7.38 -2.39 -0.02 1.93 16 29 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.08 2.94 4.61 -2.39 -0.01 2.92 16 31 H 0.06 1.28 7.42 -2.38 -0.02 1.26 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.20 3.23 7.29 -2.91 -0.02 3.21 16 35 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 36 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.41 12.86 3.49 -92.71 -0.32 12.53 16 38 H 0.04 1.55 7.43 -2.39 -0.02 1.53 16 39 H 0.12 3.22 8.14 -2.39 -0.02 3.21 16 40 H 0.36 16.71 4.28 -92.71 -0.40 16.32 16 41 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.07 2.02 8.09 -2.38 -0.02 2.00 16 Total: -1.00 -69.86 340.14 3.66 -66.19 By element: Atomic # 1 Polarization: 44.03 SS G_CDS: 0.21 Total: 44.24 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 5.87 Total: -3.19 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -4.17 Total: -130.76 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.07 Total: -24.18 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.81 Total: 47.70 kcal Total: -69.86 3.66 -66.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023095854.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.238 kcal (2) G-P(sol) polarization free energy of solvation -69.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds