Wall clock time and date at job start Tue Mar 31 2020 07:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35540 * 125.67537 * 2 1 4 4 C 1.35454 * 108.87020 * 180.29636 * 3 2 1 5 5 C 1.39837 * 107.86166 * 359.73539 * 4 3 2 6 6 C 1.37645 * 125.68018 * 179.83972 * 2 1 3 7 7 C 1.46677 * 126.23156 * 359.96671 * 6 2 1 8 8 O 1.21692 * 120.00225 * 4.64627 * 7 6 2 9 9 N 1.34782 * 119.99856 * 184.63560 * 7 6 2 10 10 C 1.46497 * 119.99773 * 174.73851 * 9 7 6 11 11 C 1.53001 * 109.47225 * 180.02562 * 10 9 7 12 12 H 1.09009 * 109.69639 * 298.11805 * 11 10 9 13 13 C 1.52764 * 109.51241 * 178.00403 * 11 10 9 14 14 C 1.53032 * 109.38332 * 185.70373 * 13 11 10 15 15 C 1.53042 * 109.54228 * 61.23884 * 14 13 11 16 16 C 1.53197 * 109.31066 * 298.63867 * 15 14 13 17 17 N 1.46921 * 109.58686 * 58.47233 * 11 10 9 18 18 C 1.36937 * 120.63260 * 353.42248 * 17 11 10 19 19 H 1.08003 * 119.99810 * 37.55734 * 18 17 11 20 20 C 1.38811 * 119.99918 * 217.55700 * 18 17 11 21 21 N 1.31612 * 120.00320 * 10.11716 * 20 18 17 22 22 Si 1.86803 * 119.99735 * 190.11443 * 20 18 17 23 23 H 1.48494 * 109.47027 * 270.00284 * 22 20 18 24 24 H 1.48499 * 109.47152 * 30.00071 * 22 20 18 25 25 H 1.48503 * 109.46964 * 149.99891 * 22 20 18 26 26 H 1.09000 * 109.47701 * 268.97322 * 1 2 3 27 27 H 1.08997 * 109.47055 * 28.97521 * 1 2 3 28 28 H 1.08996 * 109.46906 * 148.96953 * 1 2 3 29 29 H 1.07997 * 125.56488 * 0.02562 * 3 2 1 30 30 H 1.07994 * 126.06787 * 179.76667 * 4 3 2 31 31 H 1.08006 * 126.45628 * 179.97438 * 5 4 3 32 32 H 0.96998 * 120.00023 * 354.74175 * 9 7 6 33 33 H 1.08999 * 109.47238 * 60.00453 * 10 9 7 34 34 H 1.09001 * 109.47290 * 300.00093 * 10 9 7 35 35 H 1.08998 * 109.56120 * 65.66926 * 13 11 10 36 36 H 1.09003 * 109.38355 * 305.63403 * 13 11 10 37 37 H 1.09004 * 109.46152 * 301.21546 * 14 13 11 38 38 H 1.09000 * 109.45197 * 181.25570 * 14 13 11 39 39 H 1.08992 * 109.50311 * 178.68406 * 15 14 13 40 40 H 1.08999 * 109.49345 * 58.57954 * 15 14 13 41 41 H 1.09001 * 109.58076 * 294.84050 * 16 15 14 42 42 H 1.08999 * 109.70356 * 174.49254 * 16 15 14 43 43 H 0.96998 * 120.00213 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7094 -0.0066 5 6 3.5779 -0.6887 -0.0048 6 6 2.2678 -1.1181 0.0031 7 6 1.8124 -2.5123 0.0077 8 8 0.6250 -2.7649 -0.0763 9 7 2.7092 -3.5138 0.1048 10 6 2.2494 -4.8995 0.2255 11 6 3.4589 -5.8319 0.3195 12 1 4.0531 -5.7558 -0.5912 13 6 2.9806 -7.2720 0.4953 14 6 4.1875 -8.1828 0.7313 15 6 4.9111 -7.7529 2.0095 16 6 5.4147 -6.3152 1.8474 17 7 4.2816 -5.4561 1.4773 18 6 3.9945 -4.3297 2.2012 19 1 2.9667 -4.0505 2.3804 20 6 5.0244 -3.5470 2.7046 21 7 6.2650 -3.7680 2.3249 22 14 4.6494 -2.1798 3.9210 23 1 4.3855 -0.9188 3.1825 24 1 3.4531 -2.5440 4.7218 25 1 5.8116 -1.9897 4.8257 26 1 -0.3634 -0.0184 1.0275 27 1 -0.3633 0.8990 -0.4978 28 1 -0.3633 -0.8806 -0.5297 29 1 1.9081 2.1236 0.0004 30 1 4.4131 1.3613 -0.0118 31 1 4.4583 -1.3144 -0.0092 32 1 3.6589 -3.3171 0.0947 33 1 1.6547 -5.1626 -0.6492 34 1 1.6404 -5.0034 1.1236 35 1 2.4523 -7.5933 -0.4023 36 1 2.3093 -7.3282 1.3523 37 1 4.8701 -8.1078 -0.1152 38 1 3.8494 -9.2139 0.8347 39 1 5.7568 -8.4165 2.1895 40 1 4.2220 -7.8041 2.8524 41 1 6.1717 -6.2794 1.0639 42 1 5.8447 -5.9683 2.7870 43 1 6.9847 -3.2212 2.6770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024335688.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:24 Heat of formation + Delta-G solvation = 30.035079 kcal Electronic energy + Delta-G solvation = -24545.236395 eV Core-core repulsion = 21205.675604 eV Total energy + Delta-G solvation = -3339.560791 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.94407 -38.73890 -37.49690 -34.21454 -33.03042 -32.52498 -30.85828 -29.96076 -28.83334 -26.20578 -25.90986 -24.68078 -22.21311 -21.85973 -20.70358 -20.01580 -19.26873 -18.84855 -17.51138 -16.32704 -15.62943 -15.37347 -15.10341 -14.92253 -14.16250 -13.97172 -13.63250 -13.46213 -13.42133 -13.03775 -12.91869 -12.77975 -12.42227 -12.10178 -12.06682 -11.92166 -11.67936 -11.63671 -11.16401 -10.90230 -10.74358 -10.57464 -10.26749 -10.13470 -9.98578 -9.58622 -9.43778 -9.26090 -8.57825 -8.37028 -8.25325 -7.76793 -6.53956 -5.83441 -3.36912 1.93989 3.01950 3.12591 3.38489 3.45160 3.48938 3.93113 4.11331 4.46577 4.99832 5.20561 5.25606 5.33627 5.40269 5.42650 5.54108 5.64895 5.68911 5.71429 5.78328 5.90230 5.98394 6.07667 6.18349 6.31969 6.37055 6.41983 6.47872 6.59257 6.60505 6.72049 6.73966 6.86356 7.01087 7.09571 7.26230 7.34868 7.36218 7.53816 7.61726 7.81746 8.35503 8.46426 8.91043 9.18604 9.77101 10.39629 11.22603 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016255 B = 0.006421 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.113757 B = 4359.667780 C = 5520.783681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.417 5.417 3 C 0.000 4.000 4 C -0.209 4.209 5 C -0.131 4.131 6 C -0.043 4.043 7 C 0.580 3.420 8 O -0.579 6.579 9 N -0.677 5.677 10 C 0.139 3.861 11 C 0.160 3.840 12 H 0.032 0.968 13 C -0.127 4.127 14 C -0.107 4.107 15 C -0.144 4.144 16 C 0.177 3.823 17 N -0.587 5.587 18 C -0.255 4.255 19 H 0.063 0.937 20 C 0.020 3.980 21 N -0.895 5.895 22 Si 0.885 3.115 23 H -0.275 1.275 24 H -0.282 1.282 25 H -0.291 1.291 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.163 0.837 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.419 0.581 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.075 0.925 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.589 2.781 -5.323 8.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.090 5.090 3 C -0.135 4.135 4 C -0.233 4.233 5 C -0.157 4.157 6 C -0.156 4.156 7 C 0.367 3.633 8 O -0.463 6.463 9 N -0.327 5.327 10 C 0.015 3.985 11 C 0.053 3.947 12 H 0.050 0.950 13 C -0.167 4.167 14 C -0.144 4.144 15 C -0.184 4.184 16 C 0.051 3.949 17 N -0.311 5.311 18 C -0.385 4.385 19 H 0.080 0.920 20 C -0.180 4.180 21 N -0.537 5.537 22 Si 0.714 3.286 23 H -0.201 1.201 24 H -0.207 1.207 25 H -0.217 1.217 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.180 0.820 30 H 0.156 0.844 31 H 0.166 0.834 32 H 0.259 0.741 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.038 0.962 42 H 0.094 0.906 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.631 2.644 -5.315 8.900 hybrid contribution 0.406 0.935 0.909 1.366 sum -6.224 3.580 -4.406 8.424 Atomic orbital electron populations 1.22190 0.76726 1.04686 1.03601 1.43775 1.06466 1.05091 1.53715 1.21868 0.90818 0.91209 1.09589 1.20789 0.95758 0.95257 1.11535 1.21506 0.95030 0.95337 1.03806 1.20189 0.90307 0.87798 1.17265 1.16962 0.85616 0.83647 0.77027 1.90678 1.16624 1.85148 1.53852 1.45729 1.10852 1.05565 1.70532 1.21272 0.96527 0.80261 1.00428 1.20669 0.91090 0.91327 0.91640 0.95020 1.21867 0.97659 0.96612 1.00566 1.21351 0.97200 0.97338 0.98550 1.22195 0.99064 1.00255 0.96843 1.20690 0.88733 0.85488 0.99976 1.43976 1.32562 1.25580 1.28975 1.19026 0.91908 0.99945 1.27629 0.91963 1.25184 0.95819 0.97230 0.99784 1.69978 0.98827 1.40679 1.44243 0.86560 0.77224 0.83317 0.81513 1.20075 1.20745 1.21714 0.91136 0.90532 0.87820 0.81988 0.84444 0.83427 0.74138 0.92595 0.91756 0.93018 0.92156 0.92837 0.93748 0.93572 0.92865 0.96184 0.90637 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 10.60 59.85 0.63 1.55 16 2 N -0.42 -6.83 3.16 -120.24 -0.38 -7.21 16 3 C 0.00 0.00 11.38 -16.91 -0.19 -0.20 16 4 C -0.21 -3.36 10.81 -39.98 -0.43 -3.79 16 5 C -0.13 -2.43 10.35 -39.12 -0.41 -2.84 16 6 C -0.04 -0.82 6.89 -81.98 -0.56 -1.38 16 7 C 0.58 11.92 7.77 -12.85 -0.10 11.82 16 8 O -0.58 -12.58 14.68 5.20 0.08 -12.50 16 9 N -0.68 -13.72 3.87 -61.62 -0.24 -13.96 16 10 C 0.14 2.69 4.45 -4.04 -0.02 2.67 16 11 C 0.16 3.10 3.02 -67.82 -0.20 2.90 16 12 H 0.03 0.64 8.14 -51.92 -0.42 0.21 16 13 C -0.13 -2.13 5.35 -26.84 -0.14 -2.28 16 14 C -0.11 -1.74 5.88 -26.69 -0.16 -1.89 16 15 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 16 C 0.18 3.94 5.23 -3.71 -0.02 3.92 16 17 N -0.59 -13.33 2.93 -165.02 -0.48 -13.82 16 18 C -0.26 -6.37 6.53 -15.06 -0.10 -6.47 16 19 H 0.06 1.64 6.21 -52.48 -0.33 1.31 16 20 C 0.02 0.53 5.02 -17.43 -0.09 0.44 16 21 N -0.89 -23.94 11.53 55.49 0.64 -23.30 16 22 Si 0.88 21.27 29.57 -169.99 -5.03 16.24 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 1.53 6.29 -51.93 -0.33 1.20 16 29 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.15 2.81 7.45 -52.48 -0.39 2.42 16 32 H 0.42 8.93 6.13 -40.82 -0.25 8.68 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.34 7.50 -51.93 -0.39 0.95 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 1.90 6.60 -51.93 -0.34 1.55 16 43 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 340.61 15.07 5.13 5.13 Total: -1.00 -28.94 340.61 -8.89 -37.83 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.66 Total: 9.94 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.95 Total: 1.64 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.46 Total: -58.28 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.50 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.94 -8.89 -37.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024335688.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.861 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds