Wall clock time and date at job start Tue Mar 31 2020 07:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35540 * 125.67537 * 2 1 4 4 C 1.35454 * 108.87020 * 180.29636 * 3 2 1 5 5 C 1.39837 * 107.86166 * 359.73539 * 4 3 2 6 6 C 1.37645 * 125.68018 * 179.83972 * 2 1 3 7 7 C 1.46677 * 126.23156 * 359.96671 * 6 2 1 8 8 O 1.21692 * 120.00225 * 4.64627 * 7 6 2 9 9 N 1.34782 * 119.99856 * 184.63560 * 7 6 2 10 10 C 1.46497 * 119.99773 * 174.73851 * 9 7 6 11 11 C 1.53001 * 109.47225 * 180.02562 * 10 9 7 12 12 H 1.09009 * 109.69639 * 298.11805 * 11 10 9 13 13 C 1.52764 * 109.51241 * 178.00403 * 11 10 9 14 14 C 1.53032 * 109.38332 * 185.70373 * 13 11 10 15 15 C 1.53042 * 109.54228 * 61.23884 * 14 13 11 16 16 C 1.53197 * 109.31066 * 298.63867 * 15 14 13 17 17 N 1.46921 * 109.58686 * 58.47233 * 11 10 9 18 18 C 1.36937 * 120.63260 * 353.42248 * 17 11 10 19 19 H 1.08003 * 119.99810 * 37.55734 * 18 17 11 20 20 C 1.38811 * 119.99918 * 217.55700 * 18 17 11 21 21 N 1.31612 * 120.00320 * 10.11716 * 20 18 17 22 22 Si 1.86803 * 119.99735 * 190.11443 * 20 18 17 23 23 H 1.48494 * 109.47027 * 270.00284 * 22 20 18 24 24 H 1.48499 * 109.47152 * 30.00071 * 22 20 18 25 25 H 1.48503 * 109.46964 * 149.99891 * 22 20 18 26 26 H 1.09000 * 109.47701 * 268.97322 * 1 2 3 27 27 H 1.08997 * 109.47055 * 28.97521 * 1 2 3 28 28 H 1.08996 * 109.46906 * 148.96953 * 1 2 3 29 29 H 1.07997 * 125.56488 * 0.02562 * 3 2 1 30 30 H 1.07994 * 126.06787 * 179.76667 * 4 3 2 31 31 H 1.08006 * 126.45628 * 179.97438 * 5 4 3 32 32 H 0.96998 * 120.00023 * 354.74175 * 9 7 6 33 33 H 1.08999 * 109.47238 * 60.00453 * 10 9 7 34 34 H 1.09001 * 109.47290 * 300.00093 * 10 9 7 35 35 H 1.08998 * 109.56120 * 65.66926 * 13 11 10 36 36 H 1.09003 * 109.38355 * 305.63403 * 13 11 10 37 37 H 1.09004 * 109.46152 * 301.21546 * 14 13 11 38 38 H 1.09000 * 109.45197 * 181.25570 * 14 13 11 39 39 H 1.08992 * 109.50311 * 178.68406 * 15 14 13 40 40 H 1.08999 * 109.49345 * 58.57954 * 15 14 13 41 41 H 1.09001 * 109.58076 * 294.84050 * 16 15 14 42 42 H 1.08999 * 109.70356 * 174.49254 * 16 15 14 43 43 H 0.96998 * 120.00213 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7094 -0.0066 5 6 3.5779 -0.6887 -0.0048 6 6 2.2678 -1.1181 0.0031 7 6 1.8124 -2.5123 0.0077 8 8 0.6250 -2.7649 -0.0763 9 7 2.7092 -3.5138 0.1048 10 6 2.2494 -4.8995 0.2255 11 6 3.4589 -5.8319 0.3195 12 1 4.0531 -5.7558 -0.5912 13 6 2.9806 -7.2720 0.4953 14 6 4.1875 -8.1828 0.7313 15 6 4.9111 -7.7529 2.0095 16 6 5.4147 -6.3152 1.8474 17 7 4.2816 -5.4561 1.4773 18 6 3.9945 -4.3297 2.2012 19 1 2.9667 -4.0505 2.3804 20 6 5.0244 -3.5470 2.7046 21 7 6.2650 -3.7680 2.3249 22 14 4.6494 -2.1798 3.9210 23 1 4.3855 -0.9188 3.1825 24 1 3.4531 -2.5440 4.7218 25 1 5.8116 -1.9897 4.8257 26 1 -0.3634 -0.0184 1.0275 27 1 -0.3633 0.8990 -0.4978 28 1 -0.3633 -0.8806 -0.5297 29 1 1.9081 2.1236 0.0004 30 1 4.4131 1.3613 -0.0118 31 1 4.4583 -1.3144 -0.0092 32 1 3.6589 -3.3171 0.0947 33 1 1.6547 -5.1626 -0.6492 34 1 1.6404 -5.0034 1.1236 35 1 2.4523 -7.5933 -0.4023 36 1 2.3093 -7.3282 1.3523 37 1 4.8701 -8.1078 -0.1152 38 1 3.8494 -9.2139 0.8347 39 1 5.7568 -8.4165 2.1895 40 1 4.2220 -7.8041 2.8524 41 1 6.1717 -6.2794 1.0639 42 1 5.8447 -5.9683 2.7870 43 1 6.9847 -3.2212 2.6770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024335688.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:23 Heat of formation + Delta-G solvation = 13.818478 kcal Electronic energy + Delta-G solvation = -24545.939600 eV Core-core repulsion = 21205.675604 eV Total energy + Delta-G solvation = -3340.263995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24884 -40.31523 -39.10137 -35.77632 -34.86477 -33.77268 -32.41491 -31.74143 -30.20486 -27.59831 -27.33799 -26.38081 -23.87346 -23.34552 -22.25335 -21.31087 -20.81435 -20.34926 -18.94100 -18.07447 -17.34026 -16.94032 -16.48313 -16.30490 -15.96996 -15.62065 -15.12921 -14.92291 -14.85903 -14.53988 -14.31303 -14.10744 -14.04712 -13.63269 -13.43913 -13.23215 -13.14934 -12.85631 -12.80265 -12.76290 -12.58426 -12.37813 -12.05298 -11.78264 -11.50833 -11.18780 -11.06632 -10.86029 -10.51254 -9.90614 -9.65035 -9.11019 -8.44012 -7.82140 -5.36117 0.54154 1.41354 1.47403 1.49617 1.76221 1.87078 2.43865 2.50119 2.64390 3.34077 3.60094 3.93182 4.00213 4.02351 4.19951 4.23473 4.28553 4.39376 4.43766 4.50927 4.56529 4.58156 4.66795 4.74341 4.77198 4.87895 5.01137 5.15173 5.17561 5.23485 5.29774 5.30446 5.40135 5.47859 5.60892 5.62112 5.76275 5.83081 5.85955 6.00614 6.39352 6.49314 6.72388 7.22824 7.30140 7.88114 8.45602 9.20952 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016255 B = 0.006421 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.113757 B = 4359.667780 C = 5520.783681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.420 5.420 3 C 0.027 3.973 4 C -0.228 4.228 5 C -0.145 4.145 6 C -0.081 4.081 7 C 0.576 3.424 8 O -0.597 6.597 9 N -0.682 5.682 10 C 0.144 3.856 11 C 0.159 3.841 12 H 0.031 0.969 13 C -0.121 4.121 14 C -0.102 4.102 15 C -0.135 4.135 16 C 0.181 3.819 17 N -0.599 5.599 18 C -0.239 4.239 19 H 0.049 0.951 20 C -0.015 4.015 21 N -0.917 5.917 22 Si 0.927 3.073 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.294 1.294 26 H 0.073 0.927 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.213 0.787 30 H 0.159 0.841 31 H 0.130 0.870 32 H 0.413 0.587 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.003 0.997 42 H 0.040 0.960 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 3.280 -6.098 9.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.093 5.093 3 C -0.108 4.108 4 C -0.252 4.252 5 C -0.172 4.172 6 C -0.194 4.194 7 C 0.365 3.635 8 O -0.483 6.483 9 N -0.330 5.330 10 C 0.020 3.980 11 C 0.053 3.947 12 H 0.048 0.952 13 C -0.161 4.161 14 C -0.139 4.139 15 C -0.174 4.174 16 C 0.056 3.944 17 N -0.324 5.324 18 C -0.369 4.369 19 H 0.066 0.934 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.757 3.243 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.220 1.220 26 H 0.092 0.908 27 H 0.139 0.861 28 H 0.101 0.899 29 H 0.230 0.770 30 H 0.176 0.824 31 H 0.147 0.853 32 H 0.250 0.750 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.021 0.979 42 H 0.059 0.941 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.913 3.118 -6.096 10.464 hybrid contribution 0.761 0.828 1.117 1.585 sum -7.152 3.946 -4.980 9.567 Atomic orbital electron populations 1.22368 0.74951 1.05971 1.04104 1.44088 1.07680 1.04682 1.52887 1.22657 0.89943 0.92592 1.05657 1.21132 0.97633 0.94172 1.12260 1.21551 0.94464 0.96855 1.04301 1.20060 0.91147 0.87940 1.20256 1.17238 0.85346 0.84448 0.76465 1.90650 1.17116 1.85615 1.54892 1.45765 1.10453 1.06091 1.70717 1.21275 0.96409 0.80025 1.00303 1.20820 0.90487 0.93256 0.90137 0.95166 1.21817 0.98023 0.94439 1.01807 1.21337 0.96675 0.98739 0.97198 1.22049 0.99783 0.97574 0.98009 1.20523 0.88396 0.87943 0.97536 1.44144 1.32964 1.25266 1.30045 1.18932 0.91003 1.00137 1.26858 0.93387 1.25523 0.95875 0.98646 1.01212 1.70062 0.99138 1.41488 1.45470 0.85904 0.76308 0.81983 0.80107 1.20251 1.21608 1.22035 0.90836 0.86060 0.89883 0.76991 0.82379 0.85255 0.74952 0.90760 0.93583 0.89924 0.92781 0.92426 0.90646 0.91657 0.93566 0.97899 0.94103 0.94083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.60 10.60 127.77 1.35 2.95 16 2 N -0.42 -13.00 3.16 -534.33 -1.69 -14.69 16 3 C 0.03 0.69 11.38 83.48 0.95 1.64 16 4 C -0.23 -6.95 10.81 22.01 0.24 -6.72 16 5 C -0.14 -5.46 10.35 22.57 0.23 -5.22 16 6 C -0.08 -3.13 6.89 40.35 0.28 -2.85 16 7 C 0.58 24.19 7.77 86.45 0.67 24.86 16 8 O -0.60 -26.29 14.68 -4.32 -0.06 -26.36 16 9 N -0.68 -28.41 3.87 -467.08 -1.81 -30.21 16 10 C 0.14 5.57 4.45 86.38 0.38 5.96 16 11 C 0.16 6.11 3.02 44.83 0.14 6.25 16 12 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 13 C -0.12 -3.80 5.35 30.53 0.16 -3.64 16 14 C -0.10 -3.03 5.88 30.62 0.18 -2.85 16 15 C -0.14 -4.78 6.08 30.67 0.19 -4.59 16 16 C 0.18 8.21 5.23 86.36 0.45 8.66 16 17 N -0.60 -27.68 2.93 -676.00 -1.98 -29.66 16 18 C -0.24 -12.22 6.53 84.03 0.55 -11.67 16 19 H 0.05 2.61 6.21 -2.91 -0.02 2.59 16 20 C -0.01 -0.78 5.02 84.86 0.43 -0.35 16 21 N -0.92 -50.71 11.53 21.65 0.25 -50.46 16 22 Si 0.93 44.87 29.57 68.60 2.03 46.90 16 23 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 2.38 6.29 -2.39 -0.02 2.37 16 29 H 0.21 3.19 8.06 -2.91 -0.02 3.17 16 30 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.13 5.21 7.45 -2.91 -0.02 5.19 16 32 H 0.41 18.34 6.13 -92.71 -0.57 17.77 16 33 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.05 1.95 7.50 -2.39 -0.02 1.93 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.04 2.11 6.60 -2.39 -0.02 2.09 16 43 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -64.76 340.61 3.37 -61.39 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.43 Total: 30.66 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 6.20 Total: 12.43 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -5.23 Total: -125.02 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.06 Total: -26.36 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -64.76 3.37 -61.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024335688.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.205 kcal (2) G-P(sol) polarization free energy of solvation -64.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds