Wall clock time and date at job start Tue Mar 31 2020 07:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36451 * 124.85302 * 2 1 4 4 C 1.34480 * 108.85860 * 180.02562 * 3 2 1 5 5 C 1.46693 * 106.33271 * 0.02562 * 4 3 2 6 6 C 1.47259 * 126.94150 * 179.97438 * 5 4 3 7 7 O 1.21629 * 119.99813 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00029 * 0.02925 * 6 5 4 9 9 C 1.46498 * 119.99879 * 179.97438 * 8 6 5 10 10 C 1.53009 * 109.47158 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.58002 * 59.62039 * 10 9 8 12 12 C 1.53190 * 109.58472 * 179.89895 * 10 9 8 13 13 C 1.53044 * 109.30804 * 174.42279 * 12 10 9 14 14 C 1.53039 * 109.54010 * 298.63562 * 13 12 10 15 15 C 1.53196 * 109.31068 * 61.36745 * 14 13 12 16 16 N 1.46921 * 108.77330 * 305.36092 * 15 14 13 17 17 C 1.36942 * 120.63268 * 233.58460 * 16 15 14 18 18 H 1.07995 * 119.99651 * 148.35535 * 17 16 15 19 19 C 1.38803 * 119.99820 * 328.35461 * 17 16 15 20 20 N 1.31622 * 120.00200 * 345.34605 * 19 17 16 21 21 Si 1.86806 * 119.99934 * 165.34590 * 19 17 16 22 22 H 1.48501 * 109.46959 * 59.99946 * 21 19 17 23 23 H 1.48500 * 109.47166 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46806 * 299.99830 * 21 19 17 25 25 C 1.34655 * 124.85159 * 179.70863 * 2 1 3 26 26 H 1.08997 * 109.47299 * 90.01858 * 1 2 3 27 27 H 1.09003 * 109.46819 * 330.01565 * 1 2 3 28 28 H 1.08997 * 109.47124 * 210.01755 * 1 2 3 29 29 H 1.07999 * 125.56492 * 0.02562 * 3 2 1 30 30 H 1.08004 * 126.83512 * 180.02562 * 4 3 2 31 31 H 0.96992 * 120.00200 * 359.97438 * 8 6 5 32 32 H 1.08996 * 109.47338 * 299.99894 * 9 8 6 33 33 H 1.09001 * 109.47259 * 60.00004 * 9 8 6 34 34 H 1.09001 * 109.50316 * 294.37549 * 12 10 9 35 35 H 1.08998 * 109.49728 * 54.44760 * 12 10 9 36 36 H 1.08997 * 109.45732 * 58.66017 * 13 12 10 37 37 H 1.09006 * 109.46003 * 178.62787 * 13 12 10 38 38 H 1.08997 * 109.49865 * 181.31479 * 14 13 12 39 39 H 1.08999 * 109.50039 * 301.41488 * 14 13 12 40 40 H 1.09001 * 109.58911 * 65.14869 * 15 14 13 41 41 H 1.08999 * 109.58361 * 185.43317 * 15 14 13 42 42 H 0.97009 * 119.99840 * 180.02562 * 20 19 17 43 43 H 1.08005 * 125.80021 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7492 -0.0006 5 6 3.5462 -0.7177 -0.0016 6 6 4.7284 -1.5958 -0.0030 7 8 4.5885 -2.8040 -0.0042 8 7 5.9653 -1.0606 -0.0029 9 6 7.1414 -1.9341 -0.0037 10 6 8.4110 -1.0802 -0.0041 11 1 8.4247 -0.4457 0.8821 12 6 9.6426 -1.9912 -0.0024 13 6 10.9044 -1.1367 -0.1431 14 6 10.8647 -0.3804 -1.4730 15 6 9.6469 0.5489 -1.4912 16 7 8.4424 -0.2447 -1.2123 17 6 7.3690 -0.2060 -2.0618 18 1 6.7448 -1.0788 -2.1832 19 6 7.0835 0.9551 -2.7668 20 7 7.6472 2.0922 -2.4181 21 14 5.8992 0.9038 -4.2106 22 1 4.5708 0.4312 -3.7445 23 1 5.7648 2.2648 -4.7892 24 1 6.4202 -0.0253 -5.2453 25 6 2.2345 -1.1050 0.0056 26 1 -0.3634 -0.0003 -1.0276 27 1 -0.3633 0.8902 0.5136 28 1 -0.3633 -0.8898 0.5141 29 1 1.8828 2.1373 0.0004 30 1 4.3982 1.4017 -0.0003 31 1 6.0769 -0.0971 -0.0023 32 1 7.1269 -2.5639 0.8858 33 1 7.1265 -2.5627 -0.8941 34 1 9.6825 -2.5475 0.9341 35 1 9.5802 -2.6888 -0.8376 36 1 10.9531 -0.4229 0.6793 37 1 11.7837 -1.7804 -0.1177 38 1 11.7744 0.2099 -1.5831 39 1 10.7911 -1.0928 -2.2946 40 1 9.7627 1.3180 -0.7277 41 1 9.5595 1.0173 -2.4715 42 1 7.4474 2.9037 -2.9107 43 1 1.8767 -2.1241 0.0112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024381294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:28 Heat of formation + Delta-G solvation = 32.016442 kcal Electronic energy + Delta-G solvation = -24146.857805 eV Core-core repulsion = 20807.382932 eV Total energy + Delta-G solvation = -3339.474872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.88127 -38.68326 -37.42792 -33.93967 -32.96573 -32.61309 -30.56873 -29.83754 -28.84739 -26.86555 -25.64804 -24.52501 -22.14057 -21.82523 -20.58810 -19.75382 -19.22463 -18.81537 -17.58479 -16.33183 -15.51257 -15.23786 -15.16098 -14.97123 -14.12196 -13.95013 -13.83569 -13.50734 -13.34279 -12.96365 -12.86141 -12.71056 -12.39548 -12.33697 -12.17529 -11.90350 -11.68845 -11.54597 -11.08998 -10.85832 -10.69849 -10.46020 -10.22415 -10.07644 -9.92947 -9.46477 -9.36442 -9.09761 -8.47750 -8.33969 -8.12924 -7.85782 -6.56571 -5.76168 -3.21784 2.20936 2.78865 3.00754 3.43528 3.46054 3.52071 4.18229 4.32410 4.53163 4.69980 5.02444 5.10983 5.25319 5.25838 5.31987 5.41182 5.61065 5.68584 5.73929 5.79473 5.86362 6.05815 6.15905 6.24553 6.25171 6.37319 6.41890 6.50175 6.56904 6.66764 6.77770 6.79207 6.91995 7.08186 7.08218 7.29548 7.41819 7.44412 7.46507 7.69128 7.89636 8.48941 8.57755 9.17148 9.25383 9.86351 10.44657 11.30975 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.005689 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.547715 B = 4920.328050 C = 6018.577125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.453 5.453 3 C -0.030 4.030 4 C -0.153 4.153 5 C -0.219 4.219 6 C 0.583 3.417 7 O -0.581 6.581 8 N -0.688 5.688 9 C 0.136 3.864 10 C 0.160 3.840 11 H 0.031 0.969 12 C -0.127 4.127 13 C -0.107 4.107 14 C -0.144 4.144 15 C 0.175 3.825 16 N -0.587 5.587 17 C -0.248 4.248 18 H 0.069 0.931 19 C 0.012 3.988 20 N -0.901 5.901 21 Si 0.890 3.110 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.060 3.940 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.163 0.837 30 H 0.150 0.850 31 H 0.415 0.585 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.082 0.918 42 H 0.253 0.747 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.558 -1.656 6.257 9.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.130 5.130 3 C -0.155 4.155 4 C -0.177 4.177 5 C -0.229 4.229 6 C 0.371 3.629 7 O -0.464 6.464 8 N -0.338 5.338 9 C 0.012 3.988 10 C 0.053 3.947 11 H 0.049 0.951 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.184 4.184 15 C 0.049 3.951 16 N -0.311 5.311 17 C -0.377 4.377 18 H 0.087 0.913 19 C -0.187 4.187 20 N -0.545 5.545 21 Si 0.720 3.280 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.075 4.075 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.180 0.820 30 H 0.168 0.832 31 H 0.252 0.748 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.020 -2.270 6.181 10.377 hybrid contribution -0.545 0.632 -0.987 1.293 sum -8.565 -1.637 5.194 10.150 Atomic orbital electron populations 1.22023 0.77558 1.04162 1.03169 1.43528 1.06327 1.06026 1.57136 1.21673 0.90678 0.90971 1.12199 1.22225 0.96260 0.93608 1.05628 1.20485 0.92668 0.93525 1.16237 1.17331 0.82774 0.86722 0.76039 1.90680 1.87067 1.14897 1.53748 1.45758 1.04221 1.11593 1.72225 1.21242 0.84403 0.92677 1.00501 1.20730 0.91341 0.91647 0.90949 0.95147 1.21942 0.96058 0.98236 1.00462 1.21360 0.96495 0.98248 0.98366 1.22198 0.99848 0.99798 0.96511 1.20717 0.82701 0.90504 1.01145 1.44064 1.13802 1.51460 1.21803 1.19143 1.05331 0.95503 1.17754 0.91303 1.25015 0.98520 0.94974 1.00226 1.70014 1.46187 0.98031 1.40250 0.86539 0.81734 0.76393 0.83318 1.20440 1.21831 1.21252 1.21673 0.89972 0.91391 1.04444 0.91051 0.89930 0.89941 0.81970 0.83206 0.74772 0.92876 0.91776 0.93074 0.92108 0.92905 0.93795 0.93610 0.92849 0.96412 0.90016 0.93726 0.81250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 11.04 59.85 0.66 1.24 16 2 N -0.45 -5.96 3.09 -124.53 -0.38 -6.34 16 3 C -0.03 -0.42 11.34 -16.82 -0.19 -0.61 16 4 C -0.15 -2.66 10.56 -37.50 -0.40 -3.05 16 5 C -0.22 -4.14 6.29 -103.35 -0.65 -4.79 16 6 C 0.58 12.47 7.81 -12.59 -0.10 12.38 16 7 O -0.58 -13.66 16.91 5.25 0.09 -13.57 16 8 N -0.69 -14.44 3.87 -61.43 -0.24 -14.68 16 9 C 0.14 2.75 4.43 -4.04 -0.02 2.73 16 10 C 0.16 3.22 3.00 -67.60 -0.20 3.02 16 11 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 12 C -0.13 -2.22 5.37 -26.61 -0.14 -2.36 16 13 C -0.11 -1.80 5.88 -26.69 -0.16 -1.96 16 14 C -0.14 -2.73 6.08 -26.61 -0.16 -2.89 16 15 C 0.17 4.01 5.26 -3.71 -0.02 3.99 16 16 N -0.59 -13.77 2.97 -164.77 -0.49 -14.26 16 17 C -0.25 -6.37 6.98 -15.06 -0.11 -6.47 16 18 H 0.07 1.85 5.90 -52.49 -0.31 1.55 16 19 C 0.01 0.31 4.95 -17.43 -0.09 0.22 16 20 N -0.90 -24.67 11.32 55.49 0.63 -24.04 16 21 Si 0.89 21.78 29.58 -169.99 -5.03 16.76 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 C 0.06 0.94 11.12 -16.84 -0.19 0.75 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.08 0.52 8.13 -51.93 -0.42 0.09 16 29 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.15 2.66 7.70 -52.48 -0.40 2.26 16 31 H 0.41 9.00 6.57 -40.82 -0.27 8.73 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.41 7.38 -51.93 -0.38 1.03 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 2.11 6.27 -51.93 -0.33 1.78 16 42 H 0.25 6.83 8.31 -40.82 -0.34 6.50 16 43 H 0.17 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -31.14 345.08 -8.72 -39.86 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.74 Total: 8.88 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.76 Total: 2.20 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.48 Total: -59.32 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.14 -8.72 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024381294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.874 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds