Wall clock time and date at job start Tue Mar 31 2020 07:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36451 * 124.85302 * 2 1 4 4 C 1.34480 * 108.85860 * 180.02562 * 3 2 1 5 5 C 1.46693 * 106.33271 * 0.02562 * 4 3 2 6 6 C 1.47259 * 126.94150 * 179.97438 * 5 4 3 7 7 O 1.21629 * 119.99813 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00029 * 0.02925 * 6 5 4 9 9 C 1.46498 * 119.99879 * 179.97438 * 8 6 5 10 10 C 1.53009 * 109.47158 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.58002 * 59.62039 * 10 9 8 12 12 C 1.53190 * 109.58472 * 179.89895 * 10 9 8 13 13 C 1.53044 * 109.30804 * 174.42279 * 12 10 9 14 14 C 1.53039 * 109.54010 * 298.63562 * 13 12 10 15 15 C 1.53196 * 109.31068 * 61.36745 * 14 13 12 16 16 N 1.46921 * 108.77330 * 305.36092 * 15 14 13 17 17 C 1.36942 * 120.63268 * 233.58460 * 16 15 14 18 18 H 1.07995 * 119.99651 * 148.35535 * 17 16 15 19 19 C 1.38803 * 119.99820 * 328.35461 * 17 16 15 20 20 N 1.31622 * 120.00200 * 345.34605 * 19 17 16 21 21 Si 1.86806 * 119.99934 * 165.34590 * 19 17 16 22 22 H 1.48501 * 109.46959 * 59.99946 * 21 19 17 23 23 H 1.48500 * 109.47166 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46806 * 299.99830 * 21 19 17 25 25 C 1.34655 * 124.85159 * 179.70863 * 2 1 3 26 26 H 1.08997 * 109.47299 * 90.01858 * 1 2 3 27 27 H 1.09003 * 109.46819 * 330.01565 * 1 2 3 28 28 H 1.08997 * 109.47124 * 210.01755 * 1 2 3 29 29 H 1.07999 * 125.56492 * 0.02562 * 3 2 1 30 30 H 1.08004 * 126.83512 * 180.02562 * 4 3 2 31 31 H 0.96992 * 120.00200 * 359.97438 * 8 6 5 32 32 H 1.08996 * 109.47338 * 299.99894 * 9 8 6 33 33 H 1.09001 * 109.47259 * 60.00004 * 9 8 6 34 34 H 1.09001 * 109.50316 * 294.37549 * 12 10 9 35 35 H 1.08998 * 109.49728 * 54.44760 * 12 10 9 36 36 H 1.08997 * 109.45732 * 58.66017 * 13 12 10 37 37 H 1.09006 * 109.46003 * 178.62787 * 13 12 10 38 38 H 1.08997 * 109.49865 * 181.31479 * 14 13 12 39 39 H 1.08999 * 109.50039 * 301.41488 * 14 13 12 40 40 H 1.09001 * 109.58911 * 65.14869 * 15 14 13 41 41 H 1.08999 * 109.58361 * 185.43317 * 15 14 13 42 42 H 0.97009 * 119.99840 * 180.02562 * 20 19 17 43 43 H 1.08005 * 125.80021 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7492 -0.0006 5 6 3.5462 -0.7177 -0.0016 6 6 4.7284 -1.5958 -0.0030 7 8 4.5885 -2.8040 -0.0042 8 7 5.9653 -1.0606 -0.0029 9 6 7.1414 -1.9341 -0.0037 10 6 8.4110 -1.0802 -0.0041 11 1 8.4247 -0.4457 0.8821 12 6 9.6426 -1.9912 -0.0024 13 6 10.9044 -1.1367 -0.1431 14 6 10.8647 -0.3804 -1.4730 15 6 9.6469 0.5489 -1.4912 16 7 8.4424 -0.2447 -1.2123 17 6 7.3690 -0.2060 -2.0618 18 1 6.7448 -1.0788 -2.1832 19 6 7.0835 0.9551 -2.7668 20 7 7.6472 2.0922 -2.4181 21 14 5.8992 0.9038 -4.2106 22 1 4.5708 0.4312 -3.7445 23 1 5.7648 2.2648 -4.7892 24 1 6.4202 -0.0253 -5.2453 25 6 2.2345 -1.1050 0.0056 26 1 -0.3634 -0.0003 -1.0276 27 1 -0.3633 0.8902 0.5136 28 1 -0.3633 -0.8898 0.5141 29 1 1.8828 2.1373 0.0004 30 1 4.3982 1.4017 -0.0003 31 1 6.0769 -0.0971 -0.0023 32 1 7.1269 -2.5639 0.8858 33 1 7.1265 -2.5627 -0.8941 34 1 9.6825 -2.5475 0.9341 35 1 9.5802 -2.6888 -0.8376 36 1 10.9531 -0.4229 0.6793 37 1 11.7837 -1.7804 -0.1177 38 1 11.7744 0.2099 -1.5831 39 1 10.7911 -1.0928 -2.2946 40 1 9.7627 1.3180 -0.7277 41 1 9.5595 1.0173 -2.4715 42 1 7.4474 2.9037 -2.9107 43 1 1.8767 -2.1241 0.0112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024381294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:27 Heat of formation + Delta-G solvation = 13.662761 kcal Electronic energy + Delta-G solvation = -24147.653680 eV Core-core repulsion = 20807.382932 eV Total energy + Delta-G solvation = -3340.270748 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.07069 -40.32426 -39.09296 -35.59181 -34.85512 -33.69769 -32.19598 -31.64528 -30.08604 -28.11537 -27.23053 -26.12526 -23.83765 -23.27803 -22.18351 -20.99300 -20.77475 -20.34486 -18.94343 -18.09741 -17.30238 -16.77644 -16.40094 -16.26677 -15.97347 -15.62484 -15.15485 -14.98630 -14.82639 -14.57133 -14.28978 -14.03693 -13.90913 -13.55191 -13.43088 -13.24306 -13.02656 -12.94095 -12.80139 -12.75582 -12.53708 -12.29955 -12.02494 -11.78085 -11.51345 -11.14091 -11.06676 -10.76331 -10.48314 -9.85494 -9.43521 -9.22224 -8.51131 -7.80118 -5.26091 0.85867 1.43188 1.44269 1.50707 1.54600 1.99412 2.51785 2.64429 2.77423 3.35635 3.61651 4.00837 4.04012 4.07912 4.10787 4.23901 4.28893 4.39305 4.45806 4.48262 4.57757 4.64394 4.67782 4.74259 4.80113 4.89402 5.01820 5.06435 5.15632 5.20286 5.23671 5.30333 5.41385 5.48414 5.64697 5.72775 5.79040 5.80953 5.86020 6.10325 6.40591 6.48188 6.88806 7.24149 7.50430 7.91909 8.45375 9.24343 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.005689 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.547715 B = 4920.328050 C = 6018.577125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.443 5.443 3 C -0.010 4.010 4 C -0.188 4.188 5 C -0.266 4.266 6 C 0.577 3.423 7 O -0.611 6.611 8 N -0.691 5.691 9 C 0.140 3.860 10 C 0.160 3.840 11 H 0.031 0.969 12 C -0.122 4.122 13 C -0.102 4.102 14 C -0.135 4.135 15 C 0.180 3.820 16 N -0.600 5.600 17 C -0.234 4.234 18 H 0.054 0.946 19 C -0.026 4.026 20 N -0.922 5.922 21 Si 0.936 3.064 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.069 3.931 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.200 0.800 30 H 0.133 0.867 31 H 0.409 0.591 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.001 0.999 41 H 0.047 0.953 42 H 0.248 0.752 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.592 -1.978 7.148 11.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.118 5.118 3 C -0.137 4.137 4 C -0.212 4.212 5 C -0.276 4.276 6 C 0.367 3.633 7 O -0.497 6.497 8 N -0.339 5.339 9 C 0.016 3.984 10 C 0.054 3.946 11 H 0.048 0.952 12 C -0.161 4.161 13 C -0.139 4.139 14 C -0.175 4.175 15 C 0.054 3.946 16 N -0.325 5.325 17 C -0.364 4.364 18 H 0.072 0.928 19 C -0.223 4.223 20 N -0.568 5.568 21 Si 0.766 3.234 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.218 1.218 25 C -0.068 4.068 26 H 0.102 0.898 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.217 0.783 30 H 0.150 0.850 31 H 0.246 0.754 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.019 0.981 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -9.064 -2.593 7.081 11.791 hybrid contribution -0.316 0.725 -1.225 1.458 sum -9.380 -1.868 5.856 11.214 Atomic orbital electron populations 1.22458 0.73881 1.06569 1.04760 1.43889 1.08422 1.04788 1.54669 1.22141 0.89672 0.92682 1.09201 1.22184 0.97535 0.92936 1.08541 1.20506 0.93050 0.94112 1.19905 1.17792 0.83512 0.86770 0.75194 1.90633 1.87513 1.16083 1.55448 1.45802 1.04649 1.11242 1.72244 1.21237 0.84465 0.92548 1.00157 1.20880 0.92766 0.91582 0.89357 0.95177 1.21892 0.94696 0.97687 1.01824 1.21344 0.97291 0.98441 0.96862 1.22055 0.98420 0.99137 0.97839 1.20555 0.84382 0.91038 0.98605 1.44240 1.13532 1.51878 1.22817 1.19069 1.05229 0.94592 1.17547 0.92789 1.25406 0.99957 0.94984 1.01963 1.70108 1.47489 0.98146 1.41037 0.85830 0.80153 0.75982 0.81418 1.21158 1.21678 1.21786 1.21890 0.89314 0.92820 1.02797 0.89780 0.87291 0.87985 0.78310 0.84956 0.75418 0.91154 0.93999 0.89983 0.92838 0.92391 0.90612 0.91582 0.93633 0.98051 0.93427 0.94268 0.79697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 11.04 127.77 1.41 2.15 16 2 N -0.44 -10.48 3.09 -547.89 -1.69 -12.17 16 3 C -0.01 -0.27 11.34 83.11 0.94 0.68 16 4 C -0.19 -6.62 10.56 23.62 0.25 -6.37 16 5 C -0.27 -10.21 6.29 -19.04 -0.12 -10.33 16 6 C 0.58 25.53 7.81 86.61 0.68 26.21 16 7 O -0.61 -29.50 16.91 -4.12 -0.07 -29.57 16 8 N -0.69 -30.11 3.87 -466.52 -1.81 -31.92 16 9 C 0.14 5.76 4.43 86.38 0.38 6.14 16 10 C 0.16 6.42 3.00 44.98 0.14 6.55 16 11 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 12 C -0.12 -3.99 5.37 30.67 0.16 -3.82 16 13 C -0.10 -3.14 5.88 30.62 0.18 -2.96 16 14 C -0.14 -4.95 6.08 30.67 0.19 -4.77 16 15 C 0.18 8.36 5.26 86.36 0.45 8.81 16 16 N -0.60 -28.66 2.97 -675.22 -2.00 -30.67 16 17 C -0.23 -12.39 6.98 84.03 0.59 -11.80 16 18 H 0.05 3.02 5.90 -2.91 -0.02 3.01 16 19 C -0.03 -1.44 4.95 84.86 0.42 -1.02 16 20 N -0.92 -52.05 11.32 21.65 0.25 -51.81 16 21 Si 0.94 46.00 29.58 68.60 2.03 48.03 16 22 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 25 C 0.07 2.10 11.12 83.92 0.93 3.03 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.11 0.77 8.13 -2.39 -0.02 0.75 16 28 H 0.10 0.85 8.13 -2.39 -0.02 0.83 16 29 H 0.20 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.13 4.98 7.70 -2.91 -0.02 4.96 16 31 H 0.41 18.66 6.57 -92.71 -0.61 18.06 16 32 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.04 1.90 7.38 -2.39 -0.02 1.88 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.05 2.53 6.27 -2.39 -0.01 2.51 16 42 H 0.25 13.80 8.31 -92.70 -0.77 13.03 16 43 H 0.19 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -70.11 345.08 3.69 -66.41 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.39 Total: 29.19 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 6.60 Total: 12.50 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -5.26 Total: -126.56 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.07 Total: -29.57 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -70.11 3.69 -66.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024381294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.076 kcal (2) G-P(sol) polarization free energy of solvation -70.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds