Wall clock time and date at job start Tue Mar 31 2020 07:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36450 * 124.85514 * 2 1 4 4 C 1.34478 * 108.85848 * 179.72841 * 3 2 1 5 5 C 1.46680 * 106.33560 * 0.37557 * 4 3 2 6 6 C 1.47265 * 126.95047 * 179.88949 * 5 4 3 7 7 O 1.21621 * 120.00643 * 179.68412 * 6 5 4 8 8 N 1.34782 * 119.99330 * 359.68974 * 6 5 4 9 9 C 1.46498 * 119.99890 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47235 * 179.97438 * 9 8 6 11 11 H 1.09006 * 109.70234 * 299.85786 * 10 9 8 12 12 C 1.52763 * 109.51049 * 179.74346 * 10 9 8 13 13 C 1.53044 * 109.38074 * 185.70371 * 12 10 9 14 14 C 1.53040 * 109.53986 * 61.24185 * 13 12 10 15 15 C 1.53197 * 109.31190 * 298.63178 * 14 13 12 16 16 N 1.46926 * 109.58749 * 60.21381 * 10 9 8 17 17 C 1.36931 * 120.63269 * 353.42042 * 16 10 9 18 18 H 1.08008 * 119.99776 * 30.83069 * 17 16 10 19 19 C 1.38808 * 120.00382 * 210.83713 * 17 16 10 20 20 N 1.31622 * 119.99728 * 13.95222 * 19 17 16 21 21 Si 1.86799 * 120.00152 * 193.95049 * 19 17 16 22 22 H 1.48506 * 109.47106 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47282 * 299.99836 * 21 19 17 24 24 H 1.48505 * 109.46875 * 60.00167 * 21 19 17 25 25 C 1.34656 * 124.85015 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47117 * 270.02480 * 1 2 3 27 27 H 1.08999 * 109.47103 * 30.02461 * 1 2 3 28 28 H 1.09001 * 109.47085 * 150.02385 * 1 2 3 29 29 H 1.07994 * 125.56865 * 359.93904 * 3 2 1 30 30 H 1.08001 * 126.83572 * 180.25282 * 4 3 2 31 31 H 0.97001 * 120.00331 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47588 * 59.99533 * 9 8 6 33 33 H 1.08997 * 109.46833 * 299.99815 * 9 8 6 34 34 H 1.08997 * 109.56538 * 65.67469 * 12 10 9 35 35 H 1.08997 * 109.38441 * 305.63131 * 12 10 9 36 36 H 1.08996 * 109.46301 * 301.22037 * 13 12 10 37 37 H 1.09001 * 109.44559 * 181.25213 * 13 12 10 38 38 H 1.08996 * 109.50276 * 178.67975 * 14 13 12 39 39 H 1.08997 * 109.50063 * 58.57845 * 14 13 12 40 40 H 1.08997 * 109.58818 * 294.85000 * 15 14 13 41 41 H 1.08998 * 109.70311 * 174.48987 * 15 14 13 42 42 H 0.97005 * 119.99575 * 180.02562 * 20 19 17 43 43 H 1.07998 * 125.80483 * 0.04617 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7491 0.0060 5 6 3.5462 -0.7176 0.0008 6 6 4.7283 -1.5959 0.0021 7 8 4.5884 -2.8040 0.0031 8 7 5.9653 -1.0607 0.0024 9 6 7.1413 -1.9343 0.0031 10 6 8.4109 -1.0804 0.0026 11 1 8.4308 -0.4520 -0.8878 12 6 9.6378 -1.9905 0.0098 13 6 10.9012 -1.1387 0.1528 14 6 10.8563 -0.3750 1.4783 15 6 9.6410 0.5577 1.4848 16 7 8.4357 -0.2341 1.2034 17 6 7.3583 -0.1884 2.0472 18 1 6.7259 -1.0563 2.1631 19 6 7.0787 0.9733 2.7537 20 7 7.6643 2.1037 2.4196 21 14 5.8713 0.9323 4.1784 22 1 5.7486 2.2921 4.7626 23 1 4.5435 0.4815 3.6893 24 1 6.3623 -0.0094 5.2164 25 6 2.2344 -1.1051 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.8829 2.1372 -0.0009 30 1 4.3981 1.4016 0.0114 31 1 6.0769 -0.0971 0.0013 32 1 7.1270 -2.5638 -0.8866 33 1 7.1263 -2.5630 0.8933 34 1 9.6814 -2.5519 -0.9234 35 1 9.5693 -2.6834 0.8484 36 1 10.9564 -0.4295 -0.6731 37 1 11.7786 -1.7851 0.1357 38 1 11.7670 0.2133 1.5903 39 1 10.7760 -1.0827 2.3034 40 1 9.7632 1.3224 0.7177 41 1 9.5469 1.0319 2.4617 42 1 7.4691 2.9154 2.9135 43 1 1.8767 -2.1241 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024381295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:32 Heat of formation + Delta-G solvation = 32.729138 kcal Electronic energy + Delta-G solvation = -24156.943680 eV Core-core repulsion = 20817.499712 eV Total energy + Delta-G solvation = -3339.443968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.88222 -38.69757 -37.44021 -33.94402 -32.97618 -32.61466 -30.57476 -29.83626 -28.84771 -26.86622 -25.65331 -24.52601 -22.14343 -21.82081 -20.59492 -19.75440 -19.21767 -18.81732 -17.58776 -16.33534 -15.52309 -15.23591 -15.16584 -14.97298 -14.11777 -13.94948 -13.83464 -13.50611 -13.34047 -12.96762 -12.86123 -12.71062 -12.39674 -12.33504 -12.17424 -11.91091 -11.69064 -11.55134 -11.09340 -10.85181 -10.69905 -10.45629 -10.22083 -10.07035 -9.92456 -9.46100 -9.37128 -9.10107 -8.47946 -8.33953 -8.12750 -7.85618 -6.57269 -5.75882 -3.21207 2.20858 2.78806 3.00868 3.43559 3.46053 3.52109 4.18051 4.32273 4.53089 4.69981 5.02437 5.10992 5.25312 5.25875 5.31824 5.41487 5.60600 5.68548 5.74264 5.79587 5.86380 6.05696 6.15451 6.24622 6.25673 6.37444 6.42029 6.50104 6.56916 6.66789 6.77912 6.79444 6.92298 7.08110 7.08226 7.29540 7.42307 7.44810 7.46506 7.71057 7.89268 8.48749 8.57703 9.17008 9.25524 9.86567 10.44333 11.31303 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016465 B = 0.005701 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.148023 B = 4910.104391 C = 6012.423244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.453 5.453 3 C -0.030 4.030 4 C -0.153 4.153 5 C -0.219 4.219 6 C 0.583 3.417 7 O -0.581 6.581 8 N -0.689 5.689 9 C 0.136 3.864 10 C 0.161 3.839 11 H 0.031 0.969 12 C -0.128 4.128 13 C -0.107 4.107 14 C -0.144 4.144 15 C 0.174 3.826 16 N -0.588 5.588 17 C -0.247 4.247 18 H 0.070 0.930 19 C 0.011 3.989 20 N -0.902 5.902 21 Si 0.891 3.109 22 H -0.292 1.292 23 H -0.278 1.278 24 H -0.286 1.286 25 C 0.060 3.940 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.163 0.837 30 H 0.150 0.850 31 H 0.415 0.585 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.017 0.983 41 H 0.084 0.916 42 H 0.253 0.747 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 -1.702 -6.217 9.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.130 5.130 3 C -0.155 4.155 4 C -0.177 4.177 5 C -0.229 4.229 6 C 0.371 3.629 7 O -0.464 6.464 8 N -0.338 5.338 9 C 0.012 3.988 10 C 0.054 3.946 11 H 0.048 0.952 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.184 4.184 15 C 0.048 3.952 16 N -0.312 5.312 17 C -0.377 4.377 18 H 0.088 0.912 19 C -0.188 4.188 20 N -0.546 5.546 21 Si 0.721 3.279 22 H -0.218 1.218 23 H -0.204 1.204 24 H -0.213 1.213 25 C -0.075 4.075 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.180 0.820 30 H 0.168 0.832 31 H 0.253 0.747 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.056 -2.314 -6.144 10.393 hybrid contribution -0.550 0.625 0.978 1.284 sum -8.607 -1.689 -5.166 10.179 Atomic orbital electron populations 1.22022 0.77561 1.04168 1.03165 1.43525 1.06326 1.06025 1.57134 1.21671 0.90678 0.90973 1.12213 1.22222 0.96268 0.93611 1.05602 1.20486 0.92665 0.93528 1.16254 1.17335 0.82780 0.86721 0.76048 1.90678 1.87066 1.14899 1.53750 1.45783 1.04210 1.11621 1.72213 1.21245 0.84412 0.92671 1.00503 1.20640 0.91382 0.91572 0.91053 0.95161 1.21872 0.96086 0.98267 1.00506 1.21360 0.96476 0.98231 0.98404 1.22198 0.99876 0.99775 0.96514 1.20751 0.82634 0.90505 1.01294 1.44066 1.13573 1.50953 1.22587 1.19173 1.04783 0.95733 1.17985 0.91219 1.25005 0.98554 0.94973 1.00300 1.70007 1.45681 0.98350 1.40552 0.86530 0.81876 0.76387 0.83146 1.21834 1.20402 1.21278 1.21673 0.89973 0.91392 1.04437 0.91059 0.89921 0.89941 0.81969 0.83198 0.74722 0.92869 0.91790 0.93039 0.92126 0.92903 0.93794 0.93609 0.92868 0.96439 0.89767 0.93729 0.81249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 11.03 59.84 0.66 1.24 16 2 N -0.45 -5.96 3.09 -124.54 -0.38 -6.35 16 3 C -0.03 -0.42 11.34 -16.83 -0.19 -0.61 16 4 C -0.15 -2.66 10.56 -37.50 -0.40 -3.05 16 5 C -0.22 -4.14 6.29 -103.35 -0.65 -4.79 16 6 C 0.58 12.46 7.81 -12.59 -0.10 12.36 16 7 O -0.58 -13.65 16.91 5.26 0.09 -13.56 16 8 N -0.69 -14.44 3.83 -61.44 -0.24 -14.67 16 9 C 0.14 2.75 4.42 -4.04 -0.02 2.73 16 10 C 0.16 3.23 2.99 -67.82 -0.20 3.02 16 11 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 12 C -0.13 -2.22 5.35 -26.83 -0.14 -2.37 16 13 C -0.11 -1.80 5.89 -26.69 -0.16 -1.96 16 14 C -0.14 -2.74 6.08 -26.61 -0.16 -2.90 16 15 C 0.17 3.99 5.27 -3.70 -0.02 3.97 16 16 N -0.59 -13.78 2.98 -165.02 -0.49 -14.27 16 17 C -0.25 -6.35 6.98 -15.06 -0.11 -6.45 16 18 H 0.07 1.87 5.85 -52.48 -0.31 1.57 16 19 C 0.01 0.28 4.97 -17.43 -0.09 0.19 16 20 N -0.90 -24.69 11.23 55.49 0.62 -24.07 16 21 Si 0.89 21.77 29.58 -169.99 -5.03 16.75 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 C 0.06 0.94 11.12 -16.84 -0.19 0.76 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.08 0.52 8.13 -51.93 -0.42 0.09 16 29 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.15 2.67 7.70 -52.49 -0.40 2.26 16 31 H 0.41 9.00 6.52 -40.82 -0.27 8.74 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.41 7.42 -51.93 -0.39 1.02 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 2.18 6.19 -51.93 -0.32 1.86 16 42 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.17 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -31.12 344.80 -8.72 -39.85 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.74 Total: 9.00 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.76 Total: 2.13 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.49 Total: -59.36 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.12 -8.72 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024381295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.576 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds