Wall clock time and date at job start Tue Mar 31 2020 07:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36450 * 124.85514 * 2 1 4 4 C 1.34478 * 108.85848 * 179.72841 * 3 2 1 5 5 C 1.46680 * 106.33560 * 0.37557 * 4 3 2 6 6 C 1.47265 * 126.95047 * 179.88949 * 5 4 3 7 7 O 1.21621 * 120.00643 * 179.68412 * 6 5 4 8 8 N 1.34782 * 119.99330 * 359.68974 * 6 5 4 9 9 C 1.46498 * 119.99890 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47235 * 179.97438 * 9 8 6 11 11 H 1.09006 * 109.70234 * 299.85786 * 10 9 8 12 12 C 1.52763 * 109.51049 * 179.74346 * 10 9 8 13 13 C 1.53044 * 109.38074 * 185.70371 * 12 10 9 14 14 C 1.53040 * 109.53986 * 61.24185 * 13 12 10 15 15 C 1.53197 * 109.31190 * 298.63178 * 14 13 12 16 16 N 1.46926 * 109.58749 * 60.21381 * 10 9 8 17 17 C 1.36931 * 120.63269 * 353.42042 * 16 10 9 18 18 H 1.08008 * 119.99776 * 30.83069 * 17 16 10 19 19 C 1.38808 * 120.00382 * 210.83713 * 17 16 10 20 20 N 1.31622 * 119.99728 * 13.95222 * 19 17 16 21 21 Si 1.86799 * 120.00152 * 193.95049 * 19 17 16 22 22 H 1.48506 * 109.47106 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47282 * 299.99836 * 21 19 17 24 24 H 1.48505 * 109.46875 * 60.00167 * 21 19 17 25 25 C 1.34656 * 124.85015 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47117 * 270.02480 * 1 2 3 27 27 H 1.08999 * 109.47103 * 30.02461 * 1 2 3 28 28 H 1.09001 * 109.47085 * 150.02385 * 1 2 3 29 29 H 1.07994 * 125.56865 * 359.93904 * 3 2 1 30 30 H 1.08001 * 126.83572 * 180.25282 * 4 3 2 31 31 H 0.97001 * 120.00331 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47588 * 59.99533 * 9 8 6 33 33 H 1.08997 * 109.46833 * 299.99815 * 9 8 6 34 34 H 1.08997 * 109.56538 * 65.67469 * 12 10 9 35 35 H 1.08997 * 109.38441 * 305.63131 * 12 10 9 36 36 H 1.08996 * 109.46301 * 301.22037 * 13 12 10 37 37 H 1.09001 * 109.44559 * 181.25213 * 13 12 10 38 38 H 1.08996 * 109.50276 * 178.67975 * 14 13 12 39 39 H 1.08997 * 109.50063 * 58.57845 * 14 13 12 40 40 H 1.08997 * 109.58818 * 294.85000 * 15 14 13 41 41 H 1.08998 * 109.70311 * 174.48987 * 15 14 13 42 42 H 0.97005 * 119.99575 * 180.02562 * 20 19 17 43 43 H 1.07998 * 125.80483 * 0.04617 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7491 0.0060 5 6 3.5462 -0.7176 0.0008 6 6 4.7283 -1.5959 0.0021 7 8 4.5884 -2.8040 0.0031 8 7 5.9653 -1.0607 0.0024 9 6 7.1413 -1.9343 0.0031 10 6 8.4109 -1.0804 0.0026 11 1 8.4308 -0.4520 -0.8878 12 6 9.6378 -1.9905 0.0098 13 6 10.9012 -1.1387 0.1528 14 6 10.8563 -0.3750 1.4783 15 6 9.6410 0.5577 1.4848 16 7 8.4357 -0.2341 1.2034 17 6 7.3583 -0.1884 2.0472 18 1 6.7259 -1.0563 2.1631 19 6 7.0787 0.9733 2.7537 20 7 7.6643 2.1037 2.4196 21 14 5.8713 0.9323 4.1784 22 1 5.7486 2.2921 4.7626 23 1 4.5435 0.4815 3.6893 24 1 6.3623 -0.0094 5.2164 25 6 2.2344 -1.1051 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.8829 2.1372 -0.0009 30 1 4.3981 1.4016 0.0114 31 1 6.0769 -0.0971 0.0013 32 1 7.1270 -2.5638 -0.8866 33 1 7.1263 -2.5630 0.8933 34 1 9.6814 -2.5519 -0.9234 35 1 9.5693 -2.6834 0.8484 36 1 10.9564 -0.4295 -0.6731 37 1 11.7786 -1.7851 0.1357 38 1 11.7670 0.2133 1.5903 39 1 10.7760 -1.0827 2.3034 40 1 9.7632 1.3224 0.7177 41 1 9.5469 1.0319 2.4617 42 1 7.4691 2.9154 2.9135 43 1 1.8767 -2.1241 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024381295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:32 Heat of formation + Delta-G solvation = 14.407378 kcal Electronic energy + Delta-G solvation = -24157.738171 eV Core-core repulsion = 20817.499712 eV Total energy + Delta-G solvation = -3340.238459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.07195 -40.33784 -39.10425 -35.59541 -34.86507 -33.69921 -32.19814 -31.64835 -30.08651 -28.11624 -27.23610 -26.12349 -23.84119 -23.27458 -22.18983 -20.99040 -20.77124 -20.34784 -18.94693 -18.09759 -17.31315 -16.77675 -16.40058 -16.26570 -15.97070 -15.62017 -15.15306 -14.98714 -14.82601 -14.57613 -14.29144 -14.03254 -13.90978 -13.55653 -13.43769 -13.24292 -13.02855 -12.94069 -12.80218 -12.75207 -12.53655 -12.29230 -12.02043 -11.77474 -11.51332 -11.14058 -11.07318 -10.76599 -10.48043 -9.85228 -9.43503 -9.22217 -8.51667 -7.79774 -5.25374 0.85841 1.43493 1.44399 1.50970 1.54552 1.99491 2.51853 2.64333 2.77439 3.36056 3.61698 4.00717 4.03673 4.07899 4.10799 4.23795 4.29355 4.39254 4.45432 4.48256 4.57683 4.64385 4.68199 4.74243 4.80196 4.89473 5.01797 5.06475 5.15742 5.20306 5.23558 5.30381 5.41483 5.48435 5.65836 5.72673 5.79014 5.80976 5.86862 6.10293 6.40573 6.48179 6.88844 7.24283 7.50415 7.92237 8.45156 9.24824 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016465 B = 0.005701 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.148023 B = 4910.104391 C = 6012.423244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.443 5.443 3 C -0.010 4.010 4 C -0.188 4.188 5 C -0.266 4.266 6 C 0.577 3.423 7 O -0.611 6.611 8 N -0.692 5.692 9 C 0.140 3.860 10 C 0.160 3.840 11 H 0.031 0.969 12 C -0.122 4.122 13 C -0.102 4.102 14 C -0.136 4.136 15 C 0.178 3.822 16 N -0.601 5.601 17 C -0.233 4.233 18 H 0.056 0.944 19 C -0.028 4.028 20 N -0.923 5.923 21 Si 0.936 3.064 22 H -0.291 1.291 23 H -0.284 1.284 24 H -0.292 1.292 25 C 0.069 3.931 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.200 0.800 30 H 0.132 0.868 31 H 0.409 0.591 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.001 0.999 41 H 0.050 0.950 42 H 0.248 0.752 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.647 -2.045 -7.109 11.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.118 5.118 3 C -0.137 4.137 4 C -0.212 4.212 5 C -0.276 4.276 6 C 0.367 3.633 7 O -0.497 6.497 8 N -0.340 5.340 9 C 0.016 3.984 10 C 0.054 3.946 11 H 0.048 0.952 12 C -0.161 4.161 13 C -0.139 4.139 14 C -0.175 4.175 15 C 0.053 3.947 16 N -0.325 5.325 17 C -0.364 4.364 18 H 0.073 0.927 19 C -0.224 4.224 20 N -0.569 5.569 21 Si 0.767 3.233 22 H -0.217 1.217 23 H -0.211 1.211 24 H -0.219 1.219 25 C -0.068 4.068 26 H 0.102 0.898 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.217 0.783 30 H 0.150 0.850 31 H 0.246 0.754 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.019 0.981 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -9.121 -2.659 -7.045 11.828 hybrid contribution -0.314 0.724 1.215 1.449 sum -9.435 -1.935 -5.830 11.258 Atomic orbital electron populations 1.22457 0.73883 1.06571 1.04759 1.43887 1.08420 1.04786 1.54666 1.22139 0.89673 0.92684 1.09216 1.22179 0.97538 0.92948 1.08524 1.20506 0.93050 0.94105 1.19910 1.17793 0.83513 0.86768 0.75204 1.90631 1.87511 1.16080 1.55444 1.45826 1.04641 1.11270 1.72236 1.21240 0.84461 0.92542 1.00179 1.20788 0.92800 0.91493 0.89476 0.95183 1.21823 0.94740 0.97727 1.01858 1.21343 0.97273 0.98419 0.96901 1.22056 0.98461 0.99114 0.97834 1.20584 0.84313 0.91046 0.98756 1.44242 1.13297 1.51390 1.23590 1.19105 1.04692 0.94837 1.17738 0.92653 1.25399 1.00014 0.94990 1.02028 1.70105 1.46972 0.98468 1.41354 0.85818 0.80295 0.75954 0.81253 1.21707 1.21054 1.21858 1.21892 0.89316 0.92822 1.02795 0.89782 0.87287 0.87986 0.78316 0.84964 0.75371 0.91143 0.93980 0.89934 0.92862 0.92385 0.90619 0.91599 0.93668 0.98082 0.93181 0.94286 0.79693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 11.03 127.77 1.41 2.15 16 2 N -0.44 -10.47 3.09 -547.92 -1.69 -12.16 16 3 C -0.01 -0.27 11.34 83.11 0.94 0.67 16 4 C -0.19 -6.62 10.56 23.62 0.25 -6.37 16 5 C -0.27 -10.20 6.29 -19.04 -0.12 -10.32 16 6 C 0.58 25.49 7.81 86.62 0.68 26.17 16 7 O -0.61 -29.45 16.91 -4.10 -0.07 -29.52 16 8 N -0.69 -30.09 3.83 -466.54 -1.79 -31.87 16 9 C 0.14 5.74 4.42 86.38 0.38 6.13 16 10 C 0.16 6.42 2.99 44.83 0.13 6.56 16 11 H 0.03 1.23 8.14 -2.38 -0.02 1.22 16 12 C -0.12 -4.01 5.35 30.53 0.16 -3.84 16 13 C -0.10 -3.15 5.89 30.62 0.18 -2.97 16 14 C -0.14 -4.97 6.08 30.67 0.19 -4.78 16 15 C 0.18 8.32 5.27 86.36 0.46 8.77 16 16 N -0.60 -28.69 2.98 -676.00 -2.01 -30.70 16 17 C -0.23 -12.34 6.98 84.03 0.59 -11.75 16 18 H 0.06 3.09 5.85 -2.91 -0.02 3.07 16 19 C -0.03 -1.52 4.97 84.86 0.42 -1.10 16 20 N -0.92 -52.12 11.23 21.65 0.24 -51.88 16 21 Si 0.94 45.99 29.58 68.60 2.03 48.02 16 22 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 25 C 0.07 2.10 11.12 83.92 0.93 3.03 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.11 0.77 8.13 -2.39 -0.02 0.75 16 28 H 0.10 0.85 8.13 -2.39 -0.02 0.83 16 29 H 0.20 3.67 8.06 -2.91 -0.02 3.64 16 30 H 0.13 4.99 7.70 -2.91 -0.02 4.96 16 31 H 0.41 18.66 6.52 -92.71 -0.60 18.06 16 32 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.04 1.90 7.42 -2.39 -0.02 1.88 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.05 2.67 6.19 -2.39 -0.01 2.65 16 42 H 0.25 13.79 8.31 -92.70 -0.77 13.02 16 43 H 0.19 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -70.06 344.80 3.71 -66.35 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.39 Total: 29.43 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 6.60 Total: 12.34 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -5.25 Total: -126.62 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.07 Total: -29.52 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -70.06 3.71 -66.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024381295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.762 kcal (2) G-P(sol) polarization free energy of solvation -70.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds