Wall clock time and date at job start Tue Mar 31 2020 07:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35532 * 125.67636 * 2 1 4 4 C 1.35452 * 108.87242 * 179.97438 * 3 2 1 5 5 C 1.39833 * 107.86511 * 359.97438 * 4 3 2 6 6 C 1.37652 * 125.67814 * 179.97438 * 2 1 3 7 7 C 1.46674 * 126.23536 * 0.04270 * 6 2 1 8 8 O 1.21694 * 119.99843 * 5.69594 * 7 6 2 9 9 N 1.34774 * 120.00054 * 185.68826 * 7 6 2 10 10 C 1.46503 * 119.99820 * 185.10633 * 9 7 6 11 11 C 1.53003 * 109.47076 * 275.00311 * 10 9 7 12 12 C 1.52999 * 109.46818 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47517 * 60.00261 * 12 11 10 14 14 N 1.46495 * 109.47567 * 180.02562 * 13 12 11 15 15 C 1.36938 * 119.99649 * 274.99752 * 14 13 12 16 16 H 1.08000 * 119.99900 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00139 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99920 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00087 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47053 * 90.00231 * 19 17 15 21 21 H 1.48504 * 109.47014 * 210.00151 * 19 17 15 22 22 H 1.48498 * 109.47091 * 329.99763 * 19 17 15 23 23 C 1.53008 * 109.46852 * 300.00064 * 13 12 11 24 24 C 1.52999 * 109.47112 * 59.99688 * 23 13 12 25 25 H 1.09005 * 109.46983 * 86.02661 * 1 2 3 26 26 H 1.09002 * 109.46865 * 206.01825 * 1 2 3 27 27 H 1.08992 * 109.47357 * 326.02054 * 1 2 3 28 28 H 1.07997 * 125.56550 * 359.97438 * 3 2 1 29 29 H 1.08005 * 126.07206 * 179.97438 * 4 3 2 30 30 H 1.07998 * 126.46132 * 179.73717 * 5 4 3 31 31 H 0.96999 * 120.00411 * 5.11036 * 9 7 6 32 32 H 1.09001 * 109.47208 * 35.00546 * 10 9 7 33 33 H 1.08994 * 109.46921 * 300.00044 * 11 10 9 34 34 H 1.08993 * 109.46895 * 60.00361 * 11 10 9 35 35 H 1.09001 * 109.47223 * 300.00086 * 12 11 10 36 36 H 1.08999 * 109.47114 * 179.97438 * 12 11 10 37 37 H 1.08994 * 109.47316 * 59.99425 * 13 12 11 38 38 H 0.96998 * 120.00055 * 94.99402 * 14 13 12 39 39 H 0.96997 * 119.99946 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.47012 * 299.99638 * 23 13 12 41 41 H 1.08996 * 109.47320 * 179.97438 * 23 13 12 42 42 H 1.08999 * 109.47114 * 180.02562 * 24 23 13 43 43 H 1.09001 * 109.47223 * 60.00079 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 0.0006 5 6 3.5780 -0.6887 0.0015 6 6 2.2678 -1.1182 0.0005 7 6 1.8125 -2.5124 0.0002 8 8 0.6267 -2.7652 -0.1051 9 7 2.7072 -3.5136 0.1165 10 6 2.2668 -4.9063 0.0041 11 6 1.7646 -5.3937 1.3647 12 6 1.3052 -6.8484 1.2474 13 6 2.4793 -7.7192 0.7953 14 7 2.0393 -9.1120 0.6824 15 6 2.0357 -9.9205 1.7876 16 1 2.3576 -9.5315 2.7423 17 6 1.6183 -11.2401 1.6809 18 7 1.2265 -11.7143 0.5172 19 14 1.6127 -12.3428 3.1886 20 1 0.2974 -12.2424 3.8705 21 1 1.8493 -13.7491 2.7742 22 1 2.6871 -11.9138 4.1197 23 6 2.9815 -7.2317 -0.5653 24 6 3.4409 -5.7770 -0.4480 25 1 -0.3633 0.0712 -1.0252 26 1 -0.3633 -0.9235 0.4508 27 1 -0.3633 0.8521 0.5743 28 1 1.9081 2.1236 -0.0004 29 1 4.4133 1.3612 0.0003 30 1 4.4583 -1.3143 -0.0018 31 1 3.6428 -3.3121 0.2746 32 1 1.4608 -4.9747 -0.7265 33 1 2.5706 -5.3254 2.0952 34 1 0.9285 -4.7732 1.6869 35 1 0.4994 -6.9172 0.5167 36 1 0.9479 -7.1959 2.2168 37 1 3.2851 -7.6505 1.5259 38 1 1.7505 -9.4614 -0.1751 39 1 0.9345 -12.6363 0.4427 40 1 2.1756 -7.3005 -1.2960 41 1 3.8182 -7.8517 -0.8872 42 1 3.7982 -5.4296 -1.4173 43 1 4.2468 -5.7082 0.2827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026455966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:55 Heat of formation + Delta-G solvation = 9.955426 kcal Electronic energy + Delta-G solvation = -22950.648080 eV Core-core repulsion = 19610.216570 eV Total energy + Delta-G solvation = -3340.431510 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.57440 -39.56773 -37.77372 -34.92572 -33.40636 -32.72001 -30.84425 -30.38490 -29.43125 -27.14215 -26.72443 -23.85257 -22.74837 -22.22506 -21.09499 -20.50940 -19.96139 -19.25896 -18.04079 -16.99267 -16.14465 -15.90824 -15.80422 -15.07686 -14.60747 -14.29580 -14.00877 -13.74959 -13.61792 -13.53822 -13.43924 -12.99656 -12.65827 -12.54097 -12.50054 -12.24810 -11.99865 -11.78494 -11.40890 -11.02439 -10.80651 -10.74031 -10.64879 -10.17302 -10.10032 -9.96477 -9.74090 -9.56761 -9.02229 -8.99247 -8.82841 -8.43871 -6.91593 -5.73342 -3.01655 1.30022 2.43784 2.50676 3.26940 3.28134 3.45494 3.50576 3.52102 4.57813 4.59770 4.63323 4.73075 4.93625 4.98168 5.06757 5.14017 5.17427 5.30424 5.39235 5.54430 5.63385 5.70481 5.75220 5.79703 5.85580 5.90474 5.94053 6.05344 6.26386 6.28873 6.32815 6.47203 6.52790 6.59748 6.68494 6.73583 6.76202 6.94944 7.01881 7.17896 7.46783 7.73294 8.14360 8.45701 9.56528 10.15422 10.49912 11.49504 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.038412 B = 0.002730 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.760722 B =10252.293763 C =10458.081265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.411 5.411 3 C 0.010 3.990 4 C -0.208 4.208 5 C -0.144 4.144 6 C -0.049 4.049 7 C 0.586 3.414 8 O -0.548 6.548 9 N -0.712 5.712 10 C 0.149 3.851 11 C -0.124 4.124 12 C -0.132 4.132 13 C 0.177 3.823 14 N -0.726 5.726 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.120 4.120 24 C -0.119 4.119 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.167 0.833 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.400 0.600 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 26.304 -2.477 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.083 5.083 3 C -0.126 4.126 4 C -0.232 4.232 5 C -0.170 4.170 6 C -0.163 4.163 7 C 0.374 3.626 8 O -0.428 6.428 9 N -0.362 5.362 10 C 0.045 3.955 11 C -0.163 4.163 12 C -0.173 4.173 13 C 0.067 3.933 14 N -0.366 5.366 15 C -0.367 4.367 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.159 4.159 24 C -0.158 4.158 25 H 0.094 0.906 26 H 0.124 0.876 27 H 0.099 0.901 28 H 0.185 0.815 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.235 0.765 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.195 25.963 -2.410 26.269 hybrid contribution 0.237 -0.509 0.633 0.846 sum 3.432 25.454 -1.777 25.745 Atomic orbital electron populations 1.22305 0.76059 1.05546 1.03791 1.43881 1.06885 1.05011 1.52568 1.22018 0.90772 0.91522 1.08269 1.20819 0.95982 0.95046 1.11372 1.21357 0.94448 0.95510 1.05719 1.20177 0.90487 0.87764 1.17888 1.16997 0.85732 0.83463 0.76419 1.90789 1.16200 1.84795 1.50985 1.45826 1.11197 1.06134 1.73056 1.21142 0.97636 0.78058 0.98615 1.21900 1.00674 0.97818 0.95910 1.22225 1.00462 0.92412 1.02188 1.20244 0.93807 0.85410 0.93830 1.42432 1.78467 1.05800 1.09886 1.19245 1.36394 0.91881 0.89190 0.91235 1.24739 1.02288 0.97314 0.96773 1.69663 1.50605 1.15363 1.22617 0.86211 0.77643 0.80231 0.82251 1.21790 1.21827 1.20802 1.21753 1.01257 0.93541 0.99355 1.21762 0.97028 0.95832 1.01156 0.90552 0.87608 0.90093 0.81537 0.84048 0.83861 0.76549 0.89464 0.92268 0.92297 0.92513 0.91820 0.93573 0.78313 0.93570 0.91967 0.91301 0.91773 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 10.64 59.85 0.64 1.18 16 2 N -0.41 -4.21 3.16 -120.24 -0.38 -4.59 16 3 C 0.01 0.08 11.38 -16.91 -0.19 -0.11 16 4 C -0.21 -1.77 10.81 -39.98 -0.43 -2.20 16 5 C -0.14 -1.37 10.35 -39.12 -0.40 -1.78 16 6 C -0.05 -0.57 6.88 -81.98 -0.56 -1.14 16 7 C 0.59 7.86 7.73 -12.86 -0.10 7.76 16 8 O -0.55 -9.02 14.33 5.19 0.07 -8.94 16 9 N -0.71 -8.22 5.05 -55.11 -0.28 -8.50 16 10 C 0.15 2.00 2.42 -67.93 -0.16 1.84 16 11 C -0.12 -1.87 5.50 -26.73 -0.15 -2.02 16 12 C -0.13 -2.42 5.50 -26.73 -0.15 -2.57 16 13 C 0.18 3.46 2.77 -67.93 -0.19 3.27 16 14 N -0.73 -18.19 5.12 -53.43 -0.27 -18.47 16 15 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 19 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.12 -1.92 5.39 -26.73 -0.14 -2.06 16 24 C -0.12 -1.48 5.39 -26.73 -0.14 -1.62 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.11 1.13 6.23 -51.93 -0.32 0.80 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 30 H 0.14 1.03 7.50 -52.49 -0.39 0.63 16 31 H 0.40 3.52 7.56 -40.82 -0.31 3.21 16 32 H 0.09 1.34 7.66 -51.93 -0.40 0.95 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.38 10.24 7.80 -40.82 -0.32 9.92 16 39 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 350.20 15.07 5.28 5.28 Total: -1.00 -33.31 350.20 -8.89 -42.21 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -6.78 Total: 9.88 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.24 Total: -6.70 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.21 Total: -59.27 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.07 Total: -8.94 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.31 -8.89 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026455966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.162 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds