Wall clock time and date at job start Tue Mar 31 2020 07:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36450 * 124.84991 * 2 1 4 4 C 1.34488 * 108.85147 * 179.97438 * 3 2 1 5 5 C 1.46680 * 106.33948 * 0.02562 * 4 3 2 6 6 C 1.47266 * 126.94864 * 179.97438 * 5 4 3 7 7 O 1.21626 * 119.99890 * 180.02562 * 6 5 4 8 8 N 1.34778 * 119.99657 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99771 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46840 * 204.99940 * 9 8 6 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47317 * 59.99960 * 11 10 9 13 13 N 1.46496 * 109.47487 * 179.97438 * 12 11 10 14 14 C 1.36933 * 120.00258 * 274.99944 * 13 12 11 15 15 H 1.07997 * 120.00195 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00104 * 179.97438 * 14 13 12 17 17 N 1.31614 * 120.00154 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47219 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47003 * 120.00388 * 18 16 14 21 21 H 1.48496 * 109.47087 * 239.99988 * 18 16 14 22 22 C 1.53005 * 109.47159 * 300.00546 * 12 11 10 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 12 11 24 24 C 1.34660 * 124.85296 * 180.26938 * 2 1 3 25 25 H 1.09003 * 109.47552 * 90.01833 * 1 2 3 26 26 H 1.09000 * 109.46961 * 210.02256 * 1 2 3 27 27 H 1.09008 * 109.46854 * 330.02015 * 1 2 3 28 28 H 1.07998 * 125.57859 * 359.96341 * 3 2 1 29 29 H 1.08006 * 126.83055 * 180.02562 * 4 3 2 30 30 H 0.97006 * 119.99662 * 0.02562 * 8 6 5 31 31 H 1.08992 * 109.47397 * 325.00275 * 9 8 6 32 32 H 1.09002 * 109.47398 * 300.00326 * 10 9 8 33 33 H 1.09001 * 109.47194 * 60.00507 * 10 9 8 34 34 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 36 36 H 1.09002 * 109.46716 * 60.00091 * 12 11 10 37 37 H 0.97007 * 119.99693 * 95.00333 * 13 12 11 38 38 H 0.96996 * 120.00649 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.46935 * 299.99411 * 22 12 11 40 40 H 1.09001 * 109.46812 * 179.97438 * 22 12 11 41 41 H 1.08993 * 109.47194 * 179.97438 * 23 22 12 42 42 H 1.09002 * 109.46695 * 59.99734 * 23 22 12 43 43 H 1.07999 * 125.79618 * 0.05873 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7491 0.0006 5 6 3.5462 -0.7177 0.0003 6 6 4.7284 -1.5959 0.0002 7 8 4.5884 -2.8040 -0.0005 8 7 5.9653 -1.0607 0.0009 9 6 7.1414 -1.9343 0.0002 10 6 8.3302 -1.1894 0.6107 11 6 9.5586 -2.1015 0.6094 12 6 9.8931 -2.5047 -0.8281 13 7 11.0696 -3.3775 -0.8294 14 6 12.3261 -2.8331 -0.8290 15 1 12.4497 -1.7602 -0.8274 16 6 13.4409 -3.6602 -0.8297 17 7 13.2903 -4.9677 -0.8312 18 14 15.1549 -2.9174 -0.8285 19 1 15.0524 -1.4360 -0.8262 20 1 15.8872 -3.3644 0.3836 21 1 15.8877 -3.3616 -2.0413 22 6 8.7041 -3.2494 -1.4386 23 6 7.4757 -2.3374 -1.4374 24 6 2.2345 -1.1050 -0.0052 25 1 -0.3634 -0.0003 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5136 28 1 1.8829 2.1374 -0.0006 29 1 4.3981 1.4017 0.0011 30 1 6.0769 -0.0970 0.0018 31 1 6.9310 -2.8272 0.5887 32 1 8.5406 -0.2964 0.0222 33 1 8.0919 -0.9019 1.6347 34 1 10.4055 -1.5712 1.0447 35 1 9.3485 -2.9948 1.1977 36 1 10.1032 -1.6114 -1.4164 37 1 10.9586 -4.3412 -0.8305 38 1 14.0692 -5.5457 -0.8313 39 1 8.4940 -4.1427 -0.8503 40 1 8.9423 -3.5363 -2.4629 41 1 6.6289 -2.8678 -1.8727 42 1 7.6859 -1.4441 -2.0256 43 1 1.8767 -2.1240 -0.0109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026476571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:00 Heat of formation + Delta-G solvation = 9.732291 kcal Electronic energy + Delta-G solvation = -22617.837932 eV Core-core repulsion = 19277.396746 eV Total energy + Delta-G solvation = -3340.441186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.45609 -39.48283 -37.66960 -34.68913 -33.29902 -32.67392 -30.55878 -30.29029 -29.41434 -27.70182 -26.50316 -23.76894 -22.58043 -22.17938 -20.93741 -20.23005 -19.91439 -19.19693 -18.04747 -16.97569 -15.99682 -15.85884 -15.75133 -15.02137 -14.59057 -14.46918 -13.98181 -13.64070 -13.57810 -13.47180 -13.38328 -12.89452 -12.79018 -12.67680 -12.46409 -12.26286 -12.03079 -11.68068 -11.35060 -10.85265 -10.67043 -10.63388 -10.62081 -10.15237 -10.06932 -9.79802 -9.62862 -9.45209 -8.96004 -8.83355 -8.75611 -8.53216 -6.87752 -5.70020 -2.98165 1.64818 2.17069 2.49238 3.46858 3.47041 3.52394 3.54796 3.61545 4.30055 4.60017 4.64602 4.65219 4.71059 4.91041 4.98356 5.15018 5.21051 5.21718 5.42977 5.61450 5.63689 5.70336 5.77547 5.79801 5.87836 5.98004 6.00497 6.16322 6.39764 6.41794 6.46111 6.47755 6.56964 6.69318 6.72425 6.80042 6.83777 6.91305 7.07713 7.22050 7.74328 7.76483 8.46462 8.48975 9.59702 10.19702 10.54262 11.52906 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.051413 B = 0.002505 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.478408 B =11175.131184 C =11471.761137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.450 5.450 3 C -0.020 4.020 4 C -0.169 4.169 5 C -0.231 4.231 6 C 0.589 3.411 7 O -0.554 6.554 8 N -0.721 5.721 9 C 0.147 3.853 10 C -0.121 4.121 11 C -0.131 4.131 12 C 0.177 3.823 13 N -0.726 5.726 14 C -0.234 4.234 15 H 0.070 0.930 16 C -0.017 4.017 17 N -0.933 5.933 18 Si 0.905 3.095 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.121 4.121 23 C -0.120 4.120 24 C 0.072 3.928 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.166 0.834 29 H 0.146 0.854 30 H 0.397 0.603 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.938 13.793 2.081 30.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.125 5.125 3 C -0.146 4.146 4 C -0.193 4.193 5 C -0.241 4.241 6 C 0.377 3.623 7 O -0.433 6.433 8 N -0.370 5.370 9 C 0.043 3.957 10 C -0.160 4.160 11 C -0.172 4.172 12 C 0.067 3.933 13 N -0.366 5.366 14 C -0.366 4.366 15 H 0.088 0.912 16 C -0.212 4.212 17 N -0.582 5.582 18 Si 0.736 3.264 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.220 1.220 22 C -0.160 4.160 23 C -0.159 4.159 24 C -0.063 4.063 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.183 0.817 29 H 0.163 0.837 30 H 0.231 0.769 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -27.222 13.066 2.071 30.266 hybrid contribution 0.962 0.602 0.043 1.136 sum -26.260 13.668 2.115 29.679 Atomic orbital electron populations 1.22119 0.76928 1.04662 1.03566 1.43623 1.06761 1.05960 1.56180 1.21737 0.90613 0.91254 1.11006 1.22060 0.96199 0.93283 1.07771 1.20442 0.92707 0.93358 1.17613 1.17376 0.82445 0.87016 0.75448 1.90774 1.86604 1.14718 1.51248 1.45934 1.05449 1.10217 1.75403 1.21066 0.83641 0.93778 0.97205 1.21807 0.94983 0.99148 1.00070 1.22211 0.95301 0.98589 1.01109 1.20241 0.86796 0.93598 0.92639 1.42459 1.00447 1.05227 1.88484 1.19294 0.83451 0.91714 1.42099 0.91179 1.24747 0.97790 0.95367 1.03346 1.69671 1.28728 1.01761 1.58038 0.86141 0.85046 0.78047 0.77123 1.20608 1.21974 1.21968 1.21761 0.94209 0.98493 1.01516 1.21837 0.98247 0.99885 0.95975 1.21805 0.89880 0.91742 1.02923 0.90647 0.89571 0.89611 0.81691 0.83672 0.76944 0.89546 0.91913 0.92273 0.91650 0.92426 0.93637 0.78295 0.93639 0.92086 0.91723 0.92039 0.92142 0.80857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.21 11.03 59.85 0.66 0.87 16 2 N -0.45 -3.27 3.09 -124.52 -0.38 -3.65 16 3 C -0.02 -0.14 11.34 -16.82 -0.19 -0.33 16 4 C -0.17 -1.52 10.56 -37.50 -0.40 -1.91 16 5 C -0.23 -2.70 6.29 -103.35 -0.65 -3.35 16 6 C 0.59 8.49 7.77 -12.59 -0.10 8.40 16 7 O -0.55 -10.03 16.57 5.25 0.09 -9.95 16 8 N -0.72 -9.13 5.07 -54.93 -0.28 -9.41 16 9 C 0.15 2.14 2.46 -67.93 -0.17 1.97 16 10 C -0.12 -1.71 5.39 -26.73 -0.14 -1.85 16 11 C -0.13 -2.36 5.50 -26.73 -0.15 -2.51 16 12 C 0.18 3.59 2.77 -67.93 -0.19 3.40 16 13 N -0.73 -18.60 5.12 -53.43 -0.27 -18.87 16 14 C -0.23 -6.59 9.93 -15.06 -0.15 -6.73 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 17 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 18 Si 0.90 22.71 29.55 -169.99 -5.02 17.69 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 C -0.12 -2.16 5.39 -26.73 -0.14 -2.30 16 23 C -0.12 -1.85 5.49 -26.73 -0.15 -1.99 16 24 C 0.07 0.71 11.12 -16.84 -0.19 0.52 16 25 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.09 0.18 8.13 -51.93 -0.42 -0.24 16 27 H 0.09 0.13 8.13 -51.92 -0.42 -0.30 16 28 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 29 H 0.15 1.01 7.70 -52.48 -0.40 0.61 16 30 H 0.40 3.96 7.73 -40.82 -0.32 3.64 16 31 H 0.09 1.45 7.58 -51.93 -0.39 1.05 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.38 10.51 7.80 -40.82 -0.32 10.19 16 38 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -34.89 355.00 -8.73 -43.62 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.89 Total: 9.66 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.04 Total: -6.41 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.21 Total: -59.96 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.89 -8.73 -43.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026476571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.356 kcal (2) G-P(sol) polarization free energy of solvation -34.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds