Wall clock time and date at job start Tue Mar 31 2020 07:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36450 * 124.84991 * 2 1 4 4 C 1.34488 * 108.85147 * 179.97438 * 3 2 1 5 5 C 1.46680 * 106.33948 * 0.02562 * 4 3 2 6 6 C 1.47266 * 126.94864 * 179.97438 * 5 4 3 7 7 O 1.21626 * 119.99890 * 180.02562 * 6 5 4 8 8 N 1.34778 * 119.99657 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99771 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46840 * 204.99940 * 9 8 6 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47317 * 59.99960 * 11 10 9 13 13 N 1.46496 * 109.47487 * 179.97438 * 12 11 10 14 14 C 1.36933 * 120.00258 * 274.99944 * 13 12 11 15 15 H 1.07997 * 120.00195 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00104 * 179.97438 * 14 13 12 17 17 N 1.31614 * 120.00154 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47219 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47003 * 120.00388 * 18 16 14 21 21 H 1.48496 * 109.47087 * 239.99988 * 18 16 14 22 22 C 1.53005 * 109.47159 * 300.00546 * 12 11 10 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 12 11 24 24 C 1.34660 * 124.85296 * 180.26938 * 2 1 3 25 25 H 1.09003 * 109.47552 * 90.01833 * 1 2 3 26 26 H 1.09000 * 109.46961 * 210.02256 * 1 2 3 27 27 H 1.09008 * 109.46854 * 330.02015 * 1 2 3 28 28 H 1.07998 * 125.57859 * 359.96341 * 3 2 1 29 29 H 1.08006 * 126.83055 * 180.02562 * 4 3 2 30 30 H 0.97006 * 119.99662 * 0.02562 * 8 6 5 31 31 H 1.08992 * 109.47397 * 325.00275 * 9 8 6 32 32 H 1.09002 * 109.47398 * 300.00326 * 10 9 8 33 33 H 1.09001 * 109.47194 * 60.00507 * 10 9 8 34 34 H 1.08996 * 109.47853 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 36 36 H 1.09002 * 109.46716 * 60.00091 * 12 11 10 37 37 H 0.97007 * 119.99693 * 95.00333 * 13 12 11 38 38 H 0.96996 * 120.00649 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.46935 * 299.99411 * 22 12 11 40 40 H 1.09001 * 109.46812 * 179.97438 * 22 12 11 41 41 H 1.08993 * 109.47194 * 179.97438 * 23 22 12 42 42 H 1.09002 * 109.46695 * 59.99734 * 23 22 12 43 43 H 1.07999 * 125.79618 * 0.05873 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7491 0.0006 5 6 3.5462 -0.7177 0.0003 6 6 4.7284 -1.5959 0.0002 7 8 4.5884 -2.8040 -0.0005 8 7 5.9653 -1.0607 0.0009 9 6 7.1414 -1.9343 0.0002 10 6 8.3302 -1.1894 0.6107 11 6 9.5586 -2.1015 0.6094 12 6 9.8931 -2.5047 -0.8281 13 7 11.0696 -3.3775 -0.8294 14 6 12.3261 -2.8331 -0.8290 15 1 12.4497 -1.7602 -0.8274 16 6 13.4409 -3.6602 -0.8297 17 7 13.2903 -4.9677 -0.8312 18 14 15.1549 -2.9174 -0.8285 19 1 15.0524 -1.4360 -0.8262 20 1 15.8872 -3.3644 0.3836 21 1 15.8877 -3.3616 -2.0413 22 6 8.7041 -3.2494 -1.4386 23 6 7.4757 -2.3374 -1.4374 24 6 2.2345 -1.1050 -0.0052 25 1 -0.3634 -0.0003 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5136 28 1 1.8829 2.1374 -0.0006 29 1 4.3981 1.4017 0.0011 30 1 6.0769 -0.0970 0.0018 31 1 6.9310 -2.8272 0.5887 32 1 8.5406 -0.2964 0.0222 33 1 8.0919 -0.9019 1.6347 34 1 10.4055 -1.5712 1.0447 35 1 9.3485 -2.9948 1.1977 36 1 10.1032 -1.6114 -1.4164 37 1 10.9586 -4.3412 -0.8305 38 1 14.0692 -5.5457 -0.8313 39 1 8.4940 -4.1427 -0.8503 40 1 8.9423 -3.5363 -2.4629 41 1 6.6289 -2.8678 -1.8727 42 1 7.6859 -1.4441 -2.0256 43 1 1.8767 -2.1240 -0.0109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026476571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:59 Heat of formation + Delta-G solvation = -13.369914 kcal Electronic energy + Delta-G solvation = -22618.839719 eV Core-core repulsion = 19277.396746 eV Total energy + Delta-G solvation = -3341.442972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.10045 -40.64899 -39.05254 -36.29989 -34.63109 -33.61411 -32.31113 -31.67733 -30.11907 -29.05552 -27.28474 -25.57713 -23.74068 -23.52583 -22.17107 -21.17136 -20.94490 -20.33259 -19.11678 -18.74755 -17.19362 -16.88415 -16.64365 -16.31449 -15.86996 -15.55596 -15.32618 -15.15292 -14.95705 -14.54603 -14.40155 -13.97914 -13.87405 -13.59227 -13.27223 -13.15656 -13.07420 -13.01466 -12.91644 -12.82381 -12.38576 -12.18226 -12.01120 -11.96011 -11.69299 -11.59468 -11.13249 -10.85089 -10.84397 -10.01672 -9.47166 -9.25130 -8.97701 -7.91111 -5.19650 0.80967 1.48366 1.49476 1.57246 1.59473 1.94923 2.47496 2.59010 2.64145 3.41811 3.76149 3.85769 3.92396 4.01928 4.05407 4.12059 4.27021 4.36021 4.41103 4.43084 4.48758 4.56555 4.61505 4.63425 4.70433 4.76701 4.88398 5.01732 5.05247 5.11515 5.14184 5.21746 5.26057 5.31282 5.51043 5.56665 5.63106 5.67161 5.81420 6.10821 6.31239 6.38839 6.76106 7.36236 7.42352 8.13638 8.36669 9.33098 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.051413 B = 0.002505 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.478408 B =11175.131184 C =11471.761137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.444 5.444 3 C -0.011 4.011 4 C -0.183 4.183 5 C -0.266 4.266 6 C 0.584 3.416 7 O -0.603 6.603 8 N -0.707 5.707 9 C 0.154 3.846 10 C -0.106 4.106 11 C -0.123 4.123 12 C 0.173 3.827 13 N -0.741 5.741 14 C -0.232 4.232 15 H 0.079 0.921 16 C -0.083 4.083 17 N -0.974 5.974 18 Si 0.973 3.027 19 H -0.263 1.263 20 H -0.296 1.296 21 H -0.295 1.295 22 C -0.112 4.112 23 C -0.109 4.109 24 C 0.063 3.937 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.202 0.798 29 H 0.163 0.837 30 H 0.413 0.587 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.370 0.630 38 H 0.249 0.751 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.622 17.279 2.203 33.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.137 4.137 4 C -0.206 4.206 5 C -0.276 4.276 6 C 0.375 3.625 7 O -0.486 6.486 8 N -0.357 5.357 9 C 0.049 3.951 10 C -0.145 4.145 11 C -0.163 4.163 12 C 0.065 3.935 13 N -0.380 5.380 14 C -0.364 4.364 15 H 0.097 0.903 16 C -0.275 4.275 17 N -0.625 5.625 18 Si 0.802 3.198 19 H -0.187 1.187 20 H -0.223 1.223 21 H -0.223 1.223 22 C -0.151 4.151 23 C -0.148 4.148 24 C -0.075 4.075 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.127 0.873 28 H 0.219 0.781 29 H 0.180 0.820 30 H 0.250 0.750 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.201 0.799 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -28.957 16.650 2.197 33.475 hybrid contribution 1.325 -0.446 -0.004 1.398 sum -27.633 16.204 2.193 32.108 Atomic orbital electron populations 1.22444 0.74362 1.06293 1.04844 1.43932 1.08334 1.05190 1.54382 1.22332 0.90096 0.92552 1.08752 1.22317 0.97864 0.91904 1.08509 1.20400 0.92189 0.94629 1.20411 1.17870 0.83492 0.86773 0.74404 1.90740 1.87283 1.16885 1.53666 1.45712 1.04412 1.10787 1.74811 1.20812 0.84642 0.93498 0.96158 1.21663 0.92481 0.98630 1.01722 1.22005 0.96836 0.98721 0.98784 1.20475 0.85780 0.93004 0.94231 1.42710 1.01481 1.05176 1.88621 1.19694 0.84486 0.92134 1.40075 0.90297 1.25601 1.01781 0.95821 1.04294 1.69840 1.29379 1.03155 1.60125 0.85065 0.80080 0.78146 0.76459 1.18693 1.22314 1.22288 1.21634 0.94544 0.98426 1.00501 1.21722 0.96400 0.99791 0.96888 1.21903 0.90018 0.92709 1.02824 0.89499 0.88783 0.87289 0.78137 0.81990 0.75013 0.92101 0.89613 0.90353 0.92783 0.93959 0.93312 0.79901 0.94211 0.93348 0.92529 0.92863 0.90344 0.80883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.19 11.03 127.77 1.41 1.60 16 2 N -0.44 -5.33 3.09 -547.88 -1.69 -7.02 16 3 C -0.01 -0.12 11.34 83.12 0.94 0.83 16 4 C -0.18 -2.82 10.56 23.62 0.25 -2.57 16 5 C -0.27 -5.99 6.29 -19.04 -0.12 -6.11 16 6 C 0.58 16.84 7.77 86.62 0.67 17.52 16 7 O -0.60 -22.61 16.57 -4.11 -0.07 -22.68 16 8 N -0.71 -17.06 5.07 -445.95 -2.26 -19.32 16 9 C 0.15 4.37 2.46 44.99 0.11 4.48 16 10 C -0.11 -2.78 5.39 30.59 0.16 -2.62 16 11 C -0.12 -4.37 5.50 30.59 0.17 -4.20 16 12 C 0.17 7.00 2.77 44.99 0.12 7.12 16 13 N -0.74 -38.67 5.12 -322.94 -1.65 -40.33 16 14 C -0.23 -13.08 9.93 84.03 0.83 -12.25 16 15 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 16 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 17 N -0.97 -61.46 13.06 21.65 0.28 -61.18 16 18 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 21 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 22 C -0.11 -4.07 5.39 30.60 0.16 -3.90 16 23 C -0.11 -3.28 5.49 30.59 0.17 -3.11 16 24 C 0.06 1.19 11.12 83.92 0.93 2.12 16 25 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 26 H 0.09 0.17 8.13 -2.39 -0.02 0.15 16 27 H 0.11 -0.12 8.13 -2.38 -0.02 -0.14 16 28 H 0.20 0.69 8.06 -2.91 -0.02 0.66 16 29 H 0.16 1.76 7.70 -2.91 -0.02 1.74 16 30 H 0.41 7.23 7.73 -92.70 -0.72 6.52 16 31 H 0.06 2.08 7.58 -2.39 -0.02 2.06 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 37 H 0.37 21.03 7.80 -92.70 -0.72 20.30 16 38 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -77.70 355.00 2.49 -75.21 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: -0.43 Total: 31.82 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 6.29 Total: -5.54 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -5.32 Total: -127.85 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.07 Total: -22.68 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -77.70 2.49 -75.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026476571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.836 kcal (2) G-P(sol) polarization free energy of solvation -77.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds