Wall clock time and date at job start Tue Mar 31 2020 07:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36946 * 120.00024 * 2 1 4 4 H 1.08001 * 119.99688 * 198.85026 * 3 2 1 5 5 C 1.38809 * 120.00041 * 18.84987 * 3 2 1 6 6 N 1.31623 * 119.99908 * 15.24260 * 5 3 2 7 7 Si 1.86796 * 120.00023 * 195.24685 * 5 3 2 8 8 H 1.48504 * 109.47470 * 59.99833 * 7 5 3 9 9 H 1.48499 * 109.46927 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47088 * 299.99777 * 7 5 3 11 11 C 1.46503 * 120.00181 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.52063 * 179.97438 * 11 2 1 13 13 C 1.53354 * 109.68200 * 59.75328 * 11 2 1 14 14 C 1.53045 * 109.60446 * 178.74743 * 13 11 2 15 15 C 1.53190 * 109.30945 * 61.37482 * 14 13 11 16 16 N 1.46923 * 108.77498 * 305.36074 * 15 14 13 17 17 C 1.34784 * 120.62803 * 233.63163 * 16 15 14 18 18 O 1.21698 * 119.99421 * 171.32210 * 17 16 15 19 19 C 1.46675 * 120.00223 * 351.31855 * 17 16 15 20 20 C 1.37868 * 126.23407 * 332.22521 * 19 17 16 21 21 C 1.39835 * 107.08754 * 180.02562 * 20 19 17 22 22 C 1.35454 * 107.86156 * 359.97438 * 21 20 19 23 23 N 1.35530 * 108.86989 * 359.73266 * 22 21 20 24 24 C 1.46507 * 125.67557 * 180.30136 * 23 22 21 25 25 C 1.46924 * 118.73896 * 53.61700 * 16 15 14 26 26 H 1.08998 * 109.47356 * 275.94573 * 1 2 3 27 27 H 1.09009 * 109.47220 * 35.94768 * 1 2 3 28 28 H 1.09006 * 109.47076 * 155.94511 * 1 2 3 29 29 H 0.96995 * 119.99955 * 180.02562 * 6 5 3 30 30 H 1.08998 * 109.41405 * 58.71122 * 13 11 2 31 31 H 1.08996 * 109.42039 * 298.78483 * 13 11 2 32 32 H 1.08997 * 109.49573 * 301.41977 * 14 13 11 33 33 H 1.08997 * 109.49479 * 181.32482 * 14 13 11 34 34 H 1.09003 * 109.58205 * 185.57641 * 15 14 13 35 35 H 1.08997 * 109.70401 * 65.22205 * 15 14 13 36 36 H 1.08004 * 126.46025 * 359.96141 * 20 19 17 37 37 H 1.08002 * 126.06737 * 179.97438 * 21 20 19 38 38 H 1.08007 * 125.55794 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.46937 * 269.96508 * 24 23 22 40 40 H 1.08992 * 109.47141 * 29.96389 * 24 23 22 41 41 H 1.08994 * 109.47054 * 149.96670 * 24 23 22 42 42 H 1.08994 * 109.58950 * 66.17359 * 25 16 15 43 43 H 1.09001 * 109.58146 * 186.45930 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1862 1.2110 -0.3022 5 6 1.5115 2.3559 0.3884 6 7 0.3658 2.2975 1.0338 7 14 2.2784 4.0131 -0.0050 8 1 2.4233 4.1548 -1.4762 9 1 1.4061 5.0976 0.5128 10 1 3.6152 4.1042 0.6350 11 6 2.1975 -1.2687 0.0006 12 1 3.2693 -1.0704 0.0000 13 6 1.8258 -2.0803 -1.2464 14 6 2.6154 -3.3913 -1.2600 15 6 2.2501 -4.2154 -0.0215 16 7 2.4683 -3.3921 1.1756 17 6 3.2417 -3.8391 2.1849 18 8 3.5442 -3.0919 3.0966 19 6 3.7187 -5.2261 2.1845 20 6 3.0927 -6.3030 1.5934 21 6 3.8895 -7.4260 1.8372 22 6 4.9647 -7.0244 2.5565 23 7 4.8760 -5.6887 2.7687 24 6 5.8482 -4.8736 3.5013 25 6 1.8278 -2.0720 1.2515 26 1 -0.3634 0.1064 1.0221 27 1 -0.3634 0.8320 -0.6033 28 1 -0.3633 -0.9385 -0.4189 29 1 -0.0803 3.1150 1.3049 30 1 2.0654 -1.5027 -2.1392 31 1 0.7583 -2.2995 -1.2313 32 1 3.6832 -3.1729 -1.2499 33 1 2.3675 -3.9559 -2.1588 34 1 2.8809 -5.1032 0.0257 35 1 1.2030 -4.5135 -0.0741 36 1 2.1618 -6.2832 1.0462 37 1 3.6840 -8.4346 1.5100 38 1 5.7647 -7.6634 2.9002 39 1 5.5758 -4.8438 4.5563 40 1 6.8415 -5.3095 3.3948 41 1 5.8507 -3.8610 3.0980 42 1 0.7457 -2.1932 1.3013 43 1 2.1780 -1.5465 2.1399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027303670.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:22 Heat of formation + Delta-G solvation = 32.764502 kcal Electronic energy + Delta-G solvation = -24058.282819 eV Core-core repulsion = 20718.840385 eV Total energy + Delta-G solvation = -3339.442434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.43806 -40.66747 -38.77195 -36.86119 -34.30634 -33.54206 -32.85000 -31.22222 -29.59753 -28.07290 -27.45725 -26.53279 -25.29866 -23.29465 -22.71796 -21.58090 -20.65305 -19.89983 -18.86030 -18.20129 -17.48181 -17.03596 -16.56263 -16.43540 -15.75369 -15.66313 -15.38658 -15.15545 -14.79275 -14.51575 -14.33736 -14.09465 -13.88384 -13.88083 -13.51910 -13.27927 -13.20859 -12.96463 -12.89455 -12.74604 -12.45481 -12.22586 -12.13948 -12.07166 -11.73532 -11.62150 -11.42185 -11.03112 -10.65152 -9.78003 -9.61545 -9.10860 -8.82116 -7.85423 -5.30886 0.53929 1.43526 1.45602 1.52482 1.58273 1.86655 2.26353 2.27147 2.49988 3.26910 3.53256 3.60380 3.94034 3.97517 4.07411 4.15634 4.23069 4.25386 4.32405 4.34520 4.51224 4.56561 4.61983 4.65397 4.69105 4.77117 4.88635 4.93934 5.03105 5.12406 5.20422 5.26600 5.30130 5.40274 5.47612 5.53879 5.59755 5.71160 5.88978 6.02067 6.28482 6.35076 6.42694 7.07741 7.12409 7.84358 8.25507 9.17254 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025021 B = 0.004030 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.778835 B = 6945.914097 C = 7503.753342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.609 5.609 3 C -0.268 4.268 4 H 0.066 0.934 5 C -0.052 4.052 6 N -0.937 5.937 7 Si 0.969 3.031 8 H -0.275 1.275 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.168 3.832 12 H 0.040 0.960 13 C -0.122 4.122 14 C -0.121 4.121 15 C 0.089 3.911 16 N -0.593 5.593 17 C 0.573 3.427 18 O -0.599 6.599 19 C -0.085 4.085 20 C -0.139 4.139 21 C -0.214 4.214 22 C 0.022 3.978 23 N -0.424 5.424 24 C 0.072 3.928 25 C 0.117 3.883 26 H -0.001 1.001 27 H 0.018 0.982 28 H 0.038 0.962 29 H 0.249 0.751 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.165 0.835 37 H 0.172 0.828 38 H 0.206 0.794 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.765 -23.323 -2.558 24.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.331 5.331 3 C -0.398 4.398 4 H 0.084 0.916 5 C -0.247 4.247 6 N -0.584 5.584 7 Si 0.797 3.203 8 H -0.201 1.201 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.060 3.940 12 H 0.059 0.941 13 C -0.161 4.161 14 C -0.159 4.159 15 C -0.031 4.031 16 N -0.324 5.324 17 C 0.364 3.636 18 O -0.482 6.482 19 C -0.197 4.197 20 C -0.165 4.165 21 C -0.237 4.237 22 C -0.113 4.113 23 N -0.098 5.098 24 C -0.069 4.069 25 C -0.008 4.008 26 H 0.017 0.983 27 H 0.037 0.963 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.108 0.892 36 H 0.182 0.818 37 H 0.189 0.811 38 H 0.222 0.778 39 H 0.094 0.906 40 H 0.140 0.860 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.053 -22.520 -1.856 23.988 hybrid contribution 0.067 1.832 0.443 1.886 sum 8.120 -20.688 -1.414 22.269 Atomic orbital electron populations 1.20513 0.82263 0.96227 0.97471 1.44191 1.02323 1.00902 1.85718 1.19518 0.96333 0.86096 1.37865 0.91597 1.25709 0.98479 1.01555 0.98944 1.70259 1.19258 1.27086 1.41761 0.85312 0.77406 0.79401 0.78163 1.20081 1.21777 1.20625 1.20801 0.94660 0.85279 0.93223 0.94146 1.21986 1.00719 0.96136 0.97307 1.21886 0.99776 0.95489 0.98789 1.22600 1.03628 0.94562 0.82333 1.47957 1.48149 1.17889 1.18424 1.17678 0.78093 0.86163 0.81644 1.90776 1.59793 1.59174 1.38500 1.19944 0.94676 0.93413 1.11710 1.21811 1.01528 0.91198 1.01971 1.21230 0.96338 0.99969 1.06202 1.22738 1.02956 0.82353 1.03252 1.44116 1.16962 1.08632 1.40050 1.22193 0.92400 0.95543 0.96809 1.22032 0.96482 0.82325 0.99981 0.98285 0.96304 0.94386 0.94210 0.92421 0.91390 0.92682 0.87059 0.86102 0.89182 0.81766 0.81095 0.77759 0.90599 0.85988 0.92042 0.91764 0.93759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.05 7.91 127.77 1.01 10.06 16 2 N -0.61 -31.62 2.83 -701.75 -1.98 -33.60 16 3 C -0.27 -15.45 9.63 84.03 0.81 -14.64 16 4 H 0.07 3.74 7.80 -2.91 -0.02 3.72 16 5 C -0.05 -3.01 5.07 84.86 0.43 -2.58 16 6 N -0.94 -57.28 10.59 21.65 0.23 -57.05 16 7 Si 0.97 46.77 29.58 68.60 2.03 48.80 16 8 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 9 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 11 C 0.17 7.18 2.75 45.17 0.12 7.30 16 12 H 0.04 1.88 7.84 -2.39 -0.02 1.86 16 13 C -0.12 -3.92 5.14 30.73 0.16 -3.76 16 14 C -0.12 -2.82 6.08 30.67 0.19 -2.63 16 15 C 0.09 2.04 5.09 86.36 0.44 2.48 16 16 N -0.59 -19.80 2.97 -823.63 -2.45 -22.25 16 17 C 0.57 20.76 7.39 86.44 0.64 21.39 16 18 O -0.60 -27.03 15.01 -4.34 -0.07 -27.09 16 19 C -0.08 -2.35 6.33 40.35 0.26 -2.09 16 20 C -0.14 -2.85 8.44 22.57 0.19 -2.66 16 21 C -0.21 -3.37 10.81 22.01 0.24 -3.14 16 22 C 0.02 0.34 11.38 83.48 0.95 1.29 16 23 N -0.42 -9.72 3.16 -534.32 -1.69 -11.41 16 24 C 0.07 1.45 10.44 127.77 1.33 2.78 16 25 C 0.12 4.84 5.79 86.36 0.50 5.34 16 26 H 0.00 -0.07 7.39 -2.39 -0.02 -0.08 16 27 H 0.02 1.00 7.17 -2.38 -0.02 0.99 16 28 H 0.04 1.58 6.47 -2.38 -0.02 1.57 16 29 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 2.08 6.73 -2.39 -0.02 2.06 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.12 2.30 4.34 -2.39 -0.01 2.29 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.17 2.71 6.40 -2.91 -0.02 2.69 16 37 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.21 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.63 7.15 -2.39 -0.02 1.61 16 42 H 0.06 2.61 7.51 -2.39 -0.02 2.59 16 43 H 0.04 2.23 7.00 -2.39 -0.02 2.22 16 Total: -1.00 -77.47 336.80 4.33 -73.14 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.00 Total: 10.33 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 7.27 Total: 19.14 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -5.89 Total: -124.31 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.07 Total: -27.09 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -77.47 4.33 -73.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027303670.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.901 kcal (2) G-P(sol) polarization free energy of solvation -77.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds