Wall clock time and date at job start Tue Mar 31 2020 07:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 119.99985 * 2 1 4 4 H 1.07999 * 120.00110 * 204.04406 * 3 2 1 5 5 C 1.38813 * 120.00002 * 24.04574 * 3 2 1 6 6 N 1.31618 * 120.00127 * 16.59309 * 5 3 2 7 7 Si 1.86793 * 120.00073 * 196.58873 * 5 3 2 8 8 H 1.48505 * 109.47355 * 90.00220 * 7 5 3 9 9 H 1.48505 * 109.47358 * 210.00313 * 7 5 3 10 10 H 1.48504 * 109.47266 * 330.00176 * 7 5 3 11 11 C 1.46498 * 119.99927 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.49639 * 179.97438 * 11 2 1 13 13 C 1.53041 * 109.49724 * 299.99761 * 11 2 1 14 14 C 1.53038 * 109.53772 * 181.31861 * 13 11 2 15 15 C 1.53193 * 109.31267 * 298.63379 * 14 13 11 16 16 N 1.46921 * 108.77440 * 54.63490 * 15 14 13 17 17 C 1.34776 * 120.62925 * 126.41335 * 16 15 14 18 18 O 1.21695 * 120.00314 * 188.72154 * 17 16 15 19 19 C 1.46678 * 119.99920 * 8.72255 * 17 16 15 20 20 C 1.37869 * 126.23449 * 27.91830 * 19 17 16 21 21 C 1.39834 * 107.08389 * 179.97438 * 20 19 17 22 22 C 1.35449 * 107.86870 * 359.97438 * 21 20 19 23 23 N 1.35530 * 108.86845 * 359.77060 * 22 21 20 24 24 C 1.46505 * 125.67636 * 180.26457 * 23 22 21 25 25 C 1.46925 * 118.74254 * 306.39356 * 16 15 14 26 26 H 1.09000 * 109.46845 * 274.63084 * 1 2 3 27 27 H 1.08995 * 109.46847 * 34.62772 * 1 2 3 28 28 H 1.08992 * 109.47324 * 154.63472 * 1 2 3 29 29 H 0.97000 * 120.00207 * 180.02562 * 6 5 3 30 30 H 1.09003 * 109.45767 * 301.33736 * 13 11 2 31 31 H 1.08997 * 109.46021 * 61.29700 * 13 11 2 32 32 H 1.09001 * 109.50110 * 58.58414 * 14 13 11 33 33 H 1.08999 * 109.49890 * 178.64690 * 14 13 11 34 34 H 1.09004 * 109.58473 * 174.42666 * 15 14 13 35 35 H 1.09001 * 109.58513 * 294.70483 * 15 14 13 36 36 H 1.08000 * 126.45663 * 359.92350 * 20 19 17 37 37 H 1.08007 * 126.06384 * 180.02562 * 21 20 19 38 38 H 1.07995 * 125.56680 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.47082 * 266.77561 * 24 23 22 40 40 H 1.08992 * 109.47189 * 26.78002 * 24 23 22 41 41 H 1.09009 * 109.46995 * 146.77851 * 24 23 22 42 42 H 1.09003 * 109.58329 * 293.82615 * 25 16 15 43 43 H 1.08994 * 109.58784 * 173.39772 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1594 1.2265 -0.3811 5 6 1.5460 2.3359 0.4898 6 7 0.4697 2.2449 1.2419 7 14 2.2612 4.0126 0.0818 8 1 1.6460 4.5218 -1.1703 9 1 1.9762 4.9560 1.1927 10 1 3.7300 3.8930 -0.1014 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0700 -0.0009 13 6 1.8283 -2.0723 1.2485 14 6 2.6176 -3.3833 1.2655 15 6 2.2496 -4.2123 0.0310 16 7 2.4653 -3.3937 -1.1698 17 6 3.2357 -3.8451 -2.1793 18 8 3.5370 -3.1015 -3.0943 19 6 3.7110 -5.2327 -2.1752 20 6 3.0837 -6.3072 -1.5814 21 6 3.8791 -7.4318 -1.8222 22 6 4.9542 -7.0337 -2.5435 23 7 4.8612 -5.7005 -2.7693 24 6 5.8261 -4.8915 -3.5182 25 6 1.8248 -2.0738 -1.2494 26 1 -0.3633 0.0830 1.0243 27 1 -0.3633 0.8456 -0.5839 28 1 -0.3633 -0.9285 -0.4402 29 1 0.0476 3.0485 1.5839 30 1 2.0699 -1.4913 2.1386 31 1 0.7606 -2.2914 1.2368 32 1 3.6855 -3.1652 1.2522 33 1 2.3721 -3.9440 2.1674 34 1 2.8801 -5.1003 -0.0140 35 1 1.2027 -4.5101 0.0896 36 1 2.1537 -6.2845 -1.0327 37 1 3.6723 -8.4393 -1.4924 38 1 5.7528 -7.6746 -2.8864 39 1 6.5520 -4.4609 -2.8286 40 1 6.3424 -5.5205 -4.2433 41 1 5.3014 -4.0910 -4.0400 42 1 0.7426 -2.1951 -1.2964 43 1 2.1750 -1.5508 -2.1393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027303671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:28 Heat of formation + Delta-G solvation = 51.140366 kcal Electronic energy + Delta-G solvation = -24027.006905 eV Core-core repulsion = 20688.361309 eV Total energy + Delta-G solvation = -3338.645597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.51399 -39.41156 -37.27896 -35.15195 -33.10643 -32.18393 -31.32705 -29.86107 -28.27922 -26.62681 -25.98581 -25.26986 -23.57785 -22.03637 -21.31767 -20.72557 -19.28819 -18.71428 -17.21056 -16.68837 -16.24366 -15.59643 -15.41328 -14.85505 -14.58094 -14.20535 -13.88038 -13.70765 -13.50244 -13.36757 -13.16634 -12.70855 -12.65004 -12.44220 -12.35733 -12.20248 -12.04177 -11.89067 -11.01652 -10.87199 -10.81908 -10.60363 -10.38299 -10.27295 -10.09333 -9.87827 -9.81259 -9.64130 -8.79117 -8.61246 -8.40303 -8.15666 -6.72321 -5.71503 -3.17840 1.52888 2.54411 2.67740 3.32250 3.40812 3.41267 3.47531 3.49143 4.51917 4.60408 4.69017 4.87769 5.07011 5.10129 5.25907 5.30296 5.31878 5.38632 5.48576 5.51868 5.57986 5.66473 5.78602 5.90466 5.97679 6.03818 6.08253 6.21749 6.25722 6.42582 6.53164 6.64185 6.71551 6.82962 6.90372 6.97690 7.04094 7.11280 7.33871 7.63138 7.71218 7.83856 8.32182 8.42701 9.24286 9.87576 10.36974 11.33036 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026406 B = 0.003960 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.094354 B = 7068.259101 C = 7698.468093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.591 5.591 3 C -0.257 4.257 4 H 0.067 0.933 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.132 4.132 14 C -0.132 4.132 15 C 0.092 3.908 16 N -0.590 5.590 17 C 0.583 3.417 18 O -0.551 6.551 19 C -0.039 4.039 20 C -0.151 4.151 21 C -0.209 4.209 22 C 0.006 3.994 23 N -0.413 5.413 24 C 0.062 3.938 25 C 0.099 3.901 26 H 0.032 0.968 27 H 0.038 0.962 28 H 0.002 0.998 29 H 0.252 0.748 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.166 0.834 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.510 -19.747 -4.072 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.312 5.312 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.060 3.940 12 H 0.083 0.917 13 C -0.172 4.172 14 C -0.171 4.171 15 C -0.031 4.031 16 N -0.323 5.323 17 C 0.372 3.628 18 O -0.430 6.430 19 C -0.153 4.153 20 C -0.177 4.177 21 C -0.233 4.233 22 C -0.129 4.129 23 N -0.086 5.086 24 C -0.079 4.079 25 C -0.024 4.024 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.020 0.980 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.167 0.833 37 H 0.159 0.841 38 H 0.183 0.817 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.084 0.916 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.798 -18.912 -4.675 20.633 hybrid contribution 0.265 0.884 -0.042 0.923 sum 7.063 -18.028 -4.718 19.929 Atomic orbital electron populations 1.20780 0.82810 0.95536 0.99464 1.43878 1.01701 1.00060 1.85609 1.19211 0.99150 0.85470 1.34800 0.91480 1.24985 0.98369 0.98451 0.97580 1.70078 1.22555 1.27380 1.34745 0.86285 0.78692 0.84232 0.77532 1.21462 1.21814 1.20473 1.20582 0.96466 0.86237 0.90676 0.91729 1.22129 0.99416 0.94751 1.00902 1.21937 1.00975 0.97405 0.96746 1.22287 1.01708 0.94704 0.84379 1.47845 1.48627 1.18871 1.16909 1.17052 0.78567 0.84843 0.82345 1.90772 1.58123 1.57631 1.36505 1.20203 0.92568 0.94746 1.07824 1.21507 1.01295 0.91499 1.03358 1.20817 0.96759 0.99198 1.06524 1.21971 1.02207 0.83560 1.05181 1.43872 1.17699 1.07642 1.39370 1.22291 0.92265 0.96831 0.96545 1.22454 0.96710 0.81028 1.02242 0.94960 0.94358 0.98000 0.93782 0.91465 0.92454 0.91954 0.91216 0.88326 0.91444 0.83333 0.84116 0.81676 0.90738 0.89797 0.87718 0.91636 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 8.07 59.85 0.48 4.34 16 2 N -0.59 -14.80 2.81 -173.35 -0.49 -15.28 16 3 C -0.26 -7.15 9.55 -15.06 -0.14 -7.29 16 4 H 0.07 1.86 7.85 -52.49 -0.41 1.45 16 5 C 0.00 0.14 5.02 -17.43 -0.09 0.05 16 6 N -0.90 -26.35 10.99 55.49 0.61 -25.74 16 7 Si 0.90 22.16 29.58 -169.99 -5.03 17.13 16 8 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 C 0.17 3.52 2.74 -67.81 -0.19 3.34 16 12 H 0.06 1.44 7.87 -51.93 -0.41 1.03 16 13 C -0.13 -2.36 5.15 -26.69 -0.14 -2.50 16 14 C -0.13 -1.81 6.08 -26.61 -0.16 -1.98 16 15 C 0.09 1.17 5.09 -3.71 -0.02 1.16 16 16 N -0.59 -9.51 2.97 -174.31 -0.52 -10.03 16 17 C 0.58 9.85 7.49 -12.85 -0.10 9.76 16 18 O -0.55 -10.94 14.52 5.19 0.08 -10.87 16 19 C -0.04 -0.55 6.33 -81.98 -0.52 -1.07 16 20 C -0.15 -1.76 8.44 -39.12 -0.33 -2.09 16 21 C -0.21 -2.09 10.81 -39.98 -0.43 -2.52 16 22 C 0.01 0.05 11.37 -16.91 -0.19 -0.14 16 23 N -0.41 -4.97 3.16 -120.24 -0.38 -5.35 16 24 C 0.06 0.62 10.81 59.85 0.65 1.27 16 25 C 0.10 1.86 5.80 -3.71 -0.02 1.84 16 26 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 27 H 0.04 1.00 7.47 -51.93 -0.39 0.61 16 28 H 0.00 0.03 6.35 -51.93 -0.33 -0.30 16 29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.02 7.72 -51.93 -0.40 0.62 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.12 4.36 -51.93 -0.23 0.89 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.15 1.50 6.41 -52.49 -0.34 1.16 16 37 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.57 8.13 -51.93 -0.42 0.14 16 41 H 0.10 1.30 6.35 -51.92 -0.33 0.97 16 42 H 0.07 1.21 6.49 -51.93 -0.34 0.87 16 43 H 0.09 1.91 7.00 -51.93 -0.36 1.55 16 LS Contribution 336.57 15.07 5.07 5.07 Total: -1.00 -32.52 336.57 -8.28 -40.81 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.43 Total: 0.09 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -1.20 Total: 4.16 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.77 Total: -56.40 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.52 -8.28 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027303671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.948 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds