Wall clock time and date at job start Tue Mar 31 2020 07:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 119.99985 * 2 1 4 4 H 1.07999 * 120.00110 * 204.04406 * 3 2 1 5 5 C 1.38813 * 120.00002 * 24.04574 * 3 2 1 6 6 N 1.31618 * 120.00127 * 16.59309 * 5 3 2 7 7 Si 1.86793 * 120.00073 * 196.58873 * 5 3 2 8 8 H 1.48505 * 109.47355 * 90.00220 * 7 5 3 9 9 H 1.48505 * 109.47358 * 210.00313 * 7 5 3 10 10 H 1.48504 * 109.47266 * 330.00176 * 7 5 3 11 11 C 1.46498 * 119.99927 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.49639 * 179.97438 * 11 2 1 13 13 C 1.53041 * 109.49724 * 299.99761 * 11 2 1 14 14 C 1.53038 * 109.53772 * 181.31861 * 13 11 2 15 15 C 1.53193 * 109.31267 * 298.63379 * 14 13 11 16 16 N 1.46921 * 108.77440 * 54.63490 * 15 14 13 17 17 C 1.34776 * 120.62925 * 126.41335 * 16 15 14 18 18 O 1.21695 * 120.00314 * 188.72154 * 17 16 15 19 19 C 1.46678 * 119.99920 * 8.72255 * 17 16 15 20 20 C 1.37869 * 126.23449 * 27.91830 * 19 17 16 21 21 C 1.39834 * 107.08389 * 179.97438 * 20 19 17 22 22 C 1.35449 * 107.86870 * 359.97438 * 21 20 19 23 23 N 1.35530 * 108.86845 * 359.77060 * 22 21 20 24 24 C 1.46505 * 125.67636 * 180.26457 * 23 22 21 25 25 C 1.46925 * 118.74254 * 306.39356 * 16 15 14 26 26 H 1.09000 * 109.46845 * 274.63084 * 1 2 3 27 27 H 1.08995 * 109.46847 * 34.62772 * 1 2 3 28 28 H 1.08992 * 109.47324 * 154.63472 * 1 2 3 29 29 H 0.97000 * 120.00207 * 180.02562 * 6 5 3 30 30 H 1.09003 * 109.45767 * 301.33736 * 13 11 2 31 31 H 1.08997 * 109.46021 * 61.29700 * 13 11 2 32 32 H 1.09001 * 109.50110 * 58.58414 * 14 13 11 33 33 H 1.08999 * 109.49890 * 178.64690 * 14 13 11 34 34 H 1.09004 * 109.58473 * 174.42666 * 15 14 13 35 35 H 1.09001 * 109.58513 * 294.70483 * 15 14 13 36 36 H 1.08000 * 126.45663 * 359.92350 * 20 19 17 37 37 H 1.08007 * 126.06384 * 180.02562 * 21 20 19 38 38 H 1.07995 * 125.56680 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.47082 * 266.77561 * 24 23 22 40 40 H 1.08992 * 109.47189 * 26.78002 * 24 23 22 41 41 H 1.09009 * 109.46995 * 146.77851 * 24 23 22 42 42 H 1.09003 * 109.58329 * 293.82615 * 25 16 15 43 43 H 1.08994 * 109.58784 * 173.39772 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1594 1.2265 -0.3811 5 6 1.5460 2.3359 0.4898 6 7 0.4697 2.2449 1.2419 7 14 2.2612 4.0126 0.0818 8 1 1.6460 4.5218 -1.1703 9 1 1.9762 4.9560 1.1927 10 1 3.7300 3.8930 -0.1014 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0700 -0.0009 13 6 1.8283 -2.0723 1.2485 14 6 2.6176 -3.3833 1.2655 15 6 2.2496 -4.2123 0.0310 16 7 2.4653 -3.3937 -1.1698 17 6 3.2357 -3.8451 -2.1793 18 8 3.5370 -3.1015 -3.0943 19 6 3.7110 -5.2327 -2.1752 20 6 3.0837 -6.3072 -1.5814 21 6 3.8791 -7.4318 -1.8222 22 6 4.9542 -7.0337 -2.5435 23 7 4.8612 -5.7005 -2.7693 24 6 5.8261 -4.8915 -3.5182 25 6 1.8248 -2.0738 -1.2494 26 1 -0.3633 0.0830 1.0243 27 1 -0.3633 0.8456 -0.5839 28 1 -0.3633 -0.9285 -0.4402 29 1 0.0476 3.0485 1.5839 30 1 2.0699 -1.4913 2.1386 31 1 0.7606 -2.2914 1.2368 32 1 3.6855 -3.1652 1.2522 33 1 2.3721 -3.9440 2.1674 34 1 2.8801 -5.1003 -0.0140 35 1 1.2027 -4.5101 0.0896 36 1 2.1537 -6.2845 -1.0327 37 1 3.6723 -8.4393 -1.4924 38 1 5.7528 -7.6746 -2.8864 39 1 6.5520 -4.4609 -2.8286 40 1 6.3424 -5.5205 -4.2433 41 1 5.3014 -4.0910 -4.0400 42 1 0.7426 -2.1951 -1.2964 43 1 2.1750 -1.5508 -2.1393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027303671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:28 Heat of formation + Delta-G solvation = 31.390081 kcal Electronic energy + Delta-G solvation = -24027.863342 eV Core-core repulsion = 20688.361309 eV Total energy + Delta-G solvation = -3339.502033 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.43199 -40.67747 -38.77408 -36.84835 -34.29478 -33.51763 -32.91021 -31.21794 -29.61362 -28.05446 -27.44415 -26.52721 -25.32209 -23.28281 -22.73223 -21.58150 -20.66486 -19.90803 -18.84274 -18.17279 -17.50788 -17.01072 -16.58264 -16.34326 -15.80913 -15.68198 -15.43667 -15.11372 -14.79093 -14.57352 -14.38584 -14.08369 -13.92450 -13.80471 -13.63648 -13.22096 -13.14982 -12.94004 -12.92716 -12.75336 -12.47770 -12.31884 -12.07817 -11.96584 -11.80166 -11.63102 -11.40846 -11.02635 -10.68292 -9.78500 -9.60847 -9.10267 -8.76535 -7.86425 -5.35382 0.53789 1.42509 1.44762 1.52640 1.57846 1.87469 2.26928 2.28069 2.49459 3.25151 3.53053 3.59934 3.96719 3.98281 4.06926 4.14402 4.21472 4.25137 4.34180 4.34570 4.51682 4.57793 4.61530 4.67657 4.72959 4.77153 4.87172 4.90100 5.00783 5.10882 5.21171 5.23549 5.30594 5.41597 5.47659 5.48771 5.62451 5.68050 5.89413 6.03389 6.30337 6.35056 6.42352 7.07099 7.12138 7.82891 8.26547 9.15544 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026406 B = 0.003960 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.094354 B = 7068.259101 C = 7698.468093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.608 5.608 3 C -0.271 4.271 4 H 0.058 0.942 5 C -0.043 4.043 6 N -0.929 5.929 7 Si 0.964 3.036 8 H -0.286 1.286 9 H -0.289 1.289 10 H -0.273 1.273 11 C 0.169 3.831 12 H 0.039 0.961 13 C -0.122 4.122 14 C -0.122 4.122 15 C 0.093 3.907 16 N -0.592 5.592 17 C 0.577 3.423 18 O -0.596 6.596 19 C -0.085 4.085 20 C -0.139 4.139 21 C -0.216 4.216 22 C 0.022 3.978 23 N -0.424 5.424 24 C 0.061 3.939 25 C 0.116 3.884 26 H 0.011 0.989 27 H 0.010 0.990 28 H 0.036 0.964 29 H 0.250 0.750 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.165 0.835 37 H 0.170 0.830 38 H 0.205 0.795 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 -23.138 -3.826 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.330 5.330 3 C -0.401 4.401 4 H 0.076 0.924 5 C -0.239 4.239 6 N -0.575 5.575 7 Si 0.792 3.208 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.198 1.198 11 C 0.061 3.939 12 H 0.058 0.942 13 C -0.161 4.161 14 C -0.161 4.161 15 C -0.028 4.028 16 N -0.323 5.323 17 C 0.369 3.631 18 O -0.479 6.479 19 C -0.198 4.198 20 C -0.165 4.165 21 C -0.239 4.239 22 C -0.113 4.113 23 N -0.097 5.097 24 C -0.080 4.080 25 C -0.009 4.009 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.124 0.876 34 H 0.139 0.861 35 H 0.109 0.891 36 H 0.182 0.818 37 H 0.188 0.812 38 H 0.221 0.779 39 H 0.095 0.905 40 H 0.138 0.862 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.551 -22.348 -4.413 23.998 hybrid contribution 0.103 1.812 -0.156 1.822 sum 7.654 -20.536 -4.569 22.387 Atomic orbital electron populations 1.20521 0.82521 0.95998 0.97865 1.44069 1.02126 1.00886 1.85943 1.19424 0.99094 0.87120 1.34457 0.92406 1.25679 0.99011 1.01513 0.97726 1.70208 1.23679 1.27916 1.35675 0.85325 0.78248 0.80130 0.77090 1.21314 1.21562 1.19800 1.20681 0.94620 0.85438 0.93178 0.94226 1.21940 1.00381 0.96117 0.97677 1.21896 0.99664 0.95502 0.98990 1.22550 1.03681 0.94489 0.82094 1.47872 1.48399 1.17933 1.18144 1.17585 0.77864 0.86064 0.81628 1.90741 1.59721 1.59246 1.38173 1.19926 0.94928 0.93477 1.11456 1.21814 1.01506 0.91233 1.01968 1.21224 0.96309 0.99973 1.06405 1.22731 1.02731 0.82613 1.03245 1.44110 1.17450 1.08684 1.39442 1.22332 0.91745 0.96842 0.97078 1.21956 0.97007 0.82357 0.99534 0.97084 0.97138 0.94608 0.94069 0.93993 0.91877 0.92812 0.87645 0.86087 0.89066 0.81804 0.81241 0.77863 0.90469 0.86167 0.90904 0.90909 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.75 8.07 127.77 1.03 9.78 16 2 N -0.61 -31.52 2.81 -702.36 -1.97 -33.49 16 3 C -0.27 -15.64 9.55 84.03 0.80 -14.84 16 4 H 0.06 3.37 7.85 -2.91 -0.02 3.34 16 5 C -0.04 -2.49 5.02 84.86 0.43 -2.06 16 6 N -0.93 -55.64 10.99 21.65 0.24 -55.40 16 7 Si 0.96 46.62 29.58 68.60 2.03 48.65 16 8 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 11 C 0.17 7.22 2.74 45.07 0.12 7.35 16 12 H 0.04 1.86 7.87 -2.39 -0.02 1.84 16 13 C -0.12 -4.30 5.15 30.62 0.16 -4.14 16 14 C -0.12 -3.09 6.08 30.67 0.19 -2.91 16 15 C 0.09 2.13 5.09 86.36 0.44 2.57 16 16 N -0.59 -18.87 2.97 -823.63 -2.45 -21.32 16 17 C 0.58 19.73 7.49 86.45 0.65 20.38 16 18 O -0.60 -24.96 14.52 -4.33 -0.06 -25.02 16 19 C -0.09 -2.26 6.33 40.35 0.26 -2.01 16 20 C -0.14 -2.77 8.44 22.57 0.19 -2.58 16 21 C -0.22 -3.34 10.81 22.01 0.24 -3.10 16 22 C 0.02 0.33 11.37 83.48 0.95 1.28 16 23 N -0.42 -9.32 3.16 -534.32 -1.69 -11.01 16 24 C 0.06 1.16 10.81 127.77 1.38 2.55 16 25 C 0.12 4.47 5.80 86.36 0.50 4.97 16 26 H 0.01 0.59 7.34 -2.39 -0.02 0.57 16 27 H 0.01 0.54 7.47 -2.39 -0.02 0.52 16 28 H 0.04 1.50 6.35 -2.39 -0.02 1.48 16 29 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 2.15 7.72 -2.39 -0.02 2.14 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.12 2.31 4.36 -2.38 -0.01 2.30 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.16 2.63 6.41 -2.91 -0.02 2.61 16 37 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.20 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.12 1.32 8.13 -2.39 -0.02 1.30 16 41 H 0.07 1.89 6.35 -2.38 -0.02 1.87 16 42 H 0.07 2.67 6.49 -2.39 -0.02 2.65 16 43 H 0.06 2.60 7.00 -2.39 -0.02 2.59 16 Total: -1.00 -74.89 336.57 4.42 -70.47 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.00 Total: 9.89 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 7.33 Total: 17.22 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -5.87 Total: -121.21 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.06 Total: -25.02 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -74.89 4.42 -70.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027303671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.858 kcal (2) G-P(sol) polarization free energy of solvation -74.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds