Wall clock time and date at job start Tue Mar 31 2020 07:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36930 * 119.99720 * 2 1 4 4 H 1.08004 * 120.00180 * 187.35830 * 3 2 1 5 5 C 1.38809 * 120.00520 * 7.35815 * 3 2 1 6 6 N 1.31626 * 119.99757 * 24.93601 * 5 3 2 7 7 Si 1.86797 * 120.00566 * 204.93763 * 5 3 2 8 8 H 1.48506 * 109.47218 * 94.99326 * 7 5 3 9 9 H 1.48498 * 109.47447 * 214.99967 * 7 5 3 10 10 H 1.48504 * 109.46955 * 334.99756 * 7 5 3 11 11 C 1.46495 * 119.99827 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.52144 * 179.91865 * 11 2 1 13 13 C 1.53036 * 109.49997 * 59.83983 * 11 2 1 14 14 C 1.53046 * 109.54032 * 178.68561 * 13 11 2 15 15 C 1.53184 * 109.31615 * 61.35799 * 14 13 11 16 16 N 1.46926 * 108.77561 * 305.37111 * 15 14 13 17 17 C 1.34784 * 120.63069 * 233.88016 * 16 15 14 18 18 O 1.21623 * 120.00179 * 173.16852 * 17 16 15 19 19 C 1.47260 * 119.99647 * 353.17232 * 17 16 15 20 20 C 1.46684 * 126.94637 * 330.09459 * 19 17 16 21 21 C 1.34492 * 106.33531 * 179.97438 * 20 19 17 22 22 N 1.36448 * 108.85594 * 0.02562 * 21 20 19 23 23 C 1.46494 * 124.85267 * 179.97438 * 22 21 20 24 24 C 1.34662 * 110.29583 * 359.74577 * 22 21 20 25 25 C 1.46922 * 118.74276 * 53.60871 * 16 15 14 26 26 H 1.09007 * 109.46690 * 275.10616 * 1 2 3 27 27 H 1.08999 * 109.47607 * 35.10734 * 1 2 3 28 28 H 1.08998 * 109.47098 * 155.10951 * 1 2 3 29 29 H 0.97005 * 119.99934 * 180.02562 * 6 5 3 30 30 H 1.09002 * 109.45932 * 298.69987 * 13 11 2 31 31 H 1.08995 * 109.46542 * 58.65916 * 13 11 2 32 32 H 1.08999 * 109.50062 * 181.31590 * 14 13 11 33 33 H 1.09006 * 109.49072 * 301.40517 * 14 13 11 34 34 H 1.08996 * 109.58770 * 185.58237 * 15 14 13 35 35 H 1.09000 * 109.58543 * 65.15304 * 15 14 13 36 36 H 1.08001 * 126.83534 * 359.95600 * 20 19 17 37 37 H 1.07999 * 125.56880 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.47172 * 90.01822 * 23 22 21 39 39 H 1.08994 * 109.47460 * 210.02280 * 23 22 21 40 40 H 1.09008 * 109.46706 * 330.02530 * 23 22 21 41 41 H 1.07999 * 125.80093 * 180.30028 * 24 22 21 42 42 H 1.08994 * 109.58961 * 66.17714 * 25 16 15 43 43 H 1.08998 * 109.59140 * 186.46716 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2230 1.1898 -0.1198 5 6 1.4642 2.3831 0.1539 6 7 0.3010 2.4010 0.7698 7 14 2.1924 3.9688 -0.5128 8 1 1.6409 4.2364 -1.8655 9 1 1.8460 5.0924 0.3942 10 1 3.6692 3.8381 -0.5974 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0705 -0.0019 13 6 1.8252 -2.0729 -1.2482 14 6 2.6145 -3.3841 -1.2665 15 6 2.2496 -4.2123 -0.0306 16 7 2.4683 -3.3930 1.1692 17 6 3.2460 -3.8413 2.1746 18 8 3.5206 -3.1074 3.1048 19 6 3.7634 -5.2197 2.1467 20 6 3.1267 -6.3881 1.5293 21 6 3.9514 -7.4278 1.7476 22 7 5.0377 -6.9896 2.4474 23 6 6.1561 -7.8347 2.8728 24 6 4.9372 -5.6682 2.6868 25 6 1.8279 -2.0731 1.2497 26 1 -0.3633 0.0915 1.0237 27 1 -0.3634 0.8407 -0.5910 28 1 -0.3633 -0.9322 -0.4325 29 1 -0.1782 3.2375 0.8771 30 1 0.7575 -2.2921 -1.2338 31 1 2.0645 -1.4926 -2.1392 32 1 2.3663 -3.9456 -2.1671 33 1 3.6824 -3.1659 -1.2560 34 1 2.8803 -5.1002 0.0134 35 1 1.2019 -4.5080 -0.0851 36 1 2.1831 -6.4093 1.0042 37 1 3.7816 -8.4435 1.4221 38 1 6.9210 -7.8433 2.0963 39 1 6.5799 -7.4392 3.7958 40 1 5.7996 -8.8507 3.0427 41 1 5.6599 -5.0654 3.2166 42 1 0.7459 -2.1943 1.2996 43 1 2.1784 -1.5505 2.1397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027366312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:34 Heat of formation + Delta-G solvation = 55.326552 kcal Electronic energy + Delta-G solvation = -23714.352617 eV Core-core repulsion = 20375.888547 eV Total energy + Delta-G solvation = -3338.464070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36112 -39.35193 -37.13924 -35.00553 -33.09673 -32.03740 -31.15952 -29.32268 -28.79012 -26.83336 -25.95944 -25.02805 -23.44183 -21.98545 -21.28290 -20.42596 -19.23296 -18.59243 -17.29348 -16.65331 -16.05822 -15.57231 -15.30319 -14.94218 -14.47837 -14.22884 -13.93718 -13.62143 -13.46826 -13.31603 -13.11758 -12.69790 -12.66556 -12.50518 -12.32247 -12.15189 -11.97350 -11.79756 -11.00562 -10.96645 -10.72568 -10.47309 -10.30461 -10.22540 -10.05963 -9.71560 -9.69661 -9.44001 -8.63044 -8.47820 -8.39104 -8.06042 -6.82179 -5.69104 -2.97226 1.89439 2.34128 2.66109 3.43968 3.47145 3.53804 3.55332 3.72816 4.43003 4.58601 4.73680 4.77705 4.89132 5.02819 5.08556 5.16847 5.32516 5.39436 5.43353 5.54340 5.66579 5.74272 5.79345 5.88290 5.96779 6.05793 6.14536 6.26584 6.34540 6.49801 6.60409 6.65662 6.78856 6.88473 6.93714 7.03901 7.08145 7.13763 7.51012 7.73532 7.91683 7.92934 8.40648 8.68658 9.29340 9.95771 10.40308 11.38324 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029509 B = 0.003565 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.641233 B = 7852.046033 C = 8175.650258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.595 5.595 3 C -0.252 4.252 4 H 0.074 0.926 5 C -0.001 4.001 6 N -0.902 5.902 7 Si 0.896 3.104 8 H -0.290 1.290 9 H -0.294 1.294 10 H -0.280 1.280 11 C 0.171 3.829 12 H 0.064 0.936 13 C -0.133 4.133 14 C -0.131 4.131 15 C 0.099 3.901 16 N -0.601 5.601 17 C 0.585 3.415 18 O -0.552 6.552 19 C -0.220 4.220 20 C -0.171 4.171 21 C -0.021 4.021 22 N -0.451 5.451 23 C 0.070 3.930 24 C 0.063 3.937 25 C 0.099 3.901 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.000 1.000 29 H 0.251 0.749 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.149 0.851 37 H 0.165 0.835 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.172 0.828 42 H 0.059 0.941 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.760 -23.717 -0.919 24.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.317 5.317 3 C -0.381 4.381 4 H 0.092 0.908 5 C -0.199 4.199 6 N -0.548 5.548 7 Si 0.727 3.273 8 H -0.217 1.217 9 H -0.220 1.220 10 H -0.205 1.205 11 C 0.061 3.939 12 H 0.082 0.918 13 C -0.172 4.172 14 C -0.170 4.170 15 C -0.024 4.024 16 N -0.333 5.333 17 C 0.374 3.626 18 O -0.431 6.431 19 C -0.230 4.230 20 C -0.195 4.195 21 C -0.147 4.147 22 N -0.127 5.127 23 C -0.071 4.071 24 C -0.071 4.071 25 C -0.025 4.025 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.019 0.981 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.167 0.833 37 H 0.182 0.818 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.189 0.811 42 H 0.078 0.922 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.037 -23.374 -0.287 24.718 hybrid contribution 0.215 0.857 -0.348 0.950 sum 8.252 -22.517 -0.635 23.990 Atomic orbital electron populations 1.20874 0.82401 0.96067 0.99202 1.44081 1.02018 1.00189 1.85402 1.19309 0.91985 0.83330 1.43450 0.90787 1.24720 0.97376 0.97533 1.00270 1.70231 1.16648 1.25621 1.42279 0.86334 0.78541 0.83618 0.78847 1.21691 1.22039 1.20545 1.20562 0.96332 0.85939 0.91037 0.91777 1.22086 0.99607 0.95085 1.00455 1.21915 1.00911 0.97196 0.96960 1.22098 1.01160 0.94624 0.84534 1.48014 1.48829 1.18827 1.17667 1.17464 0.77802 0.85428 0.81865 1.90773 1.59001 1.57870 1.35456 1.20446 0.98539 0.93880 1.10120 1.22162 1.01016 0.91290 1.05077 1.21733 0.89487 0.99827 1.03660 1.43572 1.17906 1.07763 1.43435 1.22084 0.88348 0.95254 1.01450 1.21737 0.99401 0.83510 1.02484 1.22483 0.96532 0.81342 1.02167 0.96155 0.92638 0.98107 0.93842 0.92337 0.91796 0.91483 0.91919 0.88525 0.92069 0.83297 0.81758 0.90781 0.89688 0.89741 0.81098 0.92221 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 7.99 59.85 0.48 4.47 16 2 N -0.60 -15.28 2.82 -173.35 -0.49 -15.77 16 3 C -0.25 -7.16 9.69 -15.06 -0.15 -7.30 16 4 H 0.07 2.08 7.78 -52.48 -0.41 1.67 16 5 C 0.00 -0.04 4.93 -17.43 -0.09 -0.12 16 6 N -0.90 -26.98 10.61 55.49 0.59 -26.39 16 7 Si 0.90 22.46 29.62 -169.99 -5.04 17.43 16 8 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 9 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.17 3.65 2.74 -67.81 -0.19 3.46 16 12 H 0.06 1.46 7.79 -51.93 -0.40 1.05 16 13 C -0.13 -2.31 5.13 -26.69 -0.14 -2.45 16 14 C -0.13 -1.79 6.08 -26.61 -0.16 -1.96 16 15 C 0.10 1.32 5.30 -3.71 -0.02 1.30 16 16 N -0.60 -10.42 2.97 -174.11 -0.52 -10.93 16 17 C 0.59 10.71 7.63 -12.59 -0.10 10.61 16 18 O -0.55 -12.32 16.45 5.26 0.09 -12.23 16 19 C -0.22 -3.14 5.61 -103.35 -0.58 -3.72 16 20 C -0.17 -1.89 8.62 -37.50 -0.32 -2.21 16 21 C -0.02 -0.18 11.34 -16.82 -0.19 -0.37 16 22 N -0.45 -4.00 3.09 -124.53 -0.38 -4.39 16 23 C 0.07 0.32 11.03 59.84 0.66 0.98 16 24 C 0.06 0.75 11.23 -16.84 -0.19 0.56 16 25 C 0.10 2.03 5.80 -3.71 -0.02 2.01 16 26 H 0.02 0.55 7.75 -51.93 -0.40 0.15 16 27 H 0.05 1.51 6.59 -51.93 -0.34 1.17 16 28 H 0.00 0.01 6.45 -51.93 -0.34 -0.33 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.06 1.01 6.71 -51.93 -0.35 0.66 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.10 1.12 4.25 -51.93 -0.22 0.90 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.15 1.43 6.75 -52.49 -0.35 1.07 16 37 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.31 8.13 -51.93 -0.42 -0.11 16 40 H 0.08 0.23 8.13 -51.92 -0.42 -0.19 16 41 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 42 H 0.06 1.22 7.51 -51.93 -0.39 0.83 16 43 H 0.09 2.16 7.00 -51.93 -0.36 1.80 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -34.91 339.99 -8.13 -43.04 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.51 Total: -1.13 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -1.00 Total: 5.25 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.80 Total: -57.48 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.04 Total: 17.43 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.91 -8.13 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027366312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.367 kcal (2) G-P(sol) polarization free energy of solvation -34.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds