Wall clock time and date at job start Tue Mar 31 2020 07:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36930 * 119.99720 * 2 1 4 4 H 1.08004 * 120.00180 * 187.35830 * 3 2 1 5 5 C 1.38809 * 120.00520 * 7.35815 * 3 2 1 6 6 N 1.31626 * 119.99757 * 24.93601 * 5 3 2 7 7 Si 1.86797 * 120.00566 * 204.93763 * 5 3 2 8 8 H 1.48506 * 109.47218 * 94.99326 * 7 5 3 9 9 H 1.48498 * 109.47447 * 214.99967 * 7 5 3 10 10 H 1.48504 * 109.46955 * 334.99756 * 7 5 3 11 11 C 1.46495 * 119.99827 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.52144 * 179.91865 * 11 2 1 13 13 C 1.53036 * 109.49997 * 59.83983 * 11 2 1 14 14 C 1.53046 * 109.54032 * 178.68561 * 13 11 2 15 15 C 1.53184 * 109.31615 * 61.35799 * 14 13 11 16 16 N 1.46926 * 108.77561 * 305.37111 * 15 14 13 17 17 C 1.34784 * 120.63069 * 233.88016 * 16 15 14 18 18 O 1.21623 * 120.00179 * 173.16852 * 17 16 15 19 19 C 1.47260 * 119.99647 * 353.17232 * 17 16 15 20 20 C 1.46684 * 126.94637 * 330.09459 * 19 17 16 21 21 C 1.34492 * 106.33531 * 179.97438 * 20 19 17 22 22 N 1.36448 * 108.85594 * 0.02562 * 21 20 19 23 23 C 1.46494 * 124.85267 * 179.97438 * 22 21 20 24 24 C 1.34662 * 110.29583 * 359.74577 * 22 21 20 25 25 C 1.46922 * 118.74276 * 53.60871 * 16 15 14 26 26 H 1.09007 * 109.46690 * 275.10616 * 1 2 3 27 27 H 1.08999 * 109.47607 * 35.10734 * 1 2 3 28 28 H 1.08998 * 109.47098 * 155.10951 * 1 2 3 29 29 H 0.97005 * 119.99934 * 180.02562 * 6 5 3 30 30 H 1.09002 * 109.45932 * 298.69987 * 13 11 2 31 31 H 1.08995 * 109.46542 * 58.65916 * 13 11 2 32 32 H 1.08999 * 109.50062 * 181.31590 * 14 13 11 33 33 H 1.09006 * 109.49072 * 301.40517 * 14 13 11 34 34 H 1.08996 * 109.58770 * 185.58237 * 15 14 13 35 35 H 1.09000 * 109.58543 * 65.15304 * 15 14 13 36 36 H 1.08001 * 126.83534 * 359.95600 * 20 19 17 37 37 H 1.07999 * 125.56880 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.47172 * 90.01822 * 23 22 21 39 39 H 1.08994 * 109.47460 * 210.02280 * 23 22 21 40 40 H 1.09008 * 109.46706 * 330.02530 * 23 22 21 41 41 H 1.07999 * 125.80093 * 180.30028 * 24 22 21 42 42 H 1.08994 * 109.58961 * 66.17714 * 25 16 15 43 43 H 1.08998 * 109.59140 * 186.46716 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2230 1.1898 -0.1198 5 6 1.4642 2.3831 0.1539 6 7 0.3010 2.4010 0.7698 7 14 2.1924 3.9688 -0.5128 8 1 1.6409 4.2364 -1.8655 9 1 1.8460 5.0924 0.3942 10 1 3.6692 3.8381 -0.5974 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0705 -0.0019 13 6 1.8252 -2.0729 -1.2482 14 6 2.6145 -3.3841 -1.2665 15 6 2.2496 -4.2123 -0.0306 16 7 2.4683 -3.3930 1.1692 17 6 3.2460 -3.8413 2.1746 18 8 3.5206 -3.1074 3.1048 19 6 3.7634 -5.2197 2.1467 20 6 3.1267 -6.3881 1.5293 21 6 3.9514 -7.4278 1.7476 22 7 5.0377 -6.9896 2.4474 23 6 6.1561 -7.8347 2.8728 24 6 4.9372 -5.6682 2.6868 25 6 1.8279 -2.0731 1.2497 26 1 -0.3633 0.0915 1.0237 27 1 -0.3634 0.8407 -0.5910 28 1 -0.3633 -0.9322 -0.4325 29 1 -0.1782 3.2375 0.8771 30 1 0.7575 -2.2921 -1.2338 31 1 2.0645 -1.4926 -2.1392 32 1 2.3663 -3.9456 -2.1671 33 1 3.6824 -3.1659 -1.2560 34 1 2.8803 -5.1002 0.0134 35 1 1.2019 -4.5080 -0.0851 36 1 2.1831 -6.4093 1.0042 37 1 3.7816 -8.4435 1.4221 38 1 6.9210 -7.8433 2.0963 39 1 6.5799 -7.4392 3.7958 40 1 5.7996 -8.8507 3.0427 41 1 5.6599 -5.0654 3.2166 42 1 0.7459 -2.1943 1.2996 43 1 2.1784 -1.5505 2.1397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027366312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:34 Heat of formation + Delta-G solvation = 33.043671 kcal Electronic energy + Delta-G solvation = -23715.318876 eV Core-core repulsion = 20375.888547 eV Total energy + Delta-G solvation = -3339.430328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.20894 -40.71605 -38.74801 -36.77544 -34.23032 -33.38397 -32.80199 -30.57656 -30.05588 -28.09400 -27.64691 -26.27158 -25.20993 -23.22955 -22.68851 -21.25472 -20.64065 -19.82239 -18.84713 -18.23097 -17.36374 -16.94898 -16.47897 -16.29869 -15.82895 -15.66493 -15.28706 -15.11755 -14.84673 -14.49404 -14.38894 -13.99170 -13.94498 -13.68199 -13.50011 -13.25818 -13.06061 -12.96112 -12.90406 -12.78238 -12.42674 -12.19474 -12.09242 -12.01152 -11.69340 -11.57012 -11.41969 -10.88195 -10.55730 -9.71854 -9.38029 -9.23304 -8.89384 -7.88855 -5.19440 0.85671 1.45135 1.46269 1.56076 1.56672 1.89950 2.23981 2.47302 2.53378 3.22159 3.62396 3.80042 4.00496 4.04982 4.10605 4.15686 4.21336 4.24693 4.37451 4.38992 4.51575 4.63857 4.65336 4.72460 4.78930 4.79716 4.92874 4.96940 5.06279 5.08814 5.11255 5.19738 5.29781 5.44014 5.53347 5.56433 5.64333 5.71590 5.80195 6.11819 6.25856 6.41393 6.60619 7.11333 7.29612 7.86354 8.25728 9.17166 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029509 B = 0.003565 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.641233 B = 7852.046033 C = 8175.650258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.611 5.611 3 C -0.266 4.266 4 H 0.069 0.931 5 C -0.054 4.054 6 N -0.934 5.934 7 Si 0.965 3.035 8 H -0.283 1.283 9 H -0.296 1.296 10 H -0.272 1.272 11 C 0.169 3.831 12 H 0.041 0.959 13 C -0.121 4.121 14 C -0.122 4.122 15 C 0.097 3.903 16 N -0.601 5.601 17 C 0.576 3.424 18 O -0.611 6.611 19 C -0.257 4.257 20 C -0.187 4.187 21 C 0.000 4.000 22 N -0.443 5.443 23 C 0.062 3.938 24 C 0.058 3.942 25 C 0.113 3.887 26 H -0.010 1.010 27 H 0.030 0.970 28 H 0.038 0.962 29 H 0.249 0.751 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.055 0.945 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.164 0.836 37 H 0.208 0.792 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.170 0.830 42 H 0.060 0.940 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.648 -27.463 -2.798 28.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.334 5.334 3 C -0.396 4.396 4 H 0.087 0.913 5 C -0.249 4.249 6 N -0.581 5.581 7 Si 0.793 3.207 8 H -0.210 1.210 9 H -0.223 1.223 10 H -0.197 1.197 11 C 0.061 3.939 12 H 0.059 0.941 13 C -0.161 4.161 14 C -0.160 4.160 15 C -0.024 4.024 16 N -0.332 5.332 17 C 0.368 3.632 18 O -0.494 6.494 19 C -0.267 4.267 20 C -0.210 4.210 21 C -0.127 4.127 22 N -0.117 5.117 23 C -0.078 4.078 24 C -0.079 4.079 25 C -0.012 4.012 26 H 0.008 0.992 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.100 0.900 36 H 0.181 0.819 37 H 0.225 0.775 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.129 0.871 41 H 0.187 0.813 42 H 0.078 0.922 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.952 -27.199 -2.208 28.720 hybrid contribution 0.029 1.890 0.306 1.915 sum 8.981 -25.309 -1.902 26.923 Atomic orbital electron populations 1.20591 0.82228 0.96799 0.97159 1.44319 1.02388 1.01040 1.85606 1.19589 0.92111 0.84846 1.43069 0.91325 1.25502 0.98154 1.00599 1.00633 1.70376 1.18060 1.26150 1.43492 0.85279 0.78123 0.79358 0.77946 1.20957 1.22334 1.19687 1.20726 0.94617 0.85129 0.93415 0.94099 1.21922 1.00613 0.96257 0.97264 1.21900 0.99776 0.95428 0.98929 1.22441 1.03101 0.94641 0.82245 1.48070 1.48289 1.17709 1.19124 1.18220 0.77052 0.86898 0.80986 1.90724 1.61194 1.59880 1.37652 1.20254 1.00526 0.92447 1.13510 1.22326 1.02187 0.90464 1.06009 1.22377 0.88044 1.00945 1.01315 1.43895 1.18854 1.06842 1.42100 1.22441 0.87448 0.95683 1.02243 1.21771 0.98859 0.85168 1.02091 1.21973 0.96409 0.83120 0.99694 0.99179 0.95114 0.94411 0.94171 0.91595 0.92441 0.87272 0.92642 0.85951 0.89954 0.81894 0.77501 0.89283 0.89103 0.87120 0.81258 0.92183 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.13 7.99 127.77 1.02 10.15 16 2 N -0.61 -32.51 2.82 -702.35 -1.98 -34.49 16 3 C -0.27 -15.69 9.69 84.03 0.81 -14.88 16 4 H 0.07 4.01 7.78 -2.91 -0.02 3.99 16 5 C -0.05 -3.19 4.93 84.86 0.42 -2.78 16 6 N -0.93 -57.85 10.61 21.65 0.23 -57.62 16 7 Si 0.96 47.37 29.62 68.60 2.03 49.40 16 8 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 9 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 11 C 0.17 7.45 2.74 45.07 0.12 7.58 16 12 H 0.04 1.96 7.79 -2.39 -0.02 1.94 16 13 C -0.12 -4.06 5.13 30.62 0.16 -3.91 16 14 C -0.12 -2.99 6.08 30.67 0.19 -2.80 16 15 C 0.10 2.33 5.30 86.36 0.46 2.79 16 16 N -0.60 -21.11 2.97 -822.99 -2.45 -23.55 16 17 C 0.58 21.92 7.63 86.61 0.66 22.58 16 18 O -0.61 -29.39 16.45 -4.10 -0.07 -29.45 16 19 C -0.26 -7.17 5.61 -19.04 -0.11 -7.28 16 20 C -0.19 -3.54 8.62 23.62 0.20 -3.34 16 21 C 0.00 0.00 11.34 83.12 0.94 0.95 16 22 N -0.44 -6.39 3.09 -547.89 -1.69 -8.08 16 23 C 0.06 0.31 11.03 127.77 1.41 1.72 16 24 C 0.06 1.32 11.23 83.92 0.94 2.26 16 25 C 0.11 4.90 5.80 86.36 0.50 5.40 16 26 H -0.01 -0.58 7.75 -2.38 -0.02 -0.60 16 27 H 0.03 1.71 6.59 -2.39 -0.02 1.69 16 28 H 0.04 1.63 6.45 -2.39 -0.02 1.61 16 29 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 30 H 0.07 2.12 6.71 -2.39 -0.02 2.10 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.11 1.88 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.12 2.42 4.25 -2.39 -0.01 2.41 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.16 2.50 6.75 -2.91 -0.02 2.48 16 37 H 0.21 0.89 8.06 -2.91 -0.02 0.86 16 38 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.09 0.39 8.13 -2.39 -0.02 0.37 16 40 H 0.11 0.04 8.13 -2.38 -0.02 0.02 16 41 H 0.17 3.76 8.06 -2.91 -0.02 3.73 16 42 H 0.06 2.55 7.51 -2.39 -0.02 2.53 16 43 H 0.04 2.23 7.00 -2.39 -0.02 2.21 16 Total: -1.00 -82.30 339.99 4.80 -77.50 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.00 Total: 7.84 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 7.73 Total: 18.45 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -5.89 Total: -123.74 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.07 Total: -29.45 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -82.30 4.80 -77.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027366312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.542 kcal (2) G-P(sol) polarization free energy of solvation -82.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds