Wall clock time and date at job start Tue Mar 31 2020 07:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36942 * 119.99892 * 2 1 4 4 H 1.07997 * 119.99939 * 204.75858 * 3 2 1 5 5 C 1.38809 * 119.99667 * 24.76431 * 3 2 1 6 6 N 1.31618 * 120.00512 * 6.35522 * 5 3 2 7 7 Si 1.86803 * 119.99877 * 186.35723 * 5 3 2 8 8 H 1.48497 * 109.47211 * 89.99682 * 7 5 3 9 9 H 1.48496 * 109.46986 * 209.99824 * 7 5 3 10 10 H 1.48502 * 109.46699 * 329.99889 * 7 5 3 11 11 C 1.46507 * 120.00205 * 180.02562 * 2 1 3 12 12 H 1.08998 * 109.49418 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.49563 * 300.15963 * 11 2 1 14 14 C 1.53038 * 109.53847 * 181.31829 * 13 11 2 15 15 C 1.53627 * 109.23788 * 298.51264 * 14 13 11 16 16 N 1.46923 * 108.54689 * 54.85728 * 15 14 13 17 17 C 1.34776 * 120.63218 * 126.36963 * 16 15 14 18 18 O 1.21632 * 119.99596 * 185.84349 * 17 16 15 19 19 C 1.47260 * 119.99865 * 5.83863 * 17 16 15 20 20 C 1.46685 * 126.94502 * 28.07800 * 19 17 16 21 21 C 1.34482 * 106.33369 * 179.73247 * 20 19 17 22 22 N 1.36451 * 108.85778 * 359.97438 * 21 20 19 23 23 C 1.46495 * 124.84926 * 179.97438 * 22 21 20 24 24 C 1.34656 * 110.29867 * 0.02562 * 22 21 20 25 25 C 1.46931 * 118.73529 * 306.09104 * 16 15 14 26 26 H 1.09002 * 109.47021 * 275.09115 * 1 2 3 27 27 H 1.08998 * 109.47420 * 35.09269 * 1 2 3 28 28 H 1.09005 * 109.47317 * 155.09165 * 1 2 3 29 29 H 0.96999 * 120.00338 * 180.02562 * 6 5 3 30 30 H 1.09006 * 109.46122 * 301.33602 * 13 11 2 31 31 H 1.09004 * 109.46182 * 61.29641 * 13 11 2 32 32 H 1.08995 * 109.49629 * 58.58167 * 14 13 11 33 33 H 1.08990 * 109.50157 * 178.65394 * 14 13 11 34 34 H 1.09002 * 109.73986 * 295.11159 * 15 14 13 35 35 H 1.09005 * 109.66091 * 174.54956 * 15 14 13 36 36 H 1.08003 * 126.83321 * 359.71327 * 20 19 17 37 37 H 1.07999 * 125.57332 * 179.97438 * 21 20 19 38 38 H 1.09004 * 109.46887 * 89.97920 * 23 22 21 39 39 H 1.08997 * 109.46978 * 209.97397 * 23 22 21 40 40 H 1.08993 * 109.47401 * 329.98005 * 23 22 21 41 41 H 1.07997 * 125.80317 * 180.02562 * 24 22 21 42 42 H 1.09000 * 109.58322 * 173.64943 * 25 16 15 43 43 H 1.09004 * 109.58718 * 294.07530 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1552 1.2290 -0.3917 5 6 1.5512 2.3328 0.5036 6 7 0.3774 2.2576 1.0941 7 14 2.4120 3.9829 0.3430 8 1 2.0073 4.6304 -0.9306 9 1 2.0304 4.8533 1.4840 10 1 3.8826 3.7765 0.3480 11 6 2.1975 -1.2688 -0.0006 12 1 3.2692 -1.0700 0.0000 13 6 1.8252 -2.0741 1.2464 14 6 2.6146 -3.3850 1.2636 15 6 2.2451 -4.2146 0.0245 16 7 2.4683 -3.3920 -1.1722 17 6 3.2411 -3.8420 -2.1805 18 8 3.5051 -3.1119 -3.1168 19 6 3.7660 -5.2175 -2.1485 20 6 3.1583 -6.3779 -1.4882 21 6 3.9762 -7.4189 -1.7248 22 7 5.0317 -6.9889 -2.4751 23 6 6.1345 -7.8378 -2.9326 24 6 4.9153 -5.6726 -2.7339 25 6 1.8278 -2.0720 -1.2515 26 1 -0.3633 0.0912 1.0236 27 1 -0.3634 0.8408 -0.5908 28 1 -0.3634 -0.9321 -0.4328 29 1 -0.0409 3.0590 1.4457 30 1 2.0647 -1.4944 2.1380 31 1 0.7576 -2.2932 1.2319 32 1 3.6824 -3.1669 1.2532 33 1 2.3669 -3.9471 2.1639 34 1 1.1964 -4.5071 0.0766 35 1 2.8729 -5.1046 -0.0216 36 1 2.2375 -6.3931 -0.9241 37 1 3.8228 -8.4300 -1.3776 38 1 5.8856 -8.2644 -3.9043 39 1 7.0413 -7.2395 -3.0201 40 1 6.2970 -8.6410 -2.2140 41 1 5.6109 -5.0775 -3.3069 42 1 2.1802 -1.5478 -2.1398 43 1 0.7457 -2.1933 -1.3013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027366313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:39 Heat of formation + Delta-G solvation = 53.525104 kcal Electronic energy + Delta-G solvation = -23706.399925 eV Core-core repulsion = 20367.857738 eV Total energy + Delta-G solvation = -3338.542187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38037 -39.35618 -37.11259 -34.96656 -33.10712 -31.99029 -31.15399 -29.32874 -28.79197 -26.83246 -25.91464 -25.02876 -23.43317 -21.96605 -21.26529 -20.45864 -19.23463 -18.58924 -17.28200 -16.62906 -16.08000 -15.57324 -15.38241 -14.88256 -14.51569 -14.23823 -13.87981 -13.64476 -13.42488 -13.31676 -13.10641 -12.71977 -12.65000 -12.46833 -12.32712 -12.13230 -11.98641 -11.79803 -10.87878 -10.85277 -10.71556 -10.50634 -10.28161 -10.17357 -10.00096 -9.79931 -9.67700 -9.45614 -8.64222 -8.51925 -8.45005 -8.09014 -6.63723 -5.63502 -3.12145 1.87233 2.32288 2.64903 3.43739 3.45043 3.50522 3.52882 3.71610 4.42045 4.56916 4.72729 4.76845 4.87512 5.02026 5.08270 5.19688 5.37031 5.38501 5.49301 5.58804 5.68659 5.74356 5.82267 5.86572 5.99668 6.04741 6.17277 6.32805 6.37403 6.53815 6.62092 6.67013 6.81494 6.88257 6.98721 7.06572 7.10228 7.14853 7.50627 7.84451 7.90240 7.90806 8.49622 8.66059 9.33471 9.95124 10.44560 11.40628 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029596 B = 0.003571 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.833115 B = 7839.194954 C = 8275.957485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.594 5.594 3 C -0.251 4.251 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.911 5.911 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.131 4.131 14 C -0.132 4.132 15 C 0.096 3.904 16 N -0.599 5.599 17 C 0.586 3.414 18 O -0.555 6.555 19 C -0.221 4.221 20 C -0.173 4.173 21 C -0.020 4.020 22 N -0.451 5.451 23 C 0.070 3.930 24 C 0.064 3.936 25 C 0.098 3.902 26 H 0.030 0.970 27 H 0.043 0.957 28 H -0.004 1.004 29 H 0.251 0.749 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.172 0.828 42 H 0.088 0.912 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.727 -23.254 -3.222 24.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.316 5.316 3 C -0.381 4.381 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.556 5.556 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.061 3.939 12 H 0.082 0.918 13 C -0.171 4.171 14 C -0.171 4.171 15 C -0.027 4.027 16 N -0.331 5.331 17 C 0.376 3.624 18 O -0.434 6.434 19 C -0.231 4.231 20 C -0.197 4.197 21 C -0.147 4.147 22 N -0.127 5.127 23 C -0.071 4.071 24 C -0.070 4.070 25 C -0.026 4.026 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.015 0.985 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.169 0.831 37 H 0.183 0.817 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.189 0.811 42 H 0.107 0.893 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.001 -22.915 -3.739 24.558 hybrid contribution 0.275 0.894 0.121 0.943 sum 8.276 -22.021 -3.618 23.801 Atomic orbital electron populations 1.20801 0.82630 0.95241 0.99383 1.43875 1.01832 1.00041 1.85884 1.19261 0.99147 0.85950 1.33729 0.91459 1.25076 0.97449 0.98599 0.98415 1.70055 1.16429 1.27371 1.41754 0.86228 0.79088 0.83990 0.77096 1.21506 1.21772 1.20510 1.20585 0.96359 0.86164 0.90820 0.91805 1.22106 0.99364 0.94816 1.00804 1.22009 1.00918 0.97346 0.96782 1.22290 1.01164 0.94695 0.84570 1.47934 1.48917 1.18563 1.17732 1.17437 0.77765 0.85386 0.81857 1.90762 1.59481 1.58024 1.35162 1.20429 0.99462 0.93982 1.09194 1.22207 1.01413 0.91364 1.04677 1.21745 0.90526 0.99890 1.02516 1.43579 1.19597 1.08106 1.41373 1.22086 0.88726 0.95274 1.01059 1.21737 0.99631 0.83606 1.02042 1.22376 0.96619 0.81642 1.01930 0.95172 0.93853 0.98544 0.93858 0.91710 0.92568 0.91948 0.91601 0.92016 0.88287 0.83121 0.81735 0.90789 0.89677 0.89713 0.81074 0.89324 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.13 8.00 59.84 0.48 4.61 16 2 N -0.59 -15.37 2.82 -173.35 -0.49 -15.86 16 3 C -0.25 -7.16 9.59 -15.06 -0.14 -7.30 16 4 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 5 C 0.00 0.07 5.23 -17.43 -0.09 -0.02 16 6 N -0.91 -27.00 10.47 55.49 0.58 -26.42 16 7 Si 0.91 22.56 29.56 -169.99 -5.02 17.53 16 8 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 9 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.17 3.68 2.74 -67.81 -0.19 3.49 16 12 H 0.06 1.47 7.88 -51.93 -0.41 1.06 16 13 C -0.13 -2.43 5.14 -26.69 -0.14 -2.57 16 14 C -0.13 -1.89 6.10 -26.39 -0.16 -2.06 16 15 C 0.10 1.29 5.31 -3.49 -0.02 1.27 16 16 N -0.60 -10.26 2.97 -173.82 -0.52 -10.78 16 17 C 0.59 10.51 7.64 -12.59 -0.10 10.42 16 18 O -0.55 -12.01 16.44 5.25 0.09 -11.93 16 19 C -0.22 -3.10 5.69 -103.35 -0.59 -3.69 16 20 C -0.17 -1.88 8.63 -37.50 -0.32 -2.21 16 21 C -0.02 -0.18 11.34 -16.82 -0.19 -0.37 16 22 N -0.45 -3.95 3.09 -124.53 -0.38 -4.33 16 23 C 0.07 0.31 11.03 59.84 0.66 0.97 16 24 C 0.06 0.75 11.22 -16.84 -0.19 0.56 16 25 C 0.10 1.96 5.79 -3.71 -0.02 1.94 16 26 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 27 H 0.04 1.18 7.27 -51.93 -0.38 0.80 16 28 H 0.00 -0.09 6.36 -51.93 -0.33 -0.42 16 29 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.04 7.71 -51.93 -0.40 0.64 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.16 4.04 -51.93 -0.21 0.95 16 36 H 0.15 1.43 6.53 -52.48 -0.34 1.09 16 37 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.29 8.13 -51.93 -0.42 -0.13 16 40 H 0.08 0.22 8.13 -51.93 -0.42 -0.20 16 41 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.09 2.00 7.00 -51.93 -0.36 1.64 16 43 H 0.06 1.21 6.50 -51.93 -0.34 0.88 16 LS Contribution 339.95 15.07 5.12 5.12 Total: -1.00 -34.63 339.95 -8.13 -42.76 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.50 Total: -1.14 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.01 Total: 5.05 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.81 Total: -57.39 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.63 -8.13 -42.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027366313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.284 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds