Wall clock time and date at job start Tue Mar 31 2020 07:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36942 * 119.99892 * 2 1 4 4 H 1.07997 * 119.99939 * 204.75858 * 3 2 1 5 5 C 1.38809 * 119.99667 * 24.76431 * 3 2 1 6 6 N 1.31618 * 120.00512 * 6.35522 * 5 3 2 7 7 Si 1.86803 * 119.99877 * 186.35723 * 5 3 2 8 8 H 1.48497 * 109.47211 * 89.99682 * 7 5 3 9 9 H 1.48496 * 109.46986 * 209.99824 * 7 5 3 10 10 H 1.48502 * 109.46699 * 329.99889 * 7 5 3 11 11 C 1.46507 * 120.00205 * 180.02562 * 2 1 3 12 12 H 1.08998 * 109.49418 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.49563 * 300.15963 * 11 2 1 14 14 C 1.53038 * 109.53847 * 181.31829 * 13 11 2 15 15 C 1.53627 * 109.23788 * 298.51264 * 14 13 11 16 16 N 1.46923 * 108.54689 * 54.85728 * 15 14 13 17 17 C 1.34776 * 120.63218 * 126.36963 * 16 15 14 18 18 O 1.21632 * 119.99596 * 185.84349 * 17 16 15 19 19 C 1.47260 * 119.99865 * 5.83863 * 17 16 15 20 20 C 1.46685 * 126.94502 * 28.07800 * 19 17 16 21 21 C 1.34482 * 106.33369 * 179.73247 * 20 19 17 22 22 N 1.36451 * 108.85778 * 359.97438 * 21 20 19 23 23 C 1.46495 * 124.84926 * 179.97438 * 22 21 20 24 24 C 1.34656 * 110.29867 * 0.02562 * 22 21 20 25 25 C 1.46931 * 118.73529 * 306.09104 * 16 15 14 26 26 H 1.09002 * 109.47021 * 275.09115 * 1 2 3 27 27 H 1.08998 * 109.47420 * 35.09269 * 1 2 3 28 28 H 1.09005 * 109.47317 * 155.09165 * 1 2 3 29 29 H 0.96999 * 120.00338 * 180.02562 * 6 5 3 30 30 H 1.09006 * 109.46122 * 301.33602 * 13 11 2 31 31 H 1.09004 * 109.46182 * 61.29641 * 13 11 2 32 32 H 1.08995 * 109.49629 * 58.58167 * 14 13 11 33 33 H 1.08990 * 109.50157 * 178.65394 * 14 13 11 34 34 H 1.09002 * 109.73986 * 295.11159 * 15 14 13 35 35 H 1.09005 * 109.66091 * 174.54956 * 15 14 13 36 36 H 1.08003 * 126.83321 * 359.71327 * 20 19 17 37 37 H 1.07999 * 125.57332 * 179.97438 * 21 20 19 38 38 H 1.09004 * 109.46887 * 89.97920 * 23 22 21 39 39 H 1.08997 * 109.46978 * 209.97397 * 23 22 21 40 40 H 1.08993 * 109.47401 * 329.98005 * 23 22 21 41 41 H 1.07997 * 125.80317 * 180.02562 * 24 22 21 42 42 H 1.09000 * 109.58322 * 173.64943 * 25 16 15 43 43 H 1.09004 * 109.58718 * 294.07530 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1552 1.2290 -0.3917 5 6 1.5512 2.3328 0.5036 6 7 0.3774 2.2576 1.0941 7 14 2.4120 3.9829 0.3430 8 1 2.0073 4.6304 -0.9306 9 1 2.0304 4.8533 1.4840 10 1 3.8826 3.7765 0.3480 11 6 2.1975 -1.2688 -0.0006 12 1 3.2692 -1.0700 0.0000 13 6 1.8252 -2.0741 1.2464 14 6 2.6146 -3.3850 1.2636 15 6 2.2451 -4.2146 0.0245 16 7 2.4683 -3.3920 -1.1722 17 6 3.2411 -3.8420 -2.1805 18 8 3.5051 -3.1119 -3.1168 19 6 3.7660 -5.2175 -2.1485 20 6 3.1583 -6.3779 -1.4882 21 6 3.9762 -7.4189 -1.7248 22 7 5.0317 -6.9889 -2.4751 23 6 6.1345 -7.8378 -2.9326 24 6 4.9153 -5.6726 -2.7339 25 6 1.8278 -2.0720 -1.2515 26 1 -0.3633 0.0912 1.0236 27 1 -0.3634 0.8408 -0.5908 28 1 -0.3634 -0.9321 -0.4328 29 1 -0.0409 3.0590 1.4457 30 1 2.0647 -1.4944 2.1380 31 1 0.7576 -2.2932 1.2319 32 1 3.6824 -3.1669 1.2532 33 1 2.3669 -3.9471 2.1639 34 1 1.1964 -4.5071 0.0766 35 1 2.8729 -5.1046 -0.0216 36 1 2.2375 -6.3931 -0.9241 37 1 3.8228 -8.4300 -1.3776 38 1 5.8856 -8.2644 -3.9043 39 1 7.0413 -7.2395 -3.0201 40 1 6.2970 -8.6410 -2.2140 41 1 5.6109 -5.0775 -3.3069 42 1 2.1802 -1.5478 -2.1398 43 1 0.7457 -2.1933 -1.3013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027366313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:38 Heat of formation + Delta-G solvation = 31.786854 kcal Electronic energy + Delta-G solvation = -23707.342566 eV Core-core repulsion = 20367.857738 eV Total energy + Delta-G solvation = -3339.484828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.20960 -40.70393 -38.71604 -36.73733 -34.21436 -33.36290 -32.82106 -30.55093 -30.06211 -28.06922 -27.63293 -26.27917 -25.20339 -23.21496 -22.68941 -21.28065 -20.62994 -19.82722 -18.84006 -18.19095 -17.38393 -16.97006 -16.45186 -16.29077 -15.85140 -15.64107 -15.31738 -15.06436 -14.81789 -14.48939 -14.44284 -13.95973 -13.90764 -13.65784 -13.52206 -13.21829 -13.03718 -12.91317 -12.80317 -12.80002 -12.46510 -12.27709 -12.05764 -11.93952 -11.76685 -11.58433 -11.38081 -10.87687 -10.66142 -9.72036 -9.37781 -9.22246 -8.72608 -7.83168 -5.34633 0.85690 1.43691 1.45395 1.54272 1.56748 1.90631 2.24511 2.48772 2.52142 3.29171 3.64437 3.80128 4.01643 4.05190 4.11380 4.15333 4.21958 4.24382 4.37618 4.39245 4.51524 4.64436 4.65421 4.76163 4.79272 4.81346 4.91130 4.94668 5.05147 5.09480 5.11012 5.19435 5.30258 5.45453 5.50711 5.59942 5.64827 5.74551 5.80651 6.12400 6.33170 6.41605 6.60773 7.14950 7.30090 7.85447 8.28963 9.18688 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029596 B = 0.003571 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.833115 B = 7839.194954 C = 8275.957485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.611 5.611 3 C -0.268 4.268 4 H 0.059 0.941 5 C -0.047 4.047 6 N -0.935 5.935 7 Si 0.970 3.030 8 H -0.286 1.286 9 H -0.288 1.288 10 H -0.273 1.273 11 C 0.169 3.831 12 H 0.040 0.960 13 C -0.121 4.121 14 C -0.122 4.122 15 C 0.096 3.904 16 N -0.600 5.600 17 C 0.578 3.422 18 O -0.609 6.609 19 C -0.258 4.258 20 C -0.189 4.189 21 C -0.001 4.001 22 N -0.443 5.443 23 C 0.062 3.938 24 C 0.059 3.941 25 C 0.113 3.887 26 H 0.010 0.990 27 H 0.013 0.987 28 H 0.027 0.973 29 H 0.249 0.751 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.165 0.835 37 H 0.207 0.793 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.171 0.829 42 H 0.053 0.947 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.618 -26.849 -2.531 28.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.334 5.334 3 C -0.399 4.399 4 H 0.077 0.923 5 C -0.242 4.242 6 N -0.582 5.582 7 Si 0.798 3.202 8 H -0.213 1.213 9 H -0.214 1.214 10 H -0.198 1.198 11 C 0.062 3.938 12 H 0.058 0.942 13 C -0.160 4.160 14 C -0.160 4.160 15 C -0.025 4.025 16 N -0.331 5.331 17 C 0.371 3.629 18 O -0.492 6.492 19 C -0.268 4.268 20 C -0.212 4.212 21 C -0.128 4.128 22 N -0.117 5.117 23 C -0.078 4.078 24 C -0.077 4.077 25 C -0.011 4.011 26 H 0.028 0.972 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.144 0.856 36 H 0.183 0.817 37 H 0.224 0.776 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.130 0.870 41 H 0.189 0.811 42 H 0.071 0.929 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.915 -26.585 -3.027 28.203 hybrid contribution 0.074 1.892 -0.156 1.900 sum 8.989 -24.693 -3.183 26.470 Atomic orbital electron populations 1.20511 0.82468 0.95515 0.97766 1.44073 1.02187 1.00900 1.86261 1.19491 0.99112 0.87548 1.33712 0.92298 1.25803 0.98229 1.01787 0.98411 1.70209 1.17497 1.27976 1.42476 0.85232 0.78331 0.79743 0.76915 1.21284 1.21414 1.19753 1.20681 0.94556 0.85364 0.93239 0.94211 1.21923 1.00255 0.96251 0.97589 1.21971 0.99661 0.95383 0.99027 1.22593 1.03106 0.94652 0.82169 1.48005 1.48535 1.17549 1.19057 1.18147 0.76996 0.86780 0.81005 1.90716 1.61447 1.59894 1.37167 1.20262 1.01432 0.92672 1.12466 1.22371 1.02608 0.90636 1.05553 1.22380 0.89054 1.00963 1.00371 1.43903 1.20416 1.07243 1.40154 1.22439 0.87589 0.95390 1.02406 1.21789 0.99112 0.85210 1.01631 1.21900 0.96779 0.83130 0.99339 0.97171 0.96776 0.95426 0.94128 0.93926 0.92147 0.92684 0.87816 0.89915 0.85580 0.81726 0.77581 0.89571 0.88912 0.87049 0.81140 0.92858 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.45 8.00 127.77 1.02 10.48 16 2 N -0.61 -32.83 2.82 -702.34 -1.98 -34.81 16 3 C -0.27 -15.88 9.59 84.03 0.81 -15.08 16 4 H 0.06 3.50 7.81 -2.91 -0.02 3.47 16 5 C -0.05 -2.77 5.23 84.86 0.44 -2.32 16 6 N -0.94 -56.90 10.47 21.65 0.23 -56.68 16 7 Si 0.97 47.42 29.56 68.60 2.03 49.45 16 8 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 9 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 11 C 0.17 7.59 2.74 45.07 0.12 7.71 16 12 H 0.04 1.94 7.88 -2.39 -0.02 1.92 16 13 C -0.12 -4.44 5.14 30.62 0.16 -4.28 16 14 C -0.12 -3.24 6.10 30.82 0.19 -3.05 16 15 C 0.10 2.35 5.31 86.51 0.46 2.81 16 16 N -0.60 -20.58 2.97 -822.09 -2.44 -23.02 16 17 C 0.58 21.23 7.64 86.62 0.66 21.89 16 18 O -0.61 -27.91 16.44 -4.13 -0.07 -27.98 16 19 C -0.26 -7.00 5.69 -19.04 -0.11 -7.11 16 20 C -0.19 -3.51 8.63 23.62 0.20 -3.30 16 21 C 0.00 -0.01 11.34 83.11 0.94 0.94 16 22 N -0.44 -6.23 3.09 -547.91 -1.69 -7.92 16 23 C 0.06 0.29 11.03 127.77 1.41 1.70 16 24 C 0.06 1.32 11.22 83.92 0.94 2.26 16 25 C 0.11 4.69 5.79 86.36 0.50 5.19 16 26 H 0.01 0.56 7.34 -2.39 -0.02 0.54 16 27 H 0.01 0.77 7.27 -2.39 -0.02 0.76 16 28 H 0.03 1.23 6.36 -2.38 -0.02 1.21 16 29 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 30 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.06 2.17 7.71 -2.39 -0.02 2.15 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.13 2.52 4.04 -2.38 -0.01 2.51 16 36 H 0.17 2.47 6.53 -2.91 -0.02 2.45 16 37 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.09 0.27 8.14 -2.38 -0.02 0.25 16 39 H 0.09 0.34 8.13 -2.39 -0.02 0.32 16 40 H 0.11 0.00 8.13 -2.39 -0.02 -0.02 16 41 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 42 H 0.05 2.57 7.00 -2.39 -0.02 2.55 16 43 H 0.07 2.64 6.50 -2.38 -0.02 2.62 16 Total: -1.00 -80.28 339.95 4.83 -75.45 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.00 Total: 7.69 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 7.75 Total: 17.82 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -5.88 Total: -122.43 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.07 Total: -27.98 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -80.28 4.83 -75.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027366313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.236 kcal (2) G-P(sol) polarization free energy of solvation -80.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds