Wall clock time and date at job start Tue Mar 31 2020 07:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 119.99810 * 2 1 4 4 H 1.08007 * 119.99706 * 202.06889 * 3 2 1 5 5 C 1.38809 * 120.00341 * 22.07172 * 3 2 1 6 6 N 1.31624 * 119.99744 * 12.39601 * 5 3 2 7 7 Si 1.86803 * 120.00244 * 192.40264 * 5 3 2 8 8 H 1.48491 * 109.47426 * 89.99655 * 7 5 3 9 9 H 1.48500 * 109.47049 * 209.99979 * 7 5 3 10 10 H 1.48506 * 109.46677 * 329.99525 * 7 5 3 11 11 C 1.46498 * 119.99852 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.49779 * 179.97438 * 11 2 1 13 13 C 1.53044 * 109.52750 * 59.85029 * 11 2 1 14 14 C 1.53041 * 109.53735 * 178.66741 * 13 11 2 15 15 C 1.53188 * 109.31203 * 61.36844 * 14 13 11 16 16 N 1.46969 * 108.88744 * 305.44081 * 15 14 13 17 17 C 1.34781 * 120.65093 * 233.53781 * 16 15 14 18 18 O 1.21284 * 119.99487 * 179.81581 * 17 16 15 19 19 C 1.50698 * 120.00291 * 359.81631 * 17 16 15 20 20 C 1.50700 * 109.47297 * 180.02562 * 19 17 16 21 21 C 1.34845 * 125.89255 * 84.99917 * 20 19 17 22 22 C 1.40890 * 107.42181 * 180.02562 * 21 20 19 23 23 C 1.34851 * 107.41325 * 359.97438 * 22 21 20 24 24 N 1.36345 * 125.88609 * 264.69366 * 20 19 17 25 25 H 0.96992 * 125.63887 * 359.97438 * 24 20 19 26 26 C 1.46920 * 118.71430 * 53.35893 * 16 15 14 27 27 H 1.09005 * 109.47091 * 274.30485 * 1 2 3 28 28 H 1.09003 * 109.47455 * 34.30891 * 1 2 3 29 29 H 1.09007 * 109.47610 * 154.30565 * 1 2 3 30 30 H 0.96997 * 119.99336 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.45765 * 298.68950 * 13 11 2 32 32 H 1.08996 * 109.45428 * 58.64673 * 13 11 2 33 33 H 1.08997 * 109.49542 * 181.31655 * 14 13 11 34 34 H 1.09000 * 109.49900 * 301.41580 * 14 13 11 35 35 H 1.08999 * 109.59139 * 65.14926 * 15 14 13 36 36 H 1.09006 * 109.58874 * 185.57804 * 15 14 13 37 37 H 1.08997 * 109.47219 * 300.00051 * 19 17 16 38 38 H 1.09000 * 109.46965 * 59.99881 * 19 17 16 39 39 H 1.08004 * 126.28863 * 0.02562 * 21 20 19 40 40 H 1.07991 * 126.29720 * 179.97438 * 22 21 20 41 41 H 1.08002 * 125.89334 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.58378 * 186.78628 * 26 16 15 43 43 H 1.08997 * 109.58653 * 66.50238 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1703 1.2201 -0.3514 5 6 1.5319 2.3440 0.4517 6 7 0.3898 2.2700 1.1018 7 14 2.3213 4.0075 0.1368 8 1 1.8348 4.5493 -1.1573 9 1 1.9595 4.9424 1.2323 10 1 3.7974 3.8530 0.0852 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0701 -0.0009 13 6 1.8258 -2.0734 -1.2482 14 6 2.6157 -3.3841 -1.2660 15 6 2.2508 -4.2123 -0.0301 16 7 2.4662 -3.3940 1.1716 17 6 3.2372 -3.8450 2.1809 18 8 3.4096 -3.1583 3.1657 19 6 3.8852 -5.2022 2.0858 20 6 4.6866 -5.4650 3.3347 21 6 4.2072 -5.9678 4.4904 22 6 5.2853 -6.0511 5.3935 23 6 6.3827 -5.5965 4.7550 24 7 6.0226 -5.2407 3.4890 25 1 6.6179 -4.8847 2.8110 26 6 1.8278 -2.0731 1.2497 27 1 -0.3633 0.0771 1.0248 28 1 -0.3634 0.8489 -0.5792 29 1 -0.3634 -0.9261 -0.4456 30 1 -0.0420 3.0793 1.4171 31 1 0.7582 -2.2930 -1.2340 32 1 2.0652 -1.4930 -2.1392 33 1 2.3680 -3.9459 -2.1665 34 1 3.6835 -3.1655 -1.2551 35 1 1.2033 -4.5085 -0.0849 36 1 2.8819 -5.1001 0.0143 37 1 3.1147 -5.9661 1.9815 38 1 4.5443 -5.2301 1.2181 39 1 3.1846 -6.2540 4.6876 40 1 5.2412 -6.4125 6.4102 41 1 7.3763 -5.5294 5.1731 42 1 2.1798 -1.5492 2.1384 43 1 0.7456 -2.1927 1.3006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027686739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:33 Heat of formation + Delta-G solvation = 36.974020 kcal Electronic energy + Delta-G solvation = -23641.608376 eV Core-core repulsion = 20302.348481 eV Total energy + Delta-G solvation = -3339.259896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.14736 -39.70874 -37.36248 -35.07233 -32.55270 -31.78101 -31.19758 -30.87917 -28.81749 -26.70820 -26.00092 -24.71481 -23.41813 -21.69303 -20.66616 -20.29478 -19.62422 -18.59976 -17.42626 -17.02024 -16.70422 -15.41175 -15.28653 -14.86953 -14.19368 -14.11428 -13.80549 -13.71102 -13.58539 -13.43818 -13.05744 -12.81456 -12.63300 -12.33012 -12.26602 -12.18095 -11.86509 -11.62071 -11.16788 -11.01124 -10.80742 -10.63827 -10.40207 -10.33608 -10.16823 -9.85656 -9.75574 -9.51642 -8.79281 -8.57816 -8.28648 -7.99267 -6.76087 -5.71740 -3.17760 2.23029 2.86309 3.01029 3.27616 3.38980 3.43542 3.46256 3.47509 4.49303 4.65032 4.76504 4.94243 4.99611 5.12586 5.19793 5.27983 5.31400 5.44261 5.52367 5.54724 5.59208 5.74332 5.75128 5.91203 5.99999 6.11457 6.22506 6.25768 6.34931 6.37757 6.50330 6.69172 6.78595 6.93794 6.99182 7.02344 7.16011 7.39193 7.58217 7.71834 7.72908 7.81871 8.39225 8.47112 9.24016 9.86567 10.34811 11.33056 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.003862 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.540838 B = 7249.138137 C = 8026.816242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.169 3.831 12 H 0.062 0.938 13 C -0.134 4.134 14 C -0.131 4.131 15 C 0.107 3.893 16 N -0.609 5.609 17 C 0.507 3.493 18 O -0.527 6.527 19 C -0.071 4.071 20 C 0.036 3.964 21 C -0.182 4.182 22 C -0.201 4.201 23 C -0.015 4.015 24 N -0.553 5.553 25 H 0.411 0.589 26 C 0.099 3.901 27 H 0.028 0.972 28 H 0.044 0.956 29 H -0.001 1.001 30 H 0.253 0.747 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.161 0.839 42 H 0.090 0.910 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.232 -19.095 -1.474 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.060 3.940 12 H 0.081 0.919 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.016 4.016 16 N -0.343 5.343 17 C 0.294 3.706 18 O -0.403 6.403 19 C -0.111 4.111 20 C -0.077 4.077 21 C -0.207 4.207 22 C -0.226 4.226 23 C -0.146 4.146 24 N -0.148 5.148 25 H 0.247 0.753 26 C -0.025 4.025 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.113 0.887 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.179 0.821 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.288 -18.484 -0.962 19.892 hybrid contribution 0.531 1.166 -0.403 1.343 sum 7.819 -17.318 -1.365 19.050 Atomic orbital electron populations 1.20795 0.82534 0.95606 0.99322 1.43939 1.01885 1.00019 1.85525 1.19231 0.97874 0.85176 1.36318 0.91398 1.25022 0.97783 0.98516 0.98184 1.70074 1.18314 1.27072 1.39628 0.86232 0.78779 0.84052 0.77340 1.21501 1.21696 1.20527 1.20615 0.96347 0.86234 0.90814 0.91925 1.22087 0.99693 0.94955 1.00585 1.21903 1.00945 0.97353 0.96786 1.21749 1.01392 0.93471 0.85013 1.48319 1.49378 1.19147 1.17484 1.20475 0.79220 0.87973 0.82967 1.90751 1.60695 1.58079 1.30790 1.20177 0.99218 0.96527 0.95219 1.19556 0.83685 1.07123 0.97363 1.20601 0.99067 1.07988 0.93031 1.20844 0.92784 1.08941 1.00048 1.21747 1.00081 1.07490 0.85269 1.41876 1.08416 1.51642 1.12846 0.75332 1.22520 0.96739 0.80976 1.02274 0.95324 0.93705 0.98263 0.93704 0.92199 0.91741 0.91232 0.91868 0.91416 0.90427 0.87086 0.88679 0.85095 0.84948 0.82143 0.89156 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 7.91 59.85 0.47 4.42 16 2 N -0.59 -14.74 2.82 -173.34 -0.49 -15.23 16 3 C -0.26 -7.11 9.60 -15.06 -0.14 -7.25 16 4 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 5 C 0.00 0.10 5.11 -17.43 -0.09 0.01 16 6 N -0.91 -26.68 10.63 55.49 0.59 -26.09 16 7 Si 0.91 22.17 29.57 -169.99 -5.03 17.14 16 8 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C 0.17 3.43 2.74 -67.81 -0.19 3.25 16 12 H 0.06 1.35 7.86 -51.93 -0.41 0.94 16 13 C -0.13 -2.14 5.13 -26.69 -0.14 -2.28 16 14 C -0.13 -1.53 6.08 -26.61 -0.16 -1.70 16 15 C 0.11 1.17 6.34 -3.69 -0.02 1.15 16 16 N -0.61 -9.30 2.98 -172.74 -0.51 -9.81 16 17 C 0.51 8.04 7.69 -10.98 -0.08 7.96 16 18 O -0.53 -11.04 15.45 5.55 0.09 -10.95 16 19 C -0.07 -0.77 4.59 -29.04 -0.13 -0.91 16 20 C 0.04 0.45 5.66 -81.79 -0.46 -0.01 16 21 C -0.18 -2.46 10.76 -39.78 -0.43 -2.88 16 22 C -0.20 -2.49 10.86 -39.78 -0.43 -2.93 16 23 C -0.01 -0.16 11.94 -16.74 -0.20 -0.36 16 24 N -0.55 -6.20 6.08 -9.12 -0.06 -6.26 16 25 H 0.41 3.52 8.96 -40.82 -0.37 3.16 16 26 C 0.10 1.92 5.79 -3.71 -0.02 1.90 16 27 H 0.03 0.76 7.41 -51.93 -0.39 0.38 16 28 H 0.04 1.18 7.20 -51.93 -0.37 0.80 16 29 H 0.00 -0.02 6.45 -51.92 -0.34 -0.36 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.06 0.96 6.71 -51.93 -0.35 0.61 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.60 5.94 -51.93 -0.31 0.29 16 37 H 0.11 0.95 7.95 -51.93 -0.41 0.53 16 38 H 0.09 0.79 7.69 -51.93 -0.40 0.39 16 39 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 40 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 41 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.09 2.12 7.00 -51.93 -0.36 1.75 16 43 H 0.06 1.19 7.51 -51.93 -0.39 0.80 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -34.34 342.60 -8.87 -43.22 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.60 Total: 2.46 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.03 Total: 0.36 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.47 Total: -57.38 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.34 -8.87 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027686739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.191 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds