Wall clock time and date at job start Tue Mar 31 2020 07:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 119.99810 * 2 1 4 4 H 1.08007 * 119.99706 * 202.06889 * 3 2 1 5 5 C 1.38809 * 120.00341 * 22.07172 * 3 2 1 6 6 N 1.31624 * 119.99744 * 12.39601 * 5 3 2 7 7 Si 1.86803 * 120.00244 * 192.40264 * 5 3 2 8 8 H 1.48491 * 109.47426 * 89.99655 * 7 5 3 9 9 H 1.48500 * 109.47049 * 209.99979 * 7 5 3 10 10 H 1.48506 * 109.46677 * 329.99525 * 7 5 3 11 11 C 1.46498 * 119.99852 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.49779 * 179.97438 * 11 2 1 13 13 C 1.53044 * 109.52750 * 59.85029 * 11 2 1 14 14 C 1.53041 * 109.53735 * 178.66741 * 13 11 2 15 15 C 1.53188 * 109.31203 * 61.36844 * 14 13 11 16 16 N 1.46969 * 108.88744 * 305.44081 * 15 14 13 17 17 C 1.34781 * 120.65093 * 233.53781 * 16 15 14 18 18 O 1.21284 * 119.99487 * 179.81581 * 17 16 15 19 19 C 1.50698 * 120.00291 * 359.81631 * 17 16 15 20 20 C 1.50700 * 109.47297 * 180.02562 * 19 17 16 21 21 C 1.34845 * 125.89255 * 84.99917 * 20 19 17 22 22 C 1.40890 * 107.42181 * 180.02562 * 21 20 19 23 23 C 1.34851 * 107.41325 * 359.97438 * 22 21 20 24 24 N 1.36345 * 125.88609 * 264.69366 * 20 19 17 25 25 H 0.96992 * 125.63887 * 359.97438 * 24 20 19 26 26 C 1.46920 * 118.71430 * 53.35893 * 16 15 14 27 27 H 1.09005 * 109.47091 * 274.30485 * 1 2 3 28 28 H 1.09003 * 109.47455 * 34.30891 * 1 2 3 29 29 H 1.09007 * 109.47610 * 154.30565 * 1 2 3 30 30 H 0.96997 * 119.99336 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.45765 * 298.68950 * 13 11 2 32 32 H 1.08996 * 109.45428 * 58.64673 * 13 11 2 33 33 H 1.08997 * 109.49542 * 181.31655 * 14 13 11 34 34 H 1.09000 * 109.49900 * 301.41580 * 14 13 11 35 35 H 1.08999 * 109.59139 * 65.14926 * 15 14 13 36 36 H 1.09006 * 109.58874 * 185.57804 * 15 14 13 37 37 H 1.08997 * 109.47219 * 300.00051 * 19 17 16 38 38 H 1.09000 * 109.46965 * 59.99881 * 19 17 16 39 39 H 1.08004 * 126.28863 * 0.02562 * 21 20 19 40 40 H 1.07991 * 126.29720 * 179.97438 * 22 21 20 41 41 H 1.08002 * 125.89334 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.58378 * 186.78628 * 26 16 15 43 43 H 1.08997 * 109.58653 * 66.50238 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1703 1.2201 -0.3514 5 6 1.5319 2.3440 0.4517 6 7 0.3898 2.2700 1.1018 7 14 2.3213 4.0075 0.1368 8 1 1.8348 4.5493 -1.1573 9 1 1.9595 4.9424 1.2323 10 1 3.7974 3.8530 0.0852 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0701 -0.0009 13 6 1.8258 -2.0734 -1.2482 14 6 2.6157 -3.3841 -1.2660 15 6 2.2508 -4.2123 -0.0301 16 7 2.4662 -3.3940 1.1716 17 6 3.2372 -3.8450 2.1809 18 8 3.4096 -3.1583 3.1657 19 6 3.8852 -5.2022 2.0858 20 6 4.6866 -5.4650 3.3347 21 6 4.2072 -5.9678 4.4904 22 6 5.2853 -6.0511 5.3935 23 6 6.3827 -5.5965 4.7550 24 7 6.0226 -5.2407 3.4890 25 1 6.6179 -4.8847 2.8110 26 6 1.8278 -2.0731 1.2497 27 1 -0.3633 0.0771 1.0248 28 1 -0.3634 0.8489 -0.5792 29 1 -0.3634 -0.9261 -0.4456 30 1 -0.0420 3.0793 1.4171 31 1 0.7582 -2.2930 -1.2340 32 1 2.0652 -1.4930 -2.1392 33 1 2.3680 -3.9459 -2.1665 34 1 3.6835 -3.1655 -1.2551 35 1 1.2033 -4.5085 -0.0849 36 1 2.8819 -5.1001 0.0143 37 1 3.1147 -5.9661 1.9815 38 1 4.5443 -5.2301 1.2181 39 1 3.1846 -6.2540 4.6876 40 1 5.2412 -6.4125 6.4102 41 1 7.3763 -5.5294 5.1731 42 1 2.1798 -1.5492 2.1384 43 1 0.7456 -2.1927 1.3006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027686739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:32 Heat of formation + Delta-G solvation = 14.230733 kcal Electronic energy + Delta-G solvation = -23642.594599 eV Core-core repulsion = 20302.348481 eV Total energy + Delta-G solvation = -3340.246119 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.06435 -40.95129 -38.83935 -36.75283 -34.09702 -32.82969 -32.77826 -31.77119 -30.41501 -28.08357 -27.72749 -25.92269 -25.12971 -23.03407 -21.66964 -21.31824 -20.88327 -19.89942 -18.81058 -18.37739 -18.12323 -17.02265 -16.57332 -16.38148 -15.71363 -15.35865 -15.22892 -14.95921 -14.65334 -14.46692 -14.33845 -14.25426 -13.96477 -13.81322 -13.46237 -13.31971 -13.10339 -12.92353 -12.83445 -12.50531 -12.47487 -12.21930 -12.13813 -12.05949 -11.72883 -11.62279 -11.38387 -10.83216 -10.66757 -9.69843 -9.65336 -8.90221 -8.78394 -7.86163 -5.34507 1.29478 1.42869 1.43950 1.52866 1.67041 2.00179 2.25735 2.48558 2.56552 3.27278 3.61500 3.65053 3.87948 4.02290 4.12747 4.18326 4.25020 4.30888 4.39153 4.47258 4.53884 4.64389 4.66748 4.73266 4.81327 4.88453 4.92412 4.96286 5.07425 5.18619 5.25855 5.37061 5.43373 5.43988 5.52585 5.57450 5.61567 5.70132 6.11368 6.25131 6.29622 6.51786 6.83712 7.11828 7.25053 7.84231 8.26322 9.16636 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019285 B = 0.003862 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.540838 B = 7249.138137 C = 8026.816242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.267 4.267 4 H 0.067 0.933 5 C -0.053 4.053 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.281 1.281 9 H -0.296 1.296 10 H -0.271 1.271 11 C 0.168 3.832 12 H 0.043 0.957 13 C -0.124 4.124 14 C -0.122 4.122 15 C 0.100 3.900 16 N -0.606 5.606 17 C 0.501 3.499 18 O -0.590 6.590 19 C -0.057 4.057 20 C 0.020 3.980 21 C -0.211 4.211 22 C -0.230 4.230 23 C -0.012 4.012 24 N -0.551 5.551 25 H 0.423 0.577 26 C 0.114 3.886 27 H -0.004 1.004 28 H 0.018 0.982 29 H 0.036 0.964 30 H 0.248 0.752 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.142 0.858 41 H 0.192 0.808 42 H 0.038 0.962 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.660 -21.689 -3.553 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.397 4.397 4 H 0.085 0.915 5 C -0.248 4.248 6 N -0.585 5.585 7 Si 0.798 3.202 8 H -0.207 1.207 9 H -0.222 1.222 10 H -0.196 1.196 11 C 0.060 3.940 12 H 0.061 0.939 13 C -0.163 4.163 14 C -0.161 4.161 15 C -0.020 4.020 16 N -0.339 5.339 17 C 0.291 3.709 18 O -0.470 6.470 19 C -0.097 4.097 20 C -0.094 4.094 21 C -0.236 4.236 22 C -0.254 4.254 23 C -0.143 4.143 24 N -0.146 5.146 25 H 0.261 0.739 26 C -0.011 4.011 27 H 0.014 0.986 28 H 0.036 0.964 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.143 0.857 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.160 0.840 41 H 0.209 0.791 42 H 0.056 0.944 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.742 -21.143 -3.103 23.088 hybrid contribution 0.123 1.913 0.280 1.937 sum 8.865 -19.230 -2.823 21.362 Atomic orbital electron populations 1.20483 0.82553 0.96216 0.97173 1.44178 1.02203 1.01087 1.85794 1.19555 0.97984 0.86663 1.35493 0.91505 1.25801 0.98549 1.01909 0.98500 1.70249 1.19736 1.27455 1.41031 0.85229 0.78264 0.79709 0.77029 1.20710 1.22222 1.19604 1.20787 0.94717 0.85198 0.93311 0.93899 1.21933 1.00636 0.96589 0.97150 1.21895 1.00170 0.95105 0.98915 1.22180 1.03635 0.93953 0.82274 1.48362 1.48656 1.17698 1.19233 1.21443 0.78364 0.89314 0.81800 1.90730 1.62799 1.60217 1.33294 1.20240 1.00124 0.93451 0.95872 1.19836 0.84469 1.07127 0.97947 1.20875 0.99502 1.09090 0.94100 1.21163 0.93262 1.10132 1.00853 1.22283 1.01104 1.05895 0.85038 1.41974 1.08280 1.51125 1.13271 0.73904 1.21913 0.96376 0.83292 0.99519 0.98553 0.96358 0.94534 0.94260 0.91905 0.92648 0.87238 0.91728 0.89843 0.85717 0.83828 0.84874 0.85277 0.83979 0.79078 0.94354 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.05 7.91 127.77 1.01 10.06 16 2 N -0.61 -31.23 2.82 -702.32 -1.98 -33.21 16 3 C -0.27 -15.20 9.60 84.03 0.81 -14.39 16 4 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 5 C -0.05 -3.04 5.11 84.86 0.43 -2.61 16 6 N -0.94 -57.45 10.63 21.65 0.23 -57.22 16 7 Si 0.97 46.59 29.57 68.60 2.03 48.62 16 8 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 9 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 11 C 0.17 6.85 2.74 45.07 0.12 6.97 16 12 H 0.04 1.89 7.86 -2.39 -0.02 1.87 16 13 C -0.12 -3.70 5.13 30.62 0.16 -3.54 16 14 C -0.12 -2.30 6.08 30.67 0.19 -2.11 16 15 C 0.10 1.71 6.34 86.35 0.55 2.26 16 16 N -0.61 -17.48 2.98 -818.80 -2.44 -19.92 16 17 C 0.50 15.28 7.69 87.66 0.67 15.95 16 18 O -0.59 -25.43 15.45 -3.04 -0.05 -25.47 16 19 C -0.06 -1.04 4.59 29.10 0.13 -0.91 16 20 C 0.02 0.46 5.66 41.08 0.23 0.70 16 21 C -0.21 -5.56 10.76 22.14 0.24 -5.32 16 22 C -0.23 -5.54 10.86 22.14 0.24 -5.30 16 23 C -0.01 -0.24 11.94 83.21 0.99 0.76 16 24 N -0.55 -11.21 6.08 -182.76 -1.11 -12.32 16 25 H 0.42 6.19 8.96 -92.71 -0.83 5.36 16 26 C 0.11 4.56 5.79 86.36 0.50 5.06 16 27 H 0.00 -0.22 7.41 -2.38 -0.02 -0.23 16 28 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 29 H 0.04 1.52 6.45 -2.38 -0.02 1.50 16 30 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.06 1.84 6.71 -2.39 -0.02 1.83 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.12 1.05 5.94 -2.38 -0.01 1.04 16 37 H 0.14 1.73 7.95 -2.39 -0.02 1.71 16 38 H 0.13 1.45 7.69 -2.39 -0.02 1.43 16 39 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 40 H 0.14 2.94 8.06 -2.92 -0.02 2.91 16 41 H 0.19 2.49 8.06 -2.91 -0.02 2.46 16 42 H 0.04 1.91 7.00 -2.39 -0.02 1.89 16 43 H 0.06 2.23 7.51 -2.39 -0.02 2.21 16 Total: -1.00 -81.44 342.60 3.14 -78.30 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.18 Total: 13.64 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.28 Total: 7.58 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -5.30 Total: -122.66 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.05 Total: -25.47 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -81.44 3.14 -78.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027686739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.533 kcal (2) G-P(sol) polarization free energy of solvation -81.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds