Wall clock time and date at job start Tue Mar 31 2020 07:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36929 * 120.00296 * 2 1 4 4 H 1.08001 * 120.00259 * 144.47145 * 3 2 1 5 5 C 1.38813 * 120.00070 * 324.46882 * 3 2 1 6 6 N 1.31620 * 120.00165 * 157.65398 * 5 3 2 7 7 Si 1.86807 * 119.99969 * 337.66249 * 5 3 2 8 8 H 1.48497 * 109.47023 * 95.56915 * 7 5 3 9 9 H 1.48499 * 109.46743 * 215.57198 * 7 5 3 10 10 H 1.48503 * 109.46669 * 335.56708 * 7 5 3 11 11 C 1.46504 * 119.99454 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.49439 * 180.02562 * 11 2 1 13 13 C 1.53040 * 109.52464 * 300.14623 * 11 2 1 14 14 C 1.53040 * 109.53573 * 181.33539 * 13 11 2 15 15 C 1.53622 * 109.24194 * 298.50822 * 14 13 11 16 16 N 1.46924 * 108.54306 * 54.85957 * 15 14 13 17 17 C 1.34781 * 120.62947 * 126.36334 * 16 15 14 18 18 O 1.21281 * 119.99567 * 179.71825 * 17 16 15 19 19 C 1.50695 * 120.00289 * 359.72540 * 17 16 15 20 20 C 1.50696 * 109.47237 * 179.97438 * 19 17 16 21 21 C 1.34845 * 125.89193 * 275.02405 * 20 19 17 22 22 C 1.40889 * 107.41887 * 179.97438 * 21 20 19 23 23 C 1.34852 * 107.41725 * 359.72867 * 22 21 20 24 24 N 1.36342 * 108.21559 * 0.43261 * 23 22 21 25 25 H 0.97007 * 125.63357 * 179.82672 * 24 23 22 26 26 C 1.46921 * 118.73845 * 306.09372 * 16 15 14 27 27 H 1.08997 * 109.47343 * 267.79625 * 1 2 3 28 28 H 1.09004 * 109.46580 * 27.79671 * 1 2 3 29 29 H 1.09002 * 109.47285 * 147.78775 * 1 2 3 30 30 H 0.96998 * 120.00050 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46046 * 301.35709 * 13 11 2 32 32 H 1.08998 * 109.45991 * 61.31722 * 13 11 2 33 33 H 1.08998 * 109.50055 * 58.58972 * 14 13 11 34 34 H 1.09003 * 109.49459 * 178.65080 * 14 13 11 35 35 H 1.08992 * 109.74093 * 295.12182 * 15 14 13 36 36 H 1.09008 * 109.65956 * 174.54937 * 15 14 13 37 37 H 1.09003 * 109.46888 * 59.99280 * 19 17 16 38 38 H 1.09004 * 109.46626 * 299.99828 * 19 17 16 39 39 H 1.08000 * 126.29175 * 359.97438 * 21 20 19 40 40 H 1.08005 * 126.29112 * 180.02562 * 22 21 20 41 41 H 1.08004 * 125.89396 * 180.25240 * 23 22 21 42 42 H 1.08995 * 109.59010 * 173.64490 * 26 16 15 43 43 H 1.09000 * 109.58875 * 294.07113 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.0790 1.2729 0.5435 5 6 1.6496 2.2761 -0.6986 6 7 2.0224 3.4951 -0.3708 7 14 0.4472 2.0132 -2.1039 8 1 -0.9421 2.1630 -1.6012 9 1 0.7003 3.0192 -3.1665 10 1 0.6277 0.6485 -2.6610 11 6 2.1974 -1.2688 0.0006 12 1 3.2692 -1.0702 0.0009 13 6 1.8258 -2.0734 1.2482 14 6 2.6156 -3.3841 1.2661 15 6 2.2461 -4.2147 0.0278 16 7 2.4686 -3.3929 -1.1696 17 6 3.2415 -3.8433 -2.1778 18 8 3.4133 -3.1574 -3.1631 19 6 3.8920 -5.1992 -2.0807 20 6 4.6950 -5.4616 -3.3286 21 6 4.2175 -5.9660 -4.4844 22 6 5.2967 -6.0483 -5.3864 23 6 6.3914 -5.5852 -4.7494 24 7 6.0295 -5.2292 -3.4840 25 1 6.6226 -4.8666 -2.8074 26 6 1.8278 -2.0732 -1.2497 27 1 -0.3634 -0.0395 1.0269 28 1 -0.3633 0.9091 -0.4793 29 1 -0.3634 -0.8695 -0.5478 30 1 1.6726 4.2569 -0.8588 31 1 2.0651 -1.4930 2.1393 32 1 0.7582 -2.2929 1.2341 33 1 3.6834 -3.1656 1.2553 34 1 2.3683 -3.9456 2.1670 35 1 1.1976 -4.5075 0.0803 36 1 2.8743 -5.1045 -0.0178 37 1 3.1229 -5.9645 -1.9762 38 1 4.5505 -5.2248 -1.2124 39 1 3.1956 -6.2541 -4.6823 40 1 5.2540 -6.4106 -6.4030 41 1 7.3842 -5.5120 -5.1682 42 1 2.1797 -1.5494 -2.1384 43 1 0.7457 -2.1948 -1.2992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027686756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:37 Heat of formation + Delta-G solvation = 42.226852 kcal Electronic energy + Delta-G solvation = -23779.998468 eV Core-core repulsion = 20440.966352 eV Total energy + Delta-G solvation = -3339.032116 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.19053 -39.81484 -37.51253 -35.27086 -32.59135 -31.85461 -31.51243 -30.91210 -29.42291 -26.83734 -26.16368 -24.82130 -23.67184 -21.68759 -20.70556 -20.34399 -19.71845 -18.75360 -17.47602 -17.07197 -16.83762 -15.61840 -15.35594 -15.28980 -14.30830 -14.24243 -14.07245 -13.72818 -13.55103 -13.47690 -13.20361 -12.88435 -12.72647 -12.38564 -12.30677 -12.26451 -12.22759 -12.18438 -11.68294 -11.36668 -11.07908 -10.66911 -10.53859 -10.42118 -10.07560 -9.94892 -9.64516 -9.57492 -8.82771 -8.52499 -8.42087 -8.03114 -6.87549 -6.00688 -3.41264 2.18875 2.77940 2.95873 3.22298 3.31584 3.37540 3.49929 3.55219 4.52039 4.58783 4.67162 4.82640 4.92383 5.04734 5.12601 5.17106 5.21664 5.25561 5.31872 5.47174 5.50771 5.63571 5.71207 5.73340 5.82735 6.01155 6.08508 6.19938 6.22060 6.30250 6.30949 6.37880 6.46920 6.63803 6.69169 6.83797 6.86898 6.98600 7.12390 7.53239 7.62553 8.01455 8.33159 8.38038 8.94951 9.68868 10.06971 11.14829 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018759 B = 0.004295 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.266547 B = 6517.615905 C = 7330.103260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.602 5.602 3 C -0.271 4.271 4 H 0.080 0.920 5 C 0.036 3.964 6 N -0.900 5.900 7 Si 0.882 3.118 8 H -0.287 1.287 9 H -0.302 1.302 10 H -0.269 1.269 11 C 0.167 3.833 12 H 0.073 0.927 13 C -0.131 4.131 14 C -0.131 4.131 15 C 0.106 3.894 16 N -0.609 5.609 17 C 0.508 3.492 18 O -0.527 6.527 19 C -0.070 4.070 20 C 0.034 3.966 21 C -0.182 4.182 22 C -0.202 4.202 23 C -0.013 4.013 24 N -0.553 5.553 25 H 0.411 0.589 26 C 0.093 3.907 27 H 0.017 0.983 28 H 0.045 0.955 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.162 0.838 42 H 0.091 0.909 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.931 -22.087 -0.375 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.325 5.325 3 C -0.399 4.399 4 H 0.098 0.902 5 C -0.165 4.165 6 N -0.541 5.541 7 Si 0.713 3.287 8 H -0.215 1.215 9 H -0.230 1.230 10 H -0.193 1.193 11 C 0.059 3.941 12 H 0.091 0.909 13 C -0.171 4.171 14 C -0.170 4.170 15 C -0.017 4.017 16 N -0.344 5.344 17 C 0.294 3.706 18 O -0.402 6.402 19 C -0.111 4.111 20 C -0.079 4.079 21 C -0.207 4.207 22 C -0.227 4.227 23 C -0.145 4.145 24 N -0.147 5.147 25 H 0.247 0.753 26 C -0.030 4.030 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.179 0.821 42 H 0.110 0.890 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.105 -21.439 -0.842 21.845 hybrid contribution -0.527 0.232 -0.514 0.772 sum 3.578 -21.207 -1.356 21.550 Atomic orbital electron populations 1.21332 0.84890 0.98996 0.98266 1.44079 1.00504 1.01534 1.86343 1.18796 1.08262 0.86255 1.26585 0.90215 1.25432 0.98254 0.95191 0.97638 1.69858 1.46158 0.97685 1.40379 0.86878 0.80241 0.77955 0.83614 1.21508 1.22988 1.19337 1.20769 0.96997 0.85627 0.90713 0.90890 1.22037 0.99490 0.95050 1.00512 1.21983 1.01089 0.97163 0.96789 1.21853 1.01383 0.93479 0.84961 1.48252 1.49316 1.18879 1.17918 1.20506 0.79175 0.88013 0.82868 1.90753 1.60721 1.58043 1.30690 1.20167 0.99210 0.96350 0.95349 1.19541 0.83765 1.07210 0.97334 1.20596 0.99036 1.08017 0.93039 1.20846 0.92806 1.08929 1.00083 1.21758 1.00143 1.07274 0.85284 1.41881 1.08552 1.51355 1.12937 0.75274 1.22484 0.96640 0.81585 1.02329 0.96434 0.93649 0.95188 0.92644 0.91384 0.92411 0.91620 0.91120 0.91369 0.90246 0.87056 0.88558 0.85133 0.84942 0.82094 0.89040 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.37 8.55 59.85 0.51 2.88 16 2 N -0.60 -14.18 2.41 -173.34 -0.42 -14.59 16 3 C -0.27 -7.61 9.85 -15.06 -0.15 -7.76 16 4 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 5 C 0.04 1.04 5.31 -17.43 -0.09 0.95 16 6 N -0.90 -27.75 13.97 55.49 0.78 -26.97 16 7 Si 0.88 22.87 24.94 -169.99 -4.24 18.63 16 8 H -0.29 -7.14 6.67 56.52 0.38 -6.77 16 9 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 10 H -0.27 -6.92 7.11 56.52 0.40 -6.51 16 11 C 0.17 3.24 2.74 -67.81 -0.19 3.05 16 12 H 0.07 1.54 7.89 -51.93 -0.41 1.13 16 13 C -0.13 -1.99 5.14 -26.69 -0.14 -2.13 16 14 C -0.13 -1.45 6.10 -26.39 -0.16 -1.61 16 15 C 0.11 1.08 6.37 -3.49 -0.02 1.06 16 16 N -0.61 -8.86 2.97 -172.51 -0.51 -9.37 16 17 C 0.51 7.76 7.69 -10.99 -0.08 7.68 16 18 O -0.53 -10.74 15.45 5.56 0.09 -10.65 16 19 C -0.07 -0.73 4.58 -29.04 -0.13 -0.87 16 20 C 0.03 0.43 5.66 -81.79 -0.46 -0.04 16 21 C -0.18 -2.40 10.76 -39.78 -0.43 -2.82 16 22 C -0.20 -2.45 10.86 -39.78 -0.43 -2.88 16 23 C -0.01 -0.15 11.94 -16.75 -0.20 -0.35 16 24 N -0.55 -6.07 6.07 -9.12 -0.06 -6.13 16 25 H 0.41 3.46 8.96 -40.82 -0.37 3.09 16 26 C 0.09 1.72 5.78 -3.71 -0.02 1.70 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 1.08 3.10 -51.93 -0.16 0.92 16 29 H 0.03 0.57 6.35 -51.93 -0.33 0.24 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.85 7.71 -51.93 -0.40 0.45 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.56 5.93 -51.92 -0.31 0.26 16 37 H 0.11 0.89 7.93 -51.93 -0.41 0.48 16 38 H 0.10 0.76 7.70 -51.93 -0.40 0.36 16 39 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 42 H 0.09 2.04 7.01 -51.93 -0.36 1.68 16 43 H 0.06 1.07 6.49 -51.93 -0.34 0.73 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -35.32 338.37 -7.71 -43.03 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.45 Total: 2.08 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.00 Total: -1.13 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.21 Total: -57.06 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.24 Total: 18.63 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.32 -7.71 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027686756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.261 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds