Wall clock time and date at job start Tue Mar 31 2020 07:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36929 * 120.00296 * 2 1 4 4 H 1.08001 * 120.00259 * 144.47145 * 3 2 1 5 5 C 1.38813 * 120.00070 * 324.46882 * 3 2 1 6 6 N 1.31620 * 120.00165 * 157.65398 * 5 3 2 7 7 Si 1.86807 * 119.99969 * 337.66249 * 5 3 2 8 8 H 1.48497 * 109.47023 * 95.56915 * 7 5 3 9 9 H 1.48499 * 109.46743 * 215.57198 * 7 5 3 10 10 H 1.48503 * 109.46669 * 335.56708 * 7 5 3 11 11 C 1.46504 * 119.99454 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.49439 * 180.02562 * 11 2 1 13 13 C 1.53040 * 109.52464 * 300.14623 * 11 2 1 14 14 C 1.53040 * 109.53573 * 181.33539 * 13 11 2 15 15 C 1.53622 * 109.24194 * 298.50822 * 14 13 11 16 16 N 1.46924 * 108.54306 * 54.85957 * 15 14 13 17 17 C 1.34781 * 120.62947 * 126.36334 * 16 15 14 18 18 O 1.21281 * 119.99567 * 179.71825 * 17 16 15 19 19 C 1.50695 * 120.00289 * 359.72540 * 17 16 15 20 20 C 1.50696 * 109.47237 * 179.97438 * 19 17 16 21 21 C 1.34845 * 125.89193 * 275.02405 * 20 19 17 22 22 C 1.40889 * 107.41887 * 179.97438 * 21 20 19 23 23 C 1.34852 * 107.41725 * 359.72867 * 22 21 20 24 24 N 1.36342 * 108.21559 * 0.43261 * 23 22 21 25 25 H 0.97007 * 125.63357 * 179.82672 * 24 23 22 26 26 C 1.46921 * 118.73845 * 306.09372 * 16 15 14 27 27 H 1.08997 * 109.47343 * 267.79625 * 1 2 3 28 28 H 1.09004 * 109.46580 * 27.79671 * 1 2 3 29 29 H 1.09002 * 109.47285 * 147.78775 * 1 2 3 30 30 H 0.96998 * 120.00050 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46046 * 301.35709 * 13 11 2 32 32 H 1.08998 * 109.45991 * 61.31722 * 13 11 2 33 33 H 1.08998 * 109.50055 * 58.58972 * 14 13 11 34 34 H 1.09003 * 109.49459 * 178.65080 * 14 13 11 35 35 H 1.08992 * 109.74093 * 295.12182 * 15 14 13 36 36 H 1.09008 * 109.65956 * 174.54937 * 15 14 13 37 37 H 1.09003 * 109.46888 * 59.99280 * 19 17 16 38 38 H 1.09004 * 109.46626 * 299.99828 * 19 17 16 39 39 H 1.08000 * 126.29175 * 359.97438 * 21 20 19 40 40 H 1.08005 * 126.29112 * 180.02562 * 22 21 20 41 41 H 1.08004 * 125.89396 * 180.25240 * 23 22 21 42 42 H 1.08995 * 109.59010 * 173.64490 * 26 16 15 43 43 H 1.09000 * 109.58875 * 294.07113 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.0790 1.2729 0.5435 5 6 1.6496 2.2761 -0.6986 6 7 2.0224 3.4951 -0.3708 7 14 0.4472 2.0132 -2.1039 8 1 -0.9421 2.1630 -1.6012 9 1 0.7003 3.0192 -3.1665 10 1 0.6277 0.6485 -2.6610 11 6 2.1974 -1.2688 0.0006 12 1 3.2692 -1.0702 0.0009 13 6 1.8258 -2.0734 1.2482 14 6 2.6156 -3.3841 1.2661 15 6 2.2461 -4.2147 0.0278 16 7 2.4686 -3.3929 -1.1696 17 6 3.2415 -3.8433 -2.1778 18 8 3.4133 -3.1574 -3.1631 19 6 3.8920 -5.1992 -2.0807 20 6 4.6950 -5.4616 -3.3286 21 6 4.2175 -5.9660 -4.4844 22 6 5.2967 -6.0483 -5.3864 23 6 6.3914 -5.5852 -4.7494 24 7 6.0295 -5.2292 -3.4840 25 1 6.6226 -4.8666 -2.8074 26 6 1.8278 -2.0732 -1.2497 27 1 -0.3634 -0.0395 1.0269 28 1 -0.3633 0.9091 -0.4793 29 1 -0.3634 -0.8695 -0.5478 30 1 1.6726 4.2569 -0.8588 31 1 2.0651 -1.4930 2.1393 32 1 0.7582 -2.2929 1.2341 33 1 3.6834 -3.1656 1.2553 34 1 2.3683 -3.9456 2.1670 35 1 1.1976 -4.5075 0.0803 36 1 2.8743 -5.1045 -0.0178 37 1 3.1229 -5.9645 -1.9762 38 1 4.5505 -5.2248 -1.2124 39 1 3.1956 -6.2541 -4.6823 40 1 5.2540 -6.4106 -6.4030 41 1 7.3842 -5.5120 -5.1682 42 1 2.1797 -1.5494 -2.1384 43 1 0.7457 -2.1948 -1.2992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027686756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:36 Heat of formation + Delta-G solvation = 17.499182 kcal Electronic energy + Delta-G solvation = -23781.070740 eV Core-core repulsion = 20440.966352 eV Total energy + Delta-G solvation = -3340.104388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07727 -40.99143 -38.93887 -36.85098 -34.20553 -33.14760 -32.84326 -31.77724 -30.84747 -28.14897 -27.74922 -25.95087 -25.33591 -22.97274 -21.70070 -21.33827 -20.91854 -19.95658 -18.94901 -18.39442 -18.15033 -17.41950 -16.70855 -16.49957 -15.79377 -15.52504 -15.19529 -14.90878 -14.66237 -14.58399 -14.40554 -14.32461 -14.12463 -13.99182 -13.93242 -13.54509 -13.37360 -13.11459 -13.00556 -12.59419 -12.49729 -12.25761 -12.08712 -11.85796 -11.74714 -11.65016 -11.45681 -10.87108 -10.65077 -9.70880 -9.69043 -8.90959 -8.80015 -8.26859 -5.62682 1.22322 1.28566 1.37230 1.46720 1.64886 1.98231 2.24413 2.34905 2.55258 3.00908 3.32252 3.63022 3.84777 3.98097 4.09786 4.13765 4.22281 4.24692 4.31922 4.46415 4.51796 4.52909 4.63217 4.66843 4.73417 4.76093 4.86508 4.87854 4.92284 4.96908 5.04023 5.17934 5.36097 5.42893 5.43871 5.50027 5.52291 5.86637 6.09434 6.10655 6.24586 6.48426 6.82190 6.91538 7.22641 7.56803 7.96591 8.93262 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018759 B = 0.004295 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.266547 B = 6517.615905 C = 7330.103260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.617 5.617 3 C -0.260 4.260 4 H 0.043 0.957 5 C -0.019 4.019 6 N -0.947 5.947 7 Si 0.945 3.055 8 H -0.266 1.266 9 H -0.311 1.311 10 H -0.269 1.269 11 C 0.166 3.834 12 H 0.042 0.958 13 C -0.123 4.123 14 C -0.124 4.124 15 C 0.101 3.899 16 N -0.607 5.607 17 C 0.502 3.498 18 O -0.589 6.589 19 C -0.057 4.057 20 C 0.019 3.981 21 C -0.210 4.210 22 C -0.229 4.229 23 C -0.012 4.012 24 N -0.552 5.552 25 H 0.422 0.578 26 C 0.106 3.894 27 H 0.034 0.966 28 H 0.024 0.976 29 H 0.060 0.940 30 H 0.264 0.736 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.146 0.854 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.142 0.858 41 H 0.191 0.809 42 H 0.043 0.957 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.204 -25.792 0.635 25.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.341 5.341 3 C -0.390 4.390 4 H 0.060 0.940 5 C -0.216 4.216 6 N -0.592 5.592 7 Si 0.775 3.225 8 H -0.193 1.193 9 H -0.240 1.240 10 H -0.194 1.194 11 C 0.059 3.941 12 H 0.060 0.940 13 C -0.162 4.162 14 C -0.163 4.163 15 C -0.019 4.019 16 N -0.340 5.340 17 C 0.291 3.709 18 O -0.469 6.469 19 C -0.097 4.097 20 C -0.094 4.094 21 C -0.235 4.235 22 C -0.254 4.254 23 C -0.144 4.144 24 N -0.147 5.147 25 H 0.260 0.740 26 C -0.019 4.019 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.142 0.858 37 H 0.163 0.837 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.160 0.840 41 H 0.208 0.792 42 H 0.061 0.939 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.365 -25.219 0.224 25.443 hybrid contribution -0.214 1.338 -0.773 1.560 sum 3.151 -23.881 -0.550 24.094 Atomic orbital electron populations 1.21391 0.83409 0.99243 0.99527 1.44195 1.01570 1.01547 1.86791 1.18708 1.07061 0.88239 1.25013 0.93959 1.26011 1.00873 0.94876 0.99811 1.69973 1.48753 0.98536 1.41890 0.85859 0.79328 0.77176 0.80170 1.19263 1.24039 1.19391 1.20867 0.94923 0.84723 0.93590 0.93953 1.21906 1.00993 0.96400 0.96875 1.21977 1.00047 0.95169 0.99070 1.22271 1.03818 0.93781 0.82078 1.48316 1.48584 1.17594 1.19511 1.21429 0.78354 0.89276 0.81804 1.90732 1.62806 1.60149 1.33233 1.20244 1.00100 0.93566 0.95817 1.19853 0.84464 1.07124 0.97988 1.20873 0.99498 1.09071 0.94019 1.21164 0.93286 1.10038 1.00882 1.22280 1.01156 1.05869 0.85106 1.41992 1.08502 1.50893 1.13334 0.73958 1.21960 0.97081 0.83564 0.99328 0.94741 0.95735 0.92180 0.92710 0.92971 0.91115 0.92100 0.87282 0.89277 0.85845 0.83656 0.85016 0.85131 0.83983 0.79194 0.93878 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.51 8.55 127.77 1.09 5.60 16 2 N -0.62 -29.29 2.41 -702.32 -1.69 -30.98 16 3 C -0.26 -15.22 9.85 84.04 0.83 -14.39 16 4 H 0.04 2.73 8.06 -2.91 -0.02 2.71 16 5 C -0.02 -1.15 5.31 84.86 0.45 -0.70 16 6 N -0.95 -60.68 13.97 21.65 0.30 -60.38 16 7 Si 0.95 48.56 24.94 68.60 1.71 50.27 16 8 H -0.27 -12.63 6.67 99.48 0.66 -11.97 16 9 H -0.31 -16.34 7.11 99.48 0.71 -15.63 16 10 H -0.27 -13.68 7.11 99.48 0.71 -12.97 16 11 C 0.17 6.41 2.74 45.07 0.12 6.53 16 12 H 0.04 1.85 7.89 -2.39 -0.02 1.84 16 13 C -0.12 -3.42 5.14 30.62 0.16 -3.26 16 14 C -0.12 -2.18 6.10 30.82 0.19 -2.00 16 15 C 0.10 1.53 6.37 86.51 0.55 2.08 16 16 N -0.61 -16.15 2.97 -818.09 -2.43 -18.58 16 17 C 0.50 14.47 7.69 87.65 0.67 15.15 16 18 O -0.59 -24.37 15.45 -3.03 -0.05 -24.42 16 19 C -0.06 -0.99 4.58 29.10 0.13 -0.85 16 20 C 0.02 0.44 5.66 41.08 0.23 0.67 16 21 C -0.21 -5.33 10.76 22.14 0.24 -5.09 16 22 C -0.23 -5.39 10.86 22.14 0.24 -5.15 16 23 C -0.01 -0.25 11.94 83.21 0.99 0.74 16 24 N -0.55 -11.07 6.07 -182.77 -1.11 -12.18 16 25 H 0.42 6.19 8.96 -92.70 -0.83 5.36 16 26 C 0.11 3.84 5.78 86.36 0.50 4.34 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.02 1.13 3.10 -2.38 -0.01 1.12 16 29 H 0.06 2.12 6.35 -2.39 -0.02 2.11 16 30 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.81 7.71 -2.39 -0.02 1.79 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.12 0.87 5.93 -2.38 -0.01 0.86 16 37 H 0.15 1.54 7.93 -2.39 -0.02 1.53 16 38 H 0.13 1.35 7.70 -2.38 -0.02 1.34 16 39 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 41 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 42 H 0.04 1.98 7.01 -2.39 -0.02 1.97 16 43 H 0.07 2.33 6.49 -2.39 -0.02 2.32 16 Total: -1.00 -83.61 338.37 3.28 -80.33 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.14 Total: 12.28 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 6.40 Total: 3.66 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -4.93 Total: -122.12 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 1.71 Total: 50.27 kcal Total: -83.61 3.28 -80.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027686756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.828 kcal (2) G-P(sol) polarization free energy of solvation -83.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds