Wall clock time and date at job start Tue Mar 31 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47320 * 2 1 4 4 C 1.35532 * 125.67609 * 256.27932 * 3 2 1 5 5 C 1.35450 * 108.87185 * 180.02562 * 4 3 2 6 6 C 1.39841 * 107.86218 * 359.74127 * 5 4 3 7 7 C 1.37649 * 125.67771 * 76.29707 * 3 2 1 8 8 C 1.46678 * 126.23216 * 359.97438 * 7 3 2 9 9 O 1.21695 * 119.99995 * 176.00223 * 8 7 3 10 10 N 1.34775 * 120.00287 * 356.00296 * 8 7 3 11 11 C 1.46501 * 120.00444 * 184.72499 * 10 8 7 12 12 C 1.52996 * 109.47096 * 274.18886 * 11 10 8 13 13 H 1.09003 * 110.00069 * 62.46298 * 12 11 10 14 14 C 1.54324 * 109.88295 * 183.55869 * 12 11 10 15 15 C 1.55157 * 102.94487 * 141.60889 * 14 12 11 16 16 C 1.55135 * 101.48352 * 324.33324 * 15 14 12 17 17 N 1.47023 * 109.88029 * 301.36525 * 12 11 10 18 18 C 1.36940 * 125.64758 * 61.61245 * 17 12 11 19 19 H 1.08002 * 119.99308 * 227.50971 * 18 17 12 20 20 C 1.38807 * 120.00026 * 47.50985 * 18 17 12 21 21 N 1.31621 * 119.99479 * 192.70916 * 20 18 17 22 22 Si 1.86792 * 120.00498 * 12.70667 * 20 18 17 23 23 H 1.48501 * 109.47234 * 265.07368 * 22 20 18 24 24 H 1.48501 * 109.47484 * 145.07086 * 22 20 18 25 25 H 1.48510 * 109.47082 * 25.07022 * 22 20 18 26 26 H 1.08995 * 109.47449 * 66.72166 * 1 2 3 27 27 H 1.08998 * 109.47513 * 186.73002 * 1 2 3 28 28 H 1.09007 * 109.46631 * 306.72201 * 1 2 3 29 29 H 1.08999 * 109.46472 * 240.00006 * 2 1 3 30 30 H 1.08998 * 109.47092 * 120.00436 * 2 1 3 31 31 H 1.07999 * 125.56691 * 359.97438 * 4 3 2 32 32 H 1.07997 * 126.07512 * 180.02562 * 5 4 3 33 33 H 1.08002 * 126.45995 * 180.30142 * 6 5 4 34 34 H 0.97007 * 119.99943 * 4.72129 * 10 8 7 35 35 H 1.08997 * 109.46901 * 154.18375 * 11 10 8 36 36 H 1.09008 * 109.46462 * 34.18291 * 11 10 8 37 37 H 1.09004 * 110.71827 * 259.97379 * 14 12 11 38 38 H 1.09000 * 110.72122 * 23.24739 * 14 12 11 39 39 H 1.08994 * 111.00462 * 82.56761 * 15 14 12 40 40 H 1.08999 * 111.00741 * 206.42812 * 15 14 12 41 41 H 1.09001 * 110.49643 * 278.45378 * 16 15 14 42 42 H 1.08998 * 110.34324 * 156.05779 * 16 15 14 43 43 H 0.97005 * 120.00249 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.5281 2.0394 -1.0695 5 6 2.8733 3.2926 -0.6890 6 6 2.5641 3.4294 0.6679 7 6 2.0363 2.2264 1.0863 8 6 1.5726 1.9073 2.4408 9 8 1.7080 2.7190 3.3373 10 7 0.9966 0.7151 2.6925 11 6 0.4402 0.4357 4.0187 12 6 1.5465 -0.0905 4.9352 13 1 2.3177 0.6692 5.0629 14 6 0.9535 -0.4721 6.3079 15 6 1.7384 -1.7576 6.6804 16 6 1.9089 -2.4285 5.2920 17 7 2.1350 -1.3088 4.3601 18 6 2.7812 -1.3910 3.1555 19 1 2.5346 -2.1827 2.4635 20 6 3.7530 -0.4569 2.8240 21 7 4.1945 -0.3776 1.5866 22 14 4.4340 0.6875 4.1338 23 1 3.6906 1.9726 4.1034 24 1 5.8731 0.9416 3.8695 25 1 4.2798 0.0579 5.4700 26 1 -0.3634 0.4061 -0.9439 27 1 -0.3634 -1.0205 0.1204 28 1 -0.3633 0.6145 0.8238 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.6414 1.6310 -2.0629 32 1 3.3059 4.0530 -1.3222 33 1 2.7125 4.3106 1.2744 34 1 0.9502 0.0420 1.9955 35 1 -0.3468 -0.3133 3.9320 36 1 0.0253 1.3520 4.4389 37 1 1.1349 0.3159 7.0389 38 1 -0.1126 -0.6824 6.2225 39 1 2.7047 -1.5117 7.1204 40 1 1.1560 -2.3910 7.3494 41 1 1.0056 -2.9736 5.0180 42 1 2.7696 -3.0972 5.2974 43 1 4.8739 0.2749 1.3549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028317798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:32 Heat of formation + Delta-G solvation = 50.471845 kcal Electronic energy + Delta-G solvation = -25751.153070 eV Core-core repulsion = 22412.478483 eV Total energy + Delta-G solvation = -3338.674586 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80299 -38.68993 -37.32095 -34.60133 -32.87712 -32.58715 -29.94086 -29.65543 -28.89332 -28.11880 -25.02799 -23.74796 -23.01405 -21.31885 -20.43002 -19.95367 -19.66865 -19.04182 -17.20987 -16.70726 -15.77882 -15.21683 -14.99495 -14.87354 -14.53268 -14.17961 -13.57895 -13.40615 -13.17713 -12.96912 -12.67330 -12.27043 -12.17402 -11.97172 -11.95186 -11.82266 -11.64854 -11.47001 -11.14900 -11.06940 -10.74873 -10.61100 -10.49724 -10.36576 -10.26936 -9.87999 -9.45205 -9.23240 -8.59755 -8.07217 -8.04985 -7.48965 -6.60426 -6.09477 -3.62993 2.27490 3.36666 3.48459 3.51573 3.61447 3.71004 4.05678 4.33344 4.60018 5.04136 5.17318 5.22690 5.32271 5.38947 5.42778 5.50833 5.58997 5.67332 5.72707 5.80480 5.91507 6.04572 6.06096 6.09219 6.15025 6.18471 6.24036 6.34147 6.43400 6.47839 6.56378 6.71319 6.72281 6.81722 6.87240 6.97660 7.31957 7.42738 7.68170 7.89784 7.99866 8.25740 8.44501 8.81700 9.09894 9.61335 10.29119 11.01757 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.007549 C = 0.007275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.467599 B = 3708.088804 C = 3847.659250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.076 3.924 3 N -0.394 5.394 4 C 0.011 3.989 5 C -0.220 4.220 6 C -0.138 4.138 7 C -0.026 4.026 8 C 0.587 3.413 9 O -0.551 6.551 10 N -0.703 5.703 11 C 0.115 3.885 12 C 0.126 3.874 13 H 0.045 0.955 14 C -0.126 4.126 15 C -0.136 4.136 16 C 0.127 3.873 17 N -0.601 5.601 18 C -0.268 4.268 19 H 0.073 0.927 20 C 0.063 3.937 21 N -0.892 5.892 22 Si 0.855 3.145 23 H -0.243 1.243 24 H -0.308 1.308 25 H -0.275 1.275 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.143 0.857 31 H 0.157 0.843 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.407 0.593 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.023 0.977 42 H 0.045 0.955 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 -0.217 -2.037 8.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.046 4.046 3 N -0.066 5.066 4 C -0.125 4.125 5 C -0.245 4.245 6 C -0.164 4.164 7 C -0.140 4.140 8 C 0.375 3.625 9 O -0.430 6.430 10 N -0.358 5.358 11 C -0.012 4.012 12 C 0.020 3.980 13 H 0.063 0.937 14 C -0.164 4.164 15 C -0.174 4.174 16 C 0.003 3.997 17 N -0.328 5.328 18 C -0.395 4.395 19 H 0.091 0.909 20 C -0.141 4.141 21 N -0.531 5.531 22 Si 0.684 3.316 23 H -0.167 1.167 24 H -0.237 1.237 25 H -0.200 1.200 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.160 0.840 31 H 0.175 0.825 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.250 0.750 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.041 0.959 42 H 0.064 0.936 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.116 0.014 -1.584 8.269 hybrid contribution 0.822 0.260 0.278 0.906 sum -7.294 0.274 -1.306 7.415 Atomic orbital electron populations 1.22417 0.95608 1.03137 1.02880 1.22385 0.93579 0.80628 1.07965 1.43999 1.44356 1.10680 1.07608 1.21756 1.04645 0.93638 0.92456 1.20617 1.10799 0.97148 0.95899 1.21072 1.03417 0.96631 0.95284 1.20400 1.13151 0.92222 0.88220 1.16961 0.77350 0.82152 0.86051 1.90755 1.57059 1.50027 1.45169 1.46217 1.59061 1.15716 1.14767 1.21817 0.95937 0.99262 0.84171 1.21721 0.93926 0.91424 0.90970 0.93718 1.22527 0.99258 0.97771 0.96883 1.22789 0.99688 0.96862 0.98093 1.21810 0.97976 0.91873 0.88089 1.44579 1.65160 1.03529 1.19560 1.18254 1.14966 1.14981 0.91334 0.90942 1.25525 0.94696 0.98120 0.95752 1.69635 1.30682 1.36002 1.16801 0.87181 0.77649 0.83602 0.83153 1.16701 1.23658 1.20039 0.92244 0.90536 0.91506 0.89148 0.84005 0.82519 0.85001 0.84700 0.75004 0.91351 0.91667 0.91960 0.91537 0.91938 0.92049 0.95891 0.93643 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 9.26 37.16 0.34 -2.20 16 2 C 0.08 1.30 5.76 -4.04 -0.02 1.28 16 3 N -0.39 -7.44 2.78 -112.87 -0.31 -7.75 16 4 C 0.01 0.19 11.35 -16.91 -0.19 0.00 16 5 C -0.22 -3.84 10.81 -39.98 -0.43 -4.27 16 6 C -0.14 -2.81 10.66 -39.12 -0.42 -3.23 16 7 C -0.03 -0.56 6.83 -81.98 -0.56 -1.12 16 8 C 0.59 13.58 5.72 -12.85 -0.07 13.50 16 9 O -0.55 -14.19 14.82 5.19 0.08 -14.12 16 10 N -0.70 -14.65 2.41 -61.62 -0.15 -14.80 16 11 C 0.11 2.22 5.52 -4.04 -0.02 2.20 16 12 C 0.13 2.68 2.59 -66.95 -0.17 2.50 16 13 H 0.05 1.12 4.15 -51.93 -0.22 0.91 16 14 C -0.13 -2.14 6.47 -24.90 -0.16 -2.30 16 15 C -0.14 -2.28 7.10 -24.46 -0.17 -2.45 16 16 C 0.13 2.46 7.24 -2.41 -0.02 2.44 16 17 N -0.60 -13.55 2.46 -162.43 -0.40 -13.95 16 18 C -0.27 -6.73 7.47 -15.06 -0.11 -6.85 16 19 H 0.07 1.94 8.06 -52.49 -0.42 1.51 16 20 C 0.06 1.67 3.95 -17.43 -0.07 1.60 16 21 N -0.89 -23.86 12.57 55.49 0.70 -23.16 16 22 Si 0.86 23.07 23.73 -169.99 -4.03 19.03 16 23 H -0.24 -6.87 5.08 56.52 0.29 -6.58 16 24 H -0.31 -8.65 7.11 56.52 0.40 -8.25 16 25 H -0.27 -7.46 7.04 56.52 0.40 -7.06 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.02 6.49 -51.93 -0.34 0.68 16 29 H 0.09 1.41 8.09 -51.93 -0.42 0.99 16 30 H 0.14 2.94 3.60 -51.93 -0.19 2.76 16 31 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.14 2.68 8.06 -52.49 -0.42 2.26 16 34 H 0.41 8.10 2.62 -40.82 -0.11 8.00 16 35 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.07 1.24 7.62 -51.92 -0.40 0.84 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.97 7.82 -51.93 -0.41 0.56 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -30.54 324.78 -7.70 -38.25 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.39 Total: 10.51 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.08 Total: 1.10 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.16 Total: -59.67 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.08 Total: -14.12 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.03 Total: 19.03 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.54 -7.70 -38.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028317798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.719 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds