Wall clock time and date at job start Tue Mar 31 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47320 * 2 1 4 4 C 1.35532 * 125.67609 * 256.27932 * 3 2 1 5 5 C 1.35450 * 108.87185 * 180.02562 * 4 3 2 6 6 C 1.39841 * 107.86218 * 359.74127 * 5 4 3 7 7 C 1.37649 * 125.67771 * 76.29707 * 3 2 1 8 8 C 1.46678 * 126.23216 * 359.97438 * 7 3 2 9 9 O 1.21695 * 119.99995 * 176.00223 * 8 7 3 10 10 N 1.34775 * 120.00287 * 356.00296 * 8 7 3 11 11 C 1.46501 * 120.00444 * 184.72499 * 10 8 7 12 12 C 1.52996 * 109.47096 * 274.18886 * 11 10 8 13 13 H 1.09003 * 110.00069 * 62.46298 * 12 11 10 14 14 C 1.54324 * 109.88295 * 183.55869 * 12 11 10 15 15 C 1.55157 * 102.94487 * 141.60889 * 14 12 11 16 16 C 1.55135 * 101.48352 * 324.33324 * 15 14 12 17 17 N 1.47023 * 109.88029 * 301.36525 * 12 11 10 18 18 C 1.36940 * 125.64758 * 61.61245 * 17 12 11 19 19 H 1.08002 * 119.99308 * 227.50971 * 18 17 12 20 20 C 1.38807 * 120.00026 * 47.50985 * 18 17 12 21 21 N 1.31621 * 119.99479 * 192.70916 * 20 18 17 22 22 Si 1.86792 * 120.00498 * 12.70667 * 20 18 17 23 23 H 1.48501 * 109.47234 * 265.07368 * 22 20 18 24 24 H 1.48501 * 109.47484 * 145.07086 * 22 20 18 25 25 H 1.48510 * 109.47082 * 25.07022 * 22 20 18 26 26 H 1.08995 * 109.47449 * 66.72166 * 1 2 3 27 27 H 1.08998 * 109.47513 * 186.73002 * 1 2 3 28 28 H 1.09007 * 109.46631 * 306.72201 * 1 2 3 29 29 H 1.08999 * 109.46472 * 240.00006 * 2 1 3 30 30 H 1.08998 * 109.47092 * 120.00436 * 2 1 3 31 31 H 1.07999 * 125.56691 * 359.97438 * 4 3 2 32 32 H 1.07997 * 126.07512 * 180.02562 * 5 4 3 33 33 H 1.08002 * 126.45995 * 180.30142 * 6 5 4 34 34 H 0.97007 * 119.99943 * 4.72129 * 10 8 7 35 35 H 1.08997 * 109.46901 * 154.18375 * 11 10 8 36 36 H 1.09008 * 109.46462 * 34.18291 * 11 10 8 37 37 H 1.09004 * 110.71827 * 259.97379 * 14 12 11 38 38 H 1.09000 * 110.72122 * 23.24739 * 14 12 11 39 39 H 1.08994 * 111.00462 * 82.56761 * 15 14 12 40 40 H 1.08999 * 111.00741 * 206.42812 * 15 14 12 41 41 H 1.09001 * 110.49643 * 278.45378 * 16 15 14 42 42 H 1.08998 * 110.34324 * 156.05779 * 16 15 14 43 43 H 0.97005 * 120.00249 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.5281 2.0394 -1.0695 5 6 2.8733 3.2926 -0.6890 6 6 2.5641 3.4294 0.6679 7 6 2.0363 2.2264 1.0863 8 6 1.5726 1.9073 2.4408 9 8 1.7080 2.7190 3.3373 10 7 0.9966 0.7151 2.6925 11 6 0.4402 0.4357 4.0187 12 6 1.5465 -0.0905 4.9352 13 1 2.3177 0.6692 5.0629 14 6 0.9535 -0.4721 6.3079 15 6 1.7384 -1.7576 6.6804 16 6 1.9089 -2.4285 5.2920 17 7 2.1350 -1.3088 4.3601 18 6 2.7812 -1.3910 3.1555 19 1 2.5346 -2.1827 2.4635 20 6 3.7530 -0.4569 2.8240 21 7 4.1945 -0.3776 1.5866 22 14 4.4340 0.6875 4.1338 23 1 3.6906 1.9726 4.1034 24 1 5.8731 0.9416 3.8695 25 1 4.2798 0.0579 5.4700 26 1 -0.3634 0.4061 -0.9439 27 1 -0.3634 -1.0205 0.1204 28 1 -0.3633 0.6145 0.8238 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.6414 1.6310 -2.0629 32 1 3.3059 4.0530 -1.3222 33 1 2.7125 4.3106 1.2744 34 1 0.9502 0.0420 1.9955 35 1 -0.3468 -0.3133 3.9320 36 1 0.0253 1.3520 4.4389 37 1 1.1349 0.3159 7.0389 38 1 -0.1126 -0.6824 6.2225 39 1 2.7047 -1.5117 7.1204 40 1 1.1560 -2.3910 7.3494 41 1 1.0056 -2.9736 5.0180 42 1 2.7696 -3.0972 5.2974 43 1 4.8739 0.2749 1.3549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028317798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:31 Heat of formation + Delta-G solvation = 31.990506 kcal Electronic energy + Delta-G solvation = -25751.954481 eV Core-core repulsion = 22412.478483 eV Total energy + Delta-G solvation = -3339.475997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27380 -40.32086 -38.98289 -36.10468 -34.56981 -34.33266 -31.69326 -31.21674 -30.20586 -29.60944 -26.67186 -25.46758 -24.31625 -22.92400 -21.91411 -21.48511 -21.24917 -20.63215 -18.76356 -18.49021 -17.52092 -16.88902 -16.66074 -16.42102 -16.04955 -15.60693 -15.32766 -15.18952 -14.76551 -14.49503 -14.31935 -13.80626 -13.75032 -13.58472 -13.39731 -13.11882 -12.99775 -12.94210 -12.77825 -12.60111 -12.47111 -12.40291 -12.04814 -11.91843 -11.82852 -11.76981 -11.26244 -10.99114 -10.59362 -9.81429 -9.50224 -8.96141 -8.45940 -8.18642 -5.62701 0.70190 1.27707 1.38896 1.52349 1.95295 2.10501 2.43180 2.47540 2.69802 3.13767 3.47643 3.91090 3.92698 3.99749 4.08295 4.16640 4.18167 4.30846 4.41936 4.51534 4.54289 4.57736 4.66366 4.73683 4.78094 4.83845 4.91693 4.98573 5.01116 5.14514 5.19202 5.25553 5.27369 5.35081 5.41053 5.49387 5.71047 5.96205 5.98884 6.18105 6.22571 6.55472 6.80862 6.95425 7.42258 7.61253 8.35369 8.93297 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.007549 C = 0.007275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.467599 B = 3708.088804 C = 3847.659250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 N -0.393 5.393 4 C 0.023 3.977 5 C -0.222 4.222 6 C -0.159 4.159 7 C -0.066 4.066 8 C 0.580 3.420 9 O -0.593 6.593 10 N -0.697 5.697 11 C 0.111 3.889 12 C 0.118 3.882 13 H 0.000 1.000 14 C -0.119 4.119 15 C -0.127 4.127 16 C 0.122 3.878 17 N -0.617 5.617 18 C -0.238 4.238 19 H 0.064 0.936 20 C 0.047 3.953 21 N -0.896 5.896 22 Si 0.882 3.118 23 H -0.268 1.268 24 H -0.331 1.331 25 H -0.282 1.282 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.200 0.800 32 H 0.162 0.838 33 H 0.125 0.875 34 H 0.412 0.588 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.043 0.957 40 H 0.104 0.896 41 H 0.049 0.951 42 H 0.034 0.966 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 -2.000 -2.852 10.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.050 4.050 3 N -0.065 5.065 4 C -0.114 4.114 5 C -0.246 4.246 6 C -0.186 4.186 7 C -0.179 4.179 8 C 0.370 3.630 9 O -0.476 6.476 10 N -0.351 5.351 11 C -0.014 4.014 12 C 0.011 3.989 13 H 0.018 0.982 14 C -0.157 4.157 15 C -0.165 4.165 16 C -0.002 4.002 17 N -0.344 5.344 18 C -0.367 4.367 19 H 0.081 0.919 20 C -0.155 4.155 21 N -0.537 5.537 22 Si 0.715 3.285 23 H -0.194 1.194 24 H -0.262 1.262 25 H -0.208 1.208 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.068 0.932 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.217 0.783 32 H 0.180 0.820 33 H 0.143 0.857 34 H 0.256 0.744 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.062 0.938 40 H 0.122 0.878 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.163 -1.817 -2.379 10.595 hybrid contribution 1.434 0.786 0.534 1.720 sum -8.729 -1.031 -1.845 8.981 Atomic orbital electron populations 1.22340 0.93026 1.04296 1.03302 1.22452 0.95722 0.79637 1.07157 1.44161 1.44129 1.10998 1.07263 1.22502 1.02225 0.93237 0.93452 1.20973 1.10509 0.98374 0.94715 1.21311 1.03934 0.96354 0.96991 1.20352 1.15493 0.93505 0.88584 1.17278 0.77023 0.82303 0.86440 1.90708 1.59010 1.51337 1.46555 1.46244 1.58226 1.15125 1.15466 1.21947 0.96057 1.00156 0.83272 1.21772 0.93445 0.89808 0.93827 0.98211 1.22553 1.00999 0.98010 0.94143 1.22758 0.99530 0.96999 0.97189 1.21982 0.98541 0.90864 0.88821 1.44768 1.65136 1.05067 1.19401 1.18142 1.13287 1.13242 0.92066 0.91861 1.25606 0.95862 0.98511 0.95486 1.69671 1.31286 1.36124 1.16611 0.86840 0.75660 0.82812 0.83201 1.19396 1.26178 1.20813 0.90196 0.88409 0.93177 0.87235 0.87408 0.78338 0.82027 0.85729 0.74404 0.88017 0.91663 0.91386 0.88062 0.93798 0.87803 0.93341 0.94748 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.36 9.26 71.98 0.67 -3.69 16 2 C 0.07 2.32 5.76 86.38 0.50 2.82 16 3 N -0.39 -14.42 2.78 -511.03 -1.42 -15.84 16 4 C 0.02 0.71 11.35 83.48 0.95 1.66 16 5 C -0.22 -7.44 10.81 22.01 0.24 -7.21 16 6 C -0.16 -6.63 10.66 22.57 0.24 -6.39 16 7 C -0.07 -2.88 6.83 40.35 0.28 -2.61 16 8 C 0.58 27.62 5.72 86.45 0.49 28.11 16 9 O -0.59 -32.13 14.82 -4.33 -0.06 -32.19 16 10 N -0.70 -29.00 2.41 -467.08 -1.13 -30.12 16 11 C 0.11 4.19 5.52 86.38 0.48 4.67 16 12 C 0.12 4.90 2.59 45.34 0.12 5.02 16 13 H 0.00 0.02 4.15 -2.39 -0.01 0.01 16 14 C -0.12 -3.69 6.47 31.78 0.21 -3.49 16 15 C -0.13 -3.83 7.10 32.07 0.23 -3.60 16 16 C 0.12 4.36 7.24 86.93 0.63 4.99 16 17 N -0.62 -27.00 2.46 -667.81 -1.65 -28.65 16 18 C -0.24 -11.86 7.47 84.03 0.63 -11.24 16 19 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 20 C 0.05 2.51 3.95 84.86 0.34 2.85 16 21 N -0.90 -48.39 12.57 21.65 0.27 -48.12 16 22 Si 0.88 49.38 23.73 68.60 1.63 51.00 16 23 H -0.27 -16.12 5.08 99.48 0.51 -15.61 16 24 H -0.33 -19.47 7.11 99.48 0.71 -18.76 16 25 H -0.28 -15.79 7.04 99.48 0.70 -15.09 16 26 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 1.45 6.49 -2.38 -0.02 1.43 16 29 H 0.11 3.10 8.09 -2.39 -0.02 3.08 16 30 H 0.11 4.37 3.60 -2.39 -0.01 4.37 16 31 H 0.20 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 33 H 0.12 5.26 8.06 -2.91 -0.02 5.24 16 34 H 0.41 16.12 2.62 -92.70 -0.24 15.88 16 35 H 0.10 3.11 8.10 -2.39 -0.02 3.09 16 36 H 0.07 2.45 7.62 -2.38 -0.02 2.43 16 37 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.10 2.47 7.82 -2.39 -0.02 2.45 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -69.88 324.78 4.18 -65.69 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.56 Total: 26.33 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 5.98 Total: 11.90 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -3.92 Total: -122.73 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.06 Total: -32.19 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 1.63 Total: 51.00 kcal Total: -69.88 4.18 -65.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028317798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.684 kcal (2) G-P(sol) polarization free energy of solvation -69.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds