Wall clock time and date at job start Tue Mar 31 2020 06:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47259 * 2 1 4 4 C 1.35532 * 125.67441 * 262.43485 * 3 2 1 5 5 C 1.35455 * 108.86792 * 180.02562 * 4 3 2 6 6 C 1.39840 * 107.86522 * 359.73600 * 5 4 3 7 7 C 1.37648 * 125.67598 * 82.45817 * 3 2 1 8 8 C 1.46679 * 126.23680 * 359.97438 * 7 3 2 9 9 O 1.21690 * 120.00206 * 174.12326 * 8 7 3 10 10 N 1.34777 * 119.99741 * 354.12212 * 8 7 3 11 11 C 1.46502 * 119.99796 * 175.47616 * 10 8 7 12 12 C 1.53003 * 109.46728 * 184.91467 * 11 10 8 13 13 H 1.09000 * 110.00050 * 53.20503 * 12 11 10 14 14 C 1.54320 * 109.88392 * 292.10113 * 12 11 10 15 15 C 1.55280 * 103.00759 * 218.47369 * 14 12 11 16 16 C 1.54910 * 101.52921 * 35.35737 * 15 14 12 17 17 N 1.47026 * 109.87853 * 174.29254 * 12 11 10 18 18 C 1.36938 * 125.64920 * 298.33960 * 17 12 11 19 19 H 1.07998 * 120.00329 * 350.05286 * 18 17 12 20 20 C 1.38820 * 119.99626 * 170.04856 * 18 17 12 21 21 N 1.31610 * 120.00044 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99646 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47243 * 59.99997 * 22 20 18 24 24 H 1.48498 * 109.47107 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46937 * 300.00131 * 22 20 18 26 26 H 1.09006 * 109.46909 * 300.00248 * 1 2 3 27 27 H 1.09000 * 109.47137 * 59.99867 * 1 2 3 28 28 H 1.08998 * 109.47009 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47503 * 239.99903 * 2 1 3 30 30 H 1.09000 * 109.47137 * 120.00133 * 2 1 3 31 31 H 1.07989 * 125.56838 * 0.03750 * 4 3 2 32 32 H 1.08001 * 126.06911 * 180.02562 * 5 4 3 33 33 H 1.07998 * 126.45861 * 180.26527 * 6 5 4 34 34 H 0.97005 * 119.99882 * 355.47896 * 10 8 7 35 35 H 1.08999 * 109.46916 * 64.91927 * 11 10 8 36 36 H 1.08996 * 109.46987 * 304.91778 * 11 10 8 37 37 H 1.09004 * 110.72101 * 336.75411 * 14 12 11 38 38 H 1.09000 * 110.72049 * 100.03253 * 14 12 11 39 39 H 1.09003 * 110.95504 * 277.34018 * 15 14 12 40 40 H 1.08994 * 111.10074 * 153.45157 * 15 14 12 41 41 H 1.08993 * 110.36813 * 204.23482 * 16 15 14 42 42 H 1.09002 * 110.36031 * 82.02502 * 16 15 14 43 43 H 0.97005 * 119.99872 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4185 2.0781 -1.0914 5 6 2.8027 3.3177 -0.7031 6 6 2.6324 3.4053 0.6821 7 6 2.1476 2.1870 1.1085 8 6 1.8228 1.8189 2.4907 9 8 2.0810 2.5841 3.4009 10 7 1.2382 0.6330 2.7525 11 6 1.0040 0.2222 4.1391 12 6 0.4464 -1.2024 4.1615 13 1 1.0986 -1.8670 3.5949 14 6 -0.9735 -1.2199 3.5574 15 6 -1.7250 -2.2355 4.4601 16 6 -1.0810 -1.9576 5.8414 17 7 0.3360 -1.6743 5.5496 18 6 1.3771 -1.8259 6.4262 19 1 2.3951 -1.7473 6.0744 20 6 1.1238 -2.0806 7.7671 21 7 -0.1168 -2.1768 8.1958 22 14 2.5440 -2.2881 8.9628 23 1 3.3608 -1.0481 8.9812 24 1 2.0109 -2.5505 10.3237 25 1 3.3892 -3.4313 8.5338 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.4291 1.7061 -2.1051 32 1 3.1704 4.1010 -1.3493 33 1 2.8434 4.2644 1.3016 34 1 0.9727 0.0516 2.0228 35 1 0.2874 0.9002 4.6027 36 1 1.9434 0.2535 4.6909 37 1 -1.4332 -0.2338 3.6239 38 1 -0.9487 -1.5661 2.5241 39 1 -1.5332 -3.2593 4.1386 40 1 -2.7947 -2.0274 4.4788 41 1 -1.1682 -2.8338 6.4838 42 1 -1.5513 -1.0944 6.3123 43 1 -0.2937 -2.3552 9.1328 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028317799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:36 Heat of formation + Delta-G solvation = 45.126975 kcal Electronic energy + Delta-G solvation = -23896.700885 eV Core-core repulsion = 20557.794528 eV Total energy + Delta-G solvation = -3338.906357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.55006 -38.96946 -37.58355 -35.27284 -33.62115 -32.50216 -30.11240 -29.63857 -29.36046 -28.26799 -25.02398 -24.12941 -23.81741 -21.94547 -20.62480 -20.34267 -19.98334 -19.21544 -17.87680 -16.76599 -15.87357 -15.73733 -15.50286 -15.00989 -14.79773 -14.45512 -14.23948 -13.87047 -13.80578 -13.13378 -12.90373 -12.64915 -12.46311 -12.32303 -12.26125 -12.11025 -11.94004 -11.80193 -11.60577 -11.38385 -10.99274 -10.79277 -10.27588 -10.17068 -10.00711 -9.91765 -9.77524 -9.66223 -8.87136 -8.77813 -8.61644 -8.22471 -6.90892 -5.76632 -3.14175 1.50731 2.59568 2.71096 3.38242 3.43598 3.44969 3.47355 3.55796 4.25364 4.46868 4.55659 4.64662 4.78150 4.97952 5.17278 5.27679 5.30504 5.33551 5.38535 5.45949 5.48535 5.57690 5.73439 5.74744 5.96576 6.05224 6.06882 6.14918 6.16246 6.40121 6.49101 6.56108 6.64099 6.69269 6.74871 6.90576 7.00663 7.08953 7.50905 7.55378 7.73886 7.77855 8.23734 8.43054 9.15290 9.75727 10.40837 11.33324 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020841 B = 0.004214 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.211264 B = 6642.808434 C = 7506.949836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.081 3.919 3 N -0.427 5.427 4 C 0.013 3.987 5 C -0.212 4.212 6 C -0.115 4.115 7 C -0.049 4.049 8 C 0.579 3.421 9 O -0.530 6.530 10 N -0.733 5.733 11 C 0.105 3.895 12 C 0.153 3.847 13 H 0.035 0.965 14 C -0.129 4.129 15 C -0.148 4.148 16 C 0.168 3.832 17 N -0.588 5.588 18 C -0.234 4.234 19 H 0.076 0.924 20 C -0.002 4.002 21 N -0.917 5.917 22 Si 0.912 3.088 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.284 1.284 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.166 0.834 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.393 0.607 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.022 0.978 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.109 3.241 -20.401 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.041 4.041 3 N -0.104 5.104 4 C -0.121 4.121 5 C -0.236 4.236 6 C -0.141 4.141 7 C -0.161 4.161 8 C 0.366 3.634 9 O -0.407 6.407 10 N -0.390 5.390 11 C -0.020 4.020 12 C 0.044 3.956 13 H 0.053 0.947 14 C -0.167 4.167 15 C -0.186 4.186 16 C 0.043 3.957 17 N -0.312 5.312 18 C -0.362 4.362 19 H 0.094 0.906 20 C -0.199 4.199 21 N -0.564 5.564 22 Si 0.742 3.258 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.211 1.211 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.183 0.817 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.233 0.767 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.040 0.960 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.048 3.309 -19.386 19.667 hybrid contribution 0.629 -0.280 0.251 0.733 sum 0.581 3.028 -19.135 19.382 Atomic orbital electron populations 1.22381 0.93605 1.04108 1.04060 1.22175 0.96186 0.80504 1.05202 1.44252 1.48286 1.11302 1.06573 1.21938 1.05186 0.93369 0.91655 1.20843 1.10108 0.97384 0.95292 1.21301 1.01800 0.96078 0.94944 1.20676 1.14856 0.93531 0.87026 1.17142 0.78019 0.81895 0.86369 1.90841 1.54112 1.50591 1.45131 1.46728 1.61833 1.19746 1.10656 1.22311 1.02009 0.97755 0.79912 1.21102 0.94155 0.91233 0.89127 0.94727 1.22679 0.96368 0.99785 0.97865 1.23029 0.98419 0.98001 0.99189 1.21579 0.82568 1.00512 0.91054 1.44492 1.04215 1.74846 1.07690 1.18968 0.86289 1.42919 0.88066 0.90575 1.24843 0.96607 1.01664 0.96745 1.69910 1.17029 1.54596 1.14845 0.86201 0.81226 0.78085 0.80284 1.20923 1.21508 1.21082 0.91030 0.91050 0.89651 0.87977 0.88617 0.81690 0.84090 0.83614 0.76727 0.91747 0.90898 0.91767 0.92607 0.92256 0.92251 0.89840 0.95980 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.52 37.16 0.35 -1.02 16 2 C 0.08 0.66 5.97 -4.04 -0.02 0.64 16 3 N -0.43 -4.71 2.76 -112.87 -0.31 -5.02 16 4 C 0.01 0.12 11.36 -16.91 -0.19 -0.07 16 5 C -0.21 -2.27 10.81 -39.98 -0.43 -2.70 16 6 C -0.11 -1.57 10.66 -39.12 -0.42 -1.99 16 7 C -0.05 -0.72 6.88 -81.98 -0.56 -1.28 16 8 C 0.58 10.27 7.77 -12.85 -0.10 10.17 16 9 O -0.53 -11.52 16.90 5.20 0.09 -11.43 16 10 N -0.73 -11.80 4.82 -61.62 -0.30 -12.10 16 11 C 0.11 2.07 5.11 -4.04 -0.02 2.05 16 12 C 0.15 2.98 3.21 -66.95 -0.21 2.77 16 13 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 14 C -0.13 -2.08 6.13 -24.83 -0.15 -2.23 16 15 C -0.15 -2.63 7.10 -24.52 -0.17 -2.81 16 16 C 0.17 3.95 5.51 -2.53 -0.01 3.93 16 17 N -0.59 -14.49 3.13 -162.57 -0.51 -15.00 16 18 C -0.23 -6.40 9.72 -15.06 -0.15 -6.55 16 19 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 20 C 0.00 -0.05 5.48 -17.43 -0.10 -0.14 16 21 N -0.92 -26.50 10.40 55.49 0.58 -25.92 16 22 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H 0.07 0.70 6.79 -51.93 -0.35 0.34 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.54 8.11 -51.93 -0.42 0.12 16 30 H 0.10 0.89 6.13 -51.93 -0.32 0.57 16 31 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.15 1.97 8.06 -52.49 -0.42 1.54 16 34 H 0.39 5.10 2.56 -40.82 -0.10 5.00 16 35 H 0.06 1.39 8.00 -51.93 -0.42 0.97 16 36 H 0.07 1.64 7.83 -51.93 -0.41 1.24 16 37 H 0.06 1.04 7.76 -51.93 -0.40 0.63 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 2.20 6.58 -51.93 -0.34 1.85 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -32.99 345.18 -9.00 -41.99 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.54 Total: 4.42 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -2.19 Total: 0.76 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.54 Total: -58.04 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.99 -9.00 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028317799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.122 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds