Wall clock time and date at job start Tue Mar 31 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47259 * 2 1 4 4 C 1.35532 * 125.67441 * 262.43485 * 3 2 1 5 5 C 1.35455 * 108.86792 * 180.02562 * 4 3 2 6 6 C 1.39840 * 107.86522 * 359.73600 * 5 4 3 7 7 C 1.37648 * 125.67598 * 82.45817 * 3 2 1 8 8 C 1.46679 * 126.23680 * 359.97438 * 7 3 2 9 9 O 1.21690 * 120.00206 * 174.12326 * 8 7 3 10 10 N 1.34777 * 119.99741 * 354.12212 * 8 7 3 11 11 C 1.46502 * 119.99796 * 175.47616 * 10 8 7 12 12 C 1.53003 * 109.46728 * 184.91467 * 11 10 8 13 13 H 1.09000 * 110.00050 * 53.20503 * 12 11 10 14 14 C 1.54320 * 109.88392 * 292.10113 * 12 11 10 15 15 C 1.55280 * 103.00759 * 218.47369 * 14 12 11 16 16 C 1.54910 * 101.52921 * 35.35737 * 15 14 12 17 17 N 1.47026 * 109.87853 * 174.29254 * 12 11 10 18 18 C 1.36938 * 125.64920 * 298.33960 * 17 12 11 19 19 H 1.07998 * 120.00329 * 350.05286 * 18 17 12 20 20 C 1.38820 * 119.99626 * 170.04856 * 18 17 12 21 21 N 1.31610 * 120.00044 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99646 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47243 * 59.99997 * 22 20 18 24 24 H 1.48498 * 109.47107 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46937 * 300.00131 * 22 20 18 26 26 H 1.09006 * 109.46909 * 300.00248 * 1 2 3 27 27 H 1.09000 * 109.47137 * 59.99867 * 1 2 3 28 28 H 1.08998 * 109.47009 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47503 * 239.99903 * 2 1 3 30 30 H 1.09000 * 109.47137 * 120.00133 * 2 1 3 31 31 H 1.07989 * 125.56838 * 0.03750 * 4 3 2 32 32 H 1.08001 * 126.06911 * 180.02562 * 5 4 3 33 33 H 1.07998 * 126.45861 * 180.26527 * 6 5 4 34 34 H 0.97005 * 119.99882 * 355.47896 * 10 8 7 35 35 H 1.08999 * 109.46916 * 64.91927 * 11 10 8 36 36 H 1.08996 * 109.46987 * 304.91778 * 11 10 8 37 37 H 1.09004 * 110.72101 * 336.75411 * 14 12 11 38 38 H 1.09000 * 110.72049 * 100.03253 * 14 12 11 39 39 H 1.09003 * 110.95504 * 277.34018 * 15 14 12 40 40 H 1.08994 * 111.10074 * 153.45157 * 15 14 12 41 41 H 1.08993 * 110.36813 * 204.23482 * 16 15 14 42 42 H 1.09002 * 110.36031 * 82.02502 * 16 15 14 43 43 H 0.97005 * 119.99872 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4185 2.0781 -1.0914 5 6 2.8027 3.3177 -0.7031 6 6 2.6324 3.4053 0.6821 7 6 2.1476 2.1870 1.1085 8 6 1.8228 1.8189 2.4907 9 8 2.0810 2.5841 3.4009 10 7 1.2382 0.6330 2.7525 11 6 1.0040 0.2222 4.1391 12 6 0.4464 -1.2024 4.1615 13 1 1.0986 -1.8670 3.5949 14 6 -0.9735 -1.2199 3.5574 15 6 -1.7250 -2.2355 4.4601 16 6 -1.0810 -1.9576 5.8414 17 7 0.3360 -1.6743 5.5496 18 6 1.3771 -1.8259 6.4262 19 1 2.3951 -1.7473 6.0744 20 6 1.1238 -2.0806 7.7671 21 7 -0.1168 -2.1768 8.1958 22 14 2.5440 -2.2881 8.9628 23 1 3.3608 -1.0481 8.9812 24 1 2.0109 -2.5505 10.3237 25 1 3.3892 -3.4313 8.5338 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.4291 1.7061 -2.1051 32 1 3.1704 4.1010 -1.3493 33 1 2.8434 4.2644 1.3016 34 1 0.9727 0.0516 2.0228 35 1 0.2874 0.9002 4.6027 36 1 1.9434 0.2535 4.6909 37 1 -1.4332 -0.2338 3.6239 38 1 -0.9487 -1.5661 2.5241 39 1 -1.5332 -3.2593 4.1386 40 1 -2.7947 -2.0274 4.4788 41 1 -1.1682 -2.8338 6.4838 42 1 -1.5513 -1.0944 6.3123 43 1 -0.2937 -2.3552 9.1328 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028317799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:35 Heat of formation + Delta-G solvation = 24.091002 kcal Electronic energy + Delta-G solvation = -23897.613073 eV Core-core repulsion = 20557.794528 eV Total energy + Delta-G solvation = -3339.818545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.49173 -40.38158 -39.21609 -36.44439 -34.84775 -34.33942 -31.62367 -31.00804 -30.35932 -29.61061 -26.79181 -25.80805 -24.53580 -23.21022 -22.03471 -21.60369 -21.27477 -20.62532 -18.98233 -18.54374 -17.45435 -16.87522 -16.68752 -16.61868 -15.86553 -15.81923 -15.72108 -15.46041 -14.72698 -14.59994 -14.05490 -14.00029 -13.66710 -13.55611 -13.45965 -13.20407 -13.15513 -13.02932 -12.92437 -12.84736 -12.69143 -12.23520 -12.08344 -11.89296 -11.75248 -11.47381 -11.46186 -11.29329 -10.72046 -10.28071 -9.71164 -9.17449 -8.92738 -7.88496 -5.27077 0.42930 1.42468 1.46179 1.51681 1.78867 1.83665 2.07789 2.32432 2.47868 3.28348 3.58088 3.67332 3.73644 3.89769 3.91781 3.97841 4.15799 4.22166 4.31369 4.35234 4.45622 4.48883 4.54716 4.65838 4.76247 4.81036 4.88961 4.93048 5.08239 5.12826 5.16341 5.20675 5.26029 5.30259 5.43682 5.48060 5.65574 5.77512 5.79663 5.93780 6.21497 6.34431 6.47450 7.06584 7.08803 7.73518 8.37392 9.19806 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020841 B = 0.004214 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.211264 B = 6642.808434 C = 7506.949836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.071 3.929 3 N -0.422 5.422 4 C 0.044 3.956 5 C -0.224 4.224 6 C -0.128 4.128 7 C -0.089 4.089 8 C 0.575 3.425 9 O -0.587 6.587 10 N -0.715 5.715 11 C 0.123 3.877 12 C 0.150 3.850 13 H 0.051 0.949 14 C -0.116 4.116 15 C -0.131 4.131 16 C 0.167 3.833 17 N -0.610 5.610 18 C -0.243 4.243 19 H 0.075 0.925 20 C -0.058 4.058 21 N -0.944 5.944 22 Si 0.972 3.028 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.272 1.272 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.144 0.856 30 H 0.081 0.919 31 H 0.216 0.784 32 H 0.166 0.834 33 H 0.132 0.868 34 H 0.411 0.589 35 H 0.037 0.963 36 H 0.035 0.965 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.049 0.951 42 H -0.013 1.013 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.101 2.066 -24.918 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.049 4.049 3 N -0.098 5.098 4 C -0.092 4.092 5 C -0.247 4.247 6 C -0.156 4.156 7 C -0.201 4.201 8 C 0.365 3.635 9 O -0.467 6.467 10 N -0.373 5.373 11 C -0.003 4.003 12 C 0.042 3.958 13 H 0.068 0.932 14 C -0.154 4.154 15 C -0.169 4.169 16 C 0.042 3.958 17 N -0.334 5.334 18 C -0.372 4.372 19 H 0.093 0.907 20 C -0.251 4.251 21 N -0.593 5.593 22 Si 0.800 3.200 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.198 1.198 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.128 0.872 29 H 0.162 0.838 30 H 0.099 0.901 31 H 0.233 0.767 32 H 0.184 0.816 33 H 0.150 0.850 34 H 0.255 0.745 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.005 0.995 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.052 2.097 -23.968 24.059 hybrid contribution 0.662 0.138 1.510 1.654 sum 0.611 2.235 -22.458 22.577 Atomic orbital electron populations 1.22405 0.92847 1.05475 1.03330 1.22507 0.96829 0.79010 1.06549 1.44466 1.47591 1.12086 1.05700 1.22751 1.01264 0.92320 0.92850 1.21181 1.10582 0.99078 0.93846 1.21501 1.01705 0.95599 0.96787 1.20170 1.18397 0.95080 0.86428 1.17663 0.77007 0.81352 0.87518 1.90796 1.56493 1.52244 1.47211 1.46454 1.61492 1.19808 1.09512 1.21822 0.99277 0.97704 0.81528 1.21314 0.97023 0.90447 0.86993 0.93170 1.22677 0.93095 0.99633 0.99952 1.22891 0.99560 0.99284 0.95210 1.21411 0.82704 0.97539 0.94115 1.44756 1.04050 1.75354 1.09274 1.19269 0.87199 1.41774 0.88942 0.90711 1.25601 0.98799 1.02374 0.98369 1.70123 1.18607 1.55996 1.14526 0.85262 0.78627 0.78027 0.78097 1.21195 1.21675 1.19803 0.93706 0.89847 0.87182 0.83790 0.90056 0.76742 0.81635 0.85050 0.74495 0.94429 0.94680 0.91808 0.87487 0.90773 0.89691 0.93270 0.99481 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 9.52 71.98 0.69 -1.24 16 2 C 0.07 0.86 5.97 86.38 0.52 1.37 16 3 N -0.42 -7.94 2.76 -511.02 -1.41 -9.35 16 4 C 0.04 0.62 11.36 83.48 0.95 1.57 16 5 C -0.22 -4.13 10.81 22.01 0.24 -3.90 16 6 C -0.13 -3.49 10.66 22.57 0.24 -3.25 16 7 C -0.09 -2.57 6.88 40.35 0.28 -2.29 16 8 C 0.57 21.17 7.77 86.45 0.67 21.84 16 9 O -0.59 -27.35 16.90 -4.32 -0.07 -27.43 16 10 N -0.71 -23.21 4.82 -467.08 -2.25 -25.46 16 11 C 0.12 5.05 5.11 86.38 0.44 5.50 16 12 C 0.15 5.79 3.21 45.34 0.15 5.94 16 13 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 14 C -0.12 -3.43 6.13 31.82 0.20 -3.24 16 15 C -0.13 -4.39 7.10 32.03 0.23 -4.16 16 16 C 0.17 8.09 5.51 86.86 0.48 8.57 16 17 N -0.61 -30.82 3.13 -668.25 -2.09 -32.91 16 18 C -0.24 -13.71 9.72 84.04 0.82 -12.90 16 19 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 20 C -0.06 -3.33 5.48 84.87 0.46 -2.86 16 21 N -0.94 -56.98 10.40 21.65 0.23 -56.76 16 22 Si 0.97 46.87 29.55 68.60 2.03 48.89 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 26 H 0.04 0.73 6.79 -2.38 -0.02 0.72 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.14 0.60 8.11 -2.39 -0.02 0.58 16 30 H 0.08 1.24 6.13 -2.39 -0.01 1.23 16 31 H 0.22 0.88 8.06 -2.92 -0.02 0.85 16 32 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 34 H 0.41 10.03 2.56 -92.70 -0.24 9.79 16 35 H 0.04 1.72 8.00 -2.39 -0.02 1.71 16 36 H 0.03 1.69 7.83 -2.39 -0.02 1.67 16 37 H 0.06 1.93 7.76 -2.38 -0.02 1.91 16 38 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 41 H 0.05 2.69 6.58 -2.39 -0.02 2.68 16 42 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 43 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -79.52 345.18 3.54 -75.99 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.76 Total: 16.08 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 6.35 Total: 10.94 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -5.53 Total: -124.48 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.07 Total: -27.43 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -79.52 3.54 -75.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028317799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.076 kcal (2) G-P(sol) polarization free energy of solvation -79.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds