Wall clock time and date at job start Tue Mar 31 2020 06:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46917 * 2 1 4 4 C 1.34782 * 119.99748 * 271.55209 * 3 2 1 5 5 O 1.21693 * 119.99746 * 185.68544 * 4 3 2 6 6 C 1.46679 * 120.00101 * 5.68980 * 4 3 2 7 7 C 1.37870 * 126.23250 * 7.98363 * 6 4 3 8 8 C 1.39832 * 107.08532 * 179.97438 * 7 6 4 9 9 C 1.35451 * 107.86555 * 0.02562 * 8 7 6 10 10 N 1.35535 * 108.86917 * 359.76323 * 9 8 7 11 11 C 1.46505 * 125.67601 * 180.26376 * 10 9 8 12 12 C 1.46500 * 120.00309 * 91.55985 * 3 2 1 13 13 H 1.09000 * 110.91317 * 347.03398 * 12 3 2 14 14 C 1.55158 * 111.00470 * 110.92937 * 12 3 2 15 15 C 1.54318 * 102.93925 * 82.57453 * 14 12 3 16 16 N 1.47023 * 107.27294 * 22.19191 * 15 14 12 17 17 C 1.36941 * 125.65003 * 180.79143 * 16 15 14 18 18 H 1.07993 * 120.00044 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99992 * 0.02631 * 17 16 15 20 20 N 1.31617 * 119.99796 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00057 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47307 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47306 * 119.99833 * 21 19 17 24 24 H 1.48503 * 109.47026 * 239.99810 * 21 19 17 25 25 C 1.47419 * 108.70305 * 1.05866 * 16 15 14 26 26 H 1.08998 * 109.47299 * 61.47309 * 1 2 3 27 27 H 1.09001 * 109.47154 * 181.47335 * 1 2 3 28 28 H 1.09004 * 109.47206 * 301.46912 * 1 2 3 29 29 H 1.08997 * 109.46962 * 239.99879 * 2 1 3 30 30 H 1.08996 * 109.47034 * 120.00080 * 2 1 3 31 31 H 1.07998 * 126.45911 * 359.97438 * 7 6 4 32 32 H 1.08003 * 126.07003 * 180.02562 * 8 7 6 33 33 H 1.07998 * 125.57101 * 180.02562 * 9 8 7 34 34 H 1.08997 * 109.47152 * 274.22992 * 11 10 9 35 35 H 1.08995 * 109.47052 * 34.22927 * 11 10 9 36 36 H 1.09000 * 109.46705 * 154.23348 * 11 10 9 37 37 H 1.08992 * 110.72135 * 324.21071 * 14 12 3 38 38 H 1.09004 * 110.86761 * 201.00782 * 14 12 3 39 39 H 1.09000 * 109.88547 * 262.77261 * 15 14 12 40 40 H 1.09006 * 109.88358 * 141.60919 * 15 14 12 41 41 H 0.97000 * 119.99864 * 180.02562 * 20 19 17 42 42 H 1.09003 * 110.36655 * 94.70873 * 25 16 15 43 43 H 1.09003 * 110.37131 * 217.03045 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2131 2.0271 -1.1669 5 8 2.7155 3.1354 -1.1723 6 6 1.8194 1.3941 -2.4301 7 6 1.1059 0.2223 -2.5668 8 6 0.9549 -0.0092 -3.9375 9 6 1.5656 1.0024 -4.5996 10 7 2.0907 1.8644 -3.6950 11 6 2.8264 3.0912 -4.0109 12 6 2.2950 2.0604 1.2682 13 1 1.8795 1.5022 2.1072 14 6 3.8179 2.2923 1.4542 15 6 4.0730 3.5797 0.6425 16 7 2.7883 4.2854 0.5280 17 6 2.5828 5.4669 -0.1331 18 1 1.5969 5.9067 -0.1592 19 6 3.6420 6.0994 -0.7697 20 7 4.8438 5.5636 -0.7374 21 14 3.3619 7.7114 -1.6708 22 1 1.9328 8.0994 -1.5588 23 1 4.2114 8.7697 -1.0678 24 1 3.7187 7.5464 -3.1029 25 6 1.7592 3.5137 1.2482 26 1 -0.3634 0.4908 -0.9029 27 1 -0.3633 -1.0273 0.0264 28 1 -0.3634 0.5365 0.8765 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.7339 -0.3997 -1.7661 32 1 0.4423 -0.8461 -4.3884 33 1 1.6212 1.1075 -5.6730 34 1 3.8783 2.8534 -4.1695 35 1 2.4148 3.5391 -4.9153 36 1 2.7337 3.7939 -3.1827 37 1 4.3878 1.4586 1.0442 38 1 4.0619 2.4445 2.5056 39 1 4.4456 3.3248 -0.3496 40 1 4.7962 4.2083 1.1621 41 1 5.5839 6.0057 -1.1819 42 1 1.6451 3.8899 2.2649 43 1 0.8087 3.5603 0.7167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033756154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:20 Heat of formation + Delta-G solvation = 125.828707 kcal Electronic energy + Delta-G solvation = -25647.819356 eV Core-core repulsion = 22312.412489 eV Total energy + Delta-G solvation = -3335.406867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10691 -39.24689 -35.86264 -35.64742 -32.54290 -31.99851 -30.10737 -29.00669 -28.58581 -26.93365 -25.96823 -24.31376 -23.18375 -22.02284 -20.65472 -19.80952 -19.54757 -18.13547 -16.89254 -16.37951 -15.76853 -15.38261 -15.06031 -14.41568 -14.36720 -14.17037 -13.72779 -13.61714 -13.04135 -12.83384 -12.63348 -12.21517 -12.06809 -11.87136 -11.78625 -11.62350 -11.55129 -11.32540 -11.11015 -10.91665 -10.73552 -10.69675 -10.59211 -9.93758 -9.92227 -9.63621 -9.40517 -8.53104 -8.42949 -8.29888 -7.79097 -7.70028 -6.21493 -5.40688 -2.65219 2.09977 3.09223 3.09905 3.49136 3.56123 3.57413 3.78562 4.18553 4.70899 5.04460 5.13863 5.28709 5.30503 5.36077 5.54534 5.58689 5.66530 5.71379 5.72994 5.74390 5.77839 5.85765 5.93619 6.01361 6.09893 6.27921 6.34228 6.37360 6.38137 6.55552 6.61143 6.67599 6.69656 6.83584 7.13812 7.41448 7.42064 7.62160 7.79704 7.95655 8.12770 8.20527 8.57034 9.25671 9.52182 10.13935 10.81279 11.71960 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.007861 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.105432 B = 3560.823743 C = 4820.638379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.092 3.908 3 N -0.601 5.601 4 C 0.525 3.475 5 O -0.409 6.409 6 C -0.022 4.022 7 C -0.197 4.197 8 C -0.215 4.215 9 C -0.009 4.009 10 N -0.405 5.405 11 C 0.059 3.941 12 C 0.138 3.862 13 H 0.082 0.918 14 C -0.161 4.161 15 C 0.194 3.806 16 N -0.565 5.565 17 C -0.187 4.187 18 H 0.066 0.934 19 C -0.009 4.009 20 N -0.919 5.919 21 Si 0.894 3.106 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.296 1.296 25 C 0.129 3.871 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.169 0.831 32 H 0.133 0.867 33 H 0.158 0.842 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.028 0.972 41 H 0.242 0.758 42 H 0.022 0.978 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 -13.891 -1.893 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.031 4.031 3 N -0.338 5.338 4 C 0.310 3.690 5 O -0.276 6.276 6 C -0.137 4.137 7 C -0.222 4.222 8 C -0.240 4.240 9 C -0.144 4.144 10 N -0.078 5.078 11 C -0.082 4.082 12 C 0.033 3.967 13 H 0.100 0.900 14 C -0.201 4.201 15 C 0.070 3.930 16 N -0.290 5.290 17 C -0.316 4.316 18 H 0.083 0.917 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.727 3.273 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.224 1.224 25 C 0.002 3.998 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.186 0.814 32 H 0.150 0.850 33 H 0.176 0.824 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.039 0.961 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.073 -12.703 -2.109 14.237 hybrid contribution -0.228 0.680 -0.787 1.065 sum -6.301 -12.023 -2.896 13.879 Atomic orbital electron populations 1.22494 0.96704 1.01720 1.03309 1.22006 0.93933 0.83947 1.03237 1.47382 1.68324 1.13107 1.04987 1.17361 0.82554 0.86831 0.82269 1.91579 1.35973 1.15320 1.84698 1.20618 1.08638 0.98286 0.86168 1.22474 1.04428 0.97928 0.97382 1.20765 1.08075 1.01131 0.93998 1.21866 1.04073 0.93397 0.95039 1.43927 1.40043 1.18818 1.04963 1.22417 0.95776 0.85461 1.04560 1.22237 0.96260 0.94136 0.84030 0.90021 1.23383 0.95001 1.01227 1.00444 1.21088 0.87814 0.87067 0.97006 1.44134 1.03456 1.22488 1.58956 1.18836 0.94032 0.94543 1.24199 0.91650 1.24535 0.95864 0.98309 1.01637 1.69975 0.99164 1.38787 1.48944 0.86285 0.76836 0.84595 0.79607 1.21068 1.22333 1.22410 1.21770 0.93494 0.89142 0.95416 0.90938 0.92006 0.92319 0.88874 0.91328 0.81398 0.84954 0.82440 0.91078 0.90944 0.85716 0.92512 0.92162 0.92187 0.95433 0.94707 0.96051 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.79 37.16 0.33 -1.70 16 2 C 0.09 1.15 5.56 -4.04 -0.02 1.13 16 3 N -0.60 -10.21 2.56 -165.21 -0.42 -10.63 16 4 C 0.52 10.62 7.10 -12.85 -0.09 10.53 16 5 O -0.41 -9.93 6.50 5.20 0.03 -9.90 16 6 C -0.02 -0.39 6.72 -81.98 -0.55 -0.94 16 7 C -0.20 -2.94 7.34 -39.12 -0.29 -3.22 16 8 C -0.22 -2.96 10.81 -39.98 -0.43 -3.39 16 9 C -0.01 -0.13 11.38 -16.91 -0.19 -0.32 16 10 N -0.41 -7.01 3.16 -120.24 -0.38 -7.39 16 11 C 0.06 1.02 10.78 59.85 0.65 1.67 16 12 C 0.14 2.43 3.76 -65.78 -0.25 2.18 16 13 H 0.08 1.17 8.00 -51.93 -0.42 0.76 16 14 C -0.16 -3.12 6.55 -24.90 -0.16 -3.29 16 15 C 0.19 4.90 4.22 -3.07 -0.01 4.89 16 16 N -0.57 -14.63 1.74 -170.08 -0.30 -14.93 16 17 C -0.19 -5.34 8.86 -15.06 -0.13 -5.48 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 20 N -0.92 -27.58 10.31 55.49 0.57 -27.01 16 21 Si 0.89 22.91 29.55 -169.99 -5.02 17.88 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 24 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 25 C 0.13 2.76 6.21 -2.54 -0.02 2.75 16 26 H 0.07 0.92 6.02 -51.93 -0.31 0.61 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.16 4.92 -51.93 -0.26 0.91 16 30 H 0.07 0.73 8.04 -51.93 -0.42 0.32 16 31 H 0.17 2.09 3.06 -52.49 -0.16 1.93 16 32 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 33 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.12 2.73 5.97 -51.93 -0.31 2.42 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.71 5.67 -51.93 -0.29 1.41 16 40 H 0.03 0.78 7.49 -51.93 -0.39 0.39 16 41 H 0.24 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.03 0.75 8.11 -51.93 -0.42 0.33 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -32.88 325.25 -8.21 -41.10 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.33 Total: 1.53 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.27 Total: 4.45 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.53 Total: -59.96 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.03 Total: -9.90 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.88 -8.21 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033756154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.925 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds