Wall clock time and date at job start Tue Mar 31 2020 06:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46917 * 2 1 4 4 C 1.34782 * 119.99748 * 271.55209 * 3 2 1 5 5 O 1.21693 * 119.99746 * 185.68544 * 4 3 2 6 6 C 1.46679 * 120.00101 * 5.68980 * 4 3 2 7 7 C 1.37870 * 126.23250 * 7.98363 * 6 4 3 8 8 C 1.39832 * 107.08532 * 179.97438 * 7 6 4 9 9 C 1.35451 * 107.86555 * 0.02562 * 8 7 6 10 10 N 1.35535 * 108.86917 * 359.76323 * 9 8 7 11 11 C 1.46505 * 125.67601 * 180.26376 * 10 9 8 12 12 C 1.46500 * 120.00309 * 91.55985 * 3 2 1 13 13 H 1.09000 * 110.91317 * 347.03398 * 12 3 2 14 14 C 1.55158 * 111.00470 * 110.92937 * 12 3 2 15 15 C 1.54318 * 102.93925 * 82.57453 * 14 12 3 16 16 N 1.47023 * 107.27294 * 22.19191 * 15 14 12 17 17 C 1.36941 * 125.65003 * 180.79143 * 16 15 14 18 18 H 1.07993 * 120.00044 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99992 * 0.02631 * 17 16 15 20 20 N 1.31617 * 119.99796 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00057 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47307 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47306 * 119.99833 * 21 19 17 24 24 H 1.48503 * 109.47026 * 239.99810 * 21 19 17 25 25 C 1.47419 * 108.70305 * 1.05866 * 16 15 14 26 26 H 1.08998 * 109.47299 * 61.47309 * 1 2 3 27 27 H 1.09001 * 109.47154 * 181.47335 * 1 2 3 28 28 H 1.09004 * 109.47206 * 301.46912 * 1 2 3 29 29 H 1.08997 * 109.46962 * 239.99879 * 2 1 3 30 30 H 1.08996 * 109.47034 * 120.00080 * 2 1 3 31 31 H 1.07998 * 126.45911 * 359.97438 * 7 6 4 32 32 H 1.08003 * 126.07003 * 180.02562 * 8 7 6 33 33 H 1.07998 * 125.57101 * 180.02562 * 9 8 7 34 34 H 1.08997 * 109.47152 * 274.22992 * 11 10 9 35 35 H 1.08995 * 109.47052 * 34.22927 * 11 10 9 36 36 H 1.09000 * 109.46705 * 154.23348 * 11 10 9 37 37 H 1.08992 * 110.72135 * 324.21071 * 14 12 3 38 38 H 1.09004 * 110.86761 * 201.00782 * 14 12 3 39 39 H 1.09000 * 109.88547 * 262.77261 * 15 14 12 40 40 H 1.09006 * 109.88358 * 141.60919 * 15 14 12 41 41 H 0.97000 * 119.99864 * 180.02562 * 20 19 17 42 42 H 1.09003 * 110.36655 * 94.70873 * 25 16 15 43 43 H 1.09003 * 110.37131 * 217.03045 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2131 2.0271 -1.1669 5 8 2.7155 3.1354 -1.1723 6 6 1.8194 1.3941 -2.4301 7 6 1.1059 0.2223 -2.5668 8 6 0.9549 -0.0092 -3.9375 9 6 1.5656 1.0024 -4.5996 10 7 2.0907 1.8644 -3.6950 11 6 2.8264 3.0912 -4.0109 12 6 2.2950 2.0604 1.2682 13 1 1.8795 1.5022 2.1072 14 6 3.8179 2.2923 1.4542 15 6 4.0730 3.5797 0.6425 16 7 2.7883 4.2854 0.5280 17 6 2.5828 5.4669 -0.1331 18 1 1.5969 5.9067 -0.1592 19 6 3.6420 6.0994 -0.7697 20 7 4.8438 5.5636 -0.7374 21 14 3.3619 7.7114 -1.6708 22 1 1.9328 8.0994 -1.5588 23 1 4.2114 8.7697 -1.0678 24 1 3.7187 7.5464 -3.1029 25 6 1.7592 3.5137 1.2482 26 1 -0.3634 0.4908 -0.9029 27 1 -0.3633 -1.0273 0.0264 28 1 -0.3634 0.5365 0.8765 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.7339 -0.3997 -1.7661 32 1 0.4423 -0.8461 -4.3884 33 1 1.6212 1.1075 -5.6730 34 1 3.8783 2.8534 -4.1695 35 1 2.4148 3.5391 -4.9153 36 1 2.7337 3.7939 -3.1827 37 1 4.3878 1.4586 1.0442 38 1 4.0619 2.4445 2.5056 39 1 4.4456 3.3248 -0.3496 40 1 4.7962 4.2083 1.1621 41 1 5.5839 6.0057 -1.1819 42 1 1.6451 3.8899 2.2649 43 1 0.8087 3.5603 0.7167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033756154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:20 Heat of formation + Delta-G solvation = 106.092118 kcal Electronic energy + Delta-G solvation = -25648.675199 eV Core-core repulsion = 22312.412489 eV Total energy + Delta-G solvation = -3336.262710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.34593 -40.70264 -37.56498 -36.97703 -34.31655 -33.42912 -31.59758 -30.56298 -30.01868 -28.60427 -27.25400 -26.31426 -24.38878 -23.29137 -21.94279 -21.71026 -20.85747 -19.50359 -18.69292 -17.88758 -17.11679 -16.90005 -16.44794 -16.39360 -15.71549 -15.58348 -15.52614 -15.05976 -14.31910 -14.04781 -13.86498 -13.64930 -13.56627 -13.47492 -13.40048 -12.98660 -12.94873 -12.84990 -12.74923 -12.48528 -12.24556 -12.09300 -12.05827 -11.95552 -11.63177 -11.46626 -11.33015 -10.54253 -10.05631 -9.54337 -9.28349 -8.95202 -8.23907 -7.61197 -4.84321 0.82609 1.40539 1.41491 1.50397 1.86024 1.99616 2.50869 2.58966 2.78855 3.55445 3.78713 3.90515 4.01066 4.05000 4.19595 4.25848 4.28285 4.33361 4.41691 4.52970 4.60088 4.62571 4.71507 4.78099 4.85738 4.89319 4.94266 5.04385 5.08929 5.14373 5.19829 5.32277 5.37844 5.54217 5.54968 5.86832 5.97355 6.09296 6.10854 6.20670 6.43843 6.45537 6.82452 7.34411 7.83133 8.05272 8.69857 9.50152 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.007861 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.105432 B = 3560.823743 C = 4820.638379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.087 3.913 3 N -0.599 5.599 4 C 0.515 3.485 5 O -0.466 6.466 6 C -0.072 4.072 7 C -0.175 4.175 8 C -0.217 4.217 9 C -0.005 4.005 10 N -0.423 5.423 11 C 0.070 3.930 12 C 0.151 3.849 13 H 0.134 0.866 14 C -0.147 4.147 15 C 0.208 3.792 16 N -0.578 5.578 17 C -0.188 4.188 18 H 0.057 0.943 19 C -0.061 4.061 20 N -0.943 5.943 21 Si 0.952 3.048 22 H -0.277 1.277 23 H -0.298 1.298 24 H -0.298 1.298 25 C 0.124 3.876 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.194 0.806 32 H 0.168 0.832 33 H 0.190 0.810 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.020 0.980 40 H -0.019 1.019 41 H 0.232 0.768 42 H 0.034 0.966 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.871 -17.083 -1.842 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.034 4.034 3 N -0.335 5.335 4 C 0.302 3.698 5 O -0.337 6.337 6 C -0.186 4.186 7 C -0.200 4.200 8 C -0.241 4.241 9 C -0.139 4.139 10 N -0.096 5.096 11 C -0.071 4.071 12 C 0.047 3.953 13 H 0.151 0.849 14 C -0.186 4.186 15 C 0.083 3.917 16 N -0.302 5.302 17 C -0.318 4.318 18 H 0.075 0.925 19 C -0.253 4.253 20 N -0.595 5.595 21 Si 0.783 3.217 22 H -0.202 1.202 23 H -0.226 1.226 24 H -0.226 1.226 25 C -0.002 4.002 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.211 0.789 32 H 0.185 0.815 33 H 0.207 0.793 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.038 0.962 40 H -0.001 1.001 41 H 0.042 0.958 42 H 0.052 0.948 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.296 -15.959 -2.022 18.100 hybrid contribution 0.347 1.561 -0.852 1.812 sum -7.949 -14.398 -2.875 16.696 Atomic orbital electron populations 1.22417 0.95214 1.03666 1.02222 1.22302 0.95016 0.81311 1.04816 1.47516 1.67495 1.14678 1.03809 1.17902 0.81563 0.86545 0.83837 1.91565 1.38696 1.17745 1.85741 1.20637 1.11902 1.00272 0.85798 1.22852 1.01968 0.96261 0.98875 1.21226 1.07704 1.01792 0.93391 1.22574 1.02422 0.92539 0.96339 1.44057 1.40855 1.19127 1.05573 1.22125 0.96103 0.85356 1.03557 1.22205 0.94495 0.92599 0.86006 0.84881 1.23224 0.96761 0.98100 1.00563 1.20711 0.86781 0.88832 0.95326 1.44244 1.04926 1.22210 1.58816 1.19008 0.93439 0.95535 1.23815 0.92537 1.25152 0.95824 1.01311 1.03025 1.70215 0.99580 1.39809 1.49934 0.85367 0.76865 0.81176 0.78242 1.20171 1.22581 1.22567 1.21958 0.91975 0.91411 0.94882 0.92944 0.88485 0.92475 0.88729 0.88329 0.78943 0.81485 0.79261 0.91600 0.88110 0.90685 0.91585 0.89930 0.96227 1.00098 0.95782 0.94802 0.96110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 8.79 71.98 0.63 -2.53 16 2 C 0.09 1.84 5.56 86.38 0.48 2.32 16 3 N -0.60 -19.39 2.56 -794.80 -2.03 -21.42 16 4 C 0.51 21.19 7.10 86.45 0.61 21.80 16 5 O -0.47 -23.96 6.50 -4.33 -0.03 -23.99 16 6 C -0.07 -2.60 6.72 40.35 0.27 -2.33 16 7 C -0.17 -4.72 7.34 22.57 0.17 -4.56 16 8 C -0.22 -5.19 10.81 22.01 0.24 -4.95 16 9 C 0.00 -0.12 11.38 83.48 0.95 0.83 16 10 N -0.42 -14.56 3.16 -534.32 -1.69 -16.25 16 11 C 0.07 2.57 10.78 127.77 1.38 3.94 16 12 C 0.15 5.02 3.76 46.38 0.17 5.19 16 13 H 0.13 3.14 8.00 -2.39 -0.02 3.12 16 14 C -0.15 -5.58 6.55 31.78 0.21 -5.37 16 15 C 0.21 11.02 4.22 86.73 0.37 11.38 16 16 N -0.58 -31.15 1.74 -692.01 -1.20 -32.35 16 17 C -0.19 -11.26 8.86 84.03 0.74 -10.52 16 18 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 19 C -0.06 -3.72 5.49 84.86 0.47 -3.25 16 20 N -0.94 -60.36 10.31 21.65 0.22 -60.14 16 21 Si 0.95 49.42 29.55 68.60 2.03 51.45 16 22 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 23 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 24 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 25 C 0.12 5.29 6.21 86.85 0.54 5.83 16 26 H 0.05 1.17 6.02 -2.39 -0.01 1.15 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 2.01 4.92 -2.39 -0.01 2.00 16 30 H 0.10 1.56 8.04 -2.39 -0.02 1.54 16 31 H 0.19 4.04 3.06 -2.91 -0.01 4.03 16 32 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 33 H 0.19 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.07 3.57 5.97 -2.39 -0.01 3.55 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.08 2.77 8.14 -2.38 -0.02 2.75 16 39 H 0.02 1.20 5.67 -2.39 -0.01 1.19 16 40 H -0.02 -1.15 7.49 -2.38 -0.02 -1.17 16 41 H 0.23 14.66 8.31 -92.71 -0.77 13.89 16 42 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.02 0.93 8.11 -2.39 -0.02 0.91 16 Total: -1.00 -79.19 325.25 5.53 -73.65 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.01 Total: 11.25 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 7.23 Total: 17.80 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -4.70 Total: -130.16 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.03 Total: -23.99 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.03 Total: 51.45 kcal Total: -79.19 5.53 -73.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033756154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.747 kcal (2) G-P(sol) polarization free energy of solvation -79.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds