Wall clock time and date at job start Tue Mar 31 2020 06:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46490 * 109.47111 * 2 1 4 4 C 1.34778 * 120.00216 * 269.89955 * 3 2 1 5 5 O 1.21625 * 120.00459 * 187.13359 * 4 3 2 6 6 C 1.47267 * 119.99729 * 7.14338 * 4 3 2 7 7 C 1.46686 * 126.94298 * 6.94401 * 6 4 3 8 8 C 1.34489 * 106.33305 * 179.89195 * 7 6 4 9 9 N 1.36452 * 108.85177 * 0.37560 * 8 7 6 10 10 C 1.46500 * 124.84599 * 179.72964 * 9 8 7 11 11 C 1.34655 * 110.30156 * 359.75200 * 9 8 7 12 12 C 1.46502 * 119.99986 * 89.90819 * 3 2 1 13 13 H 1.09001 * 110.78120 * 10.25397 * 12 3 2 14 14 C 1.55158 * 110.71583 * 247.01639 * 12 3 2 15 15 C 1.54906 * 101.58401 * 277.13580 * 14 12 3 16 16 N 1.47430 * 104.83230 * 322.99324 * 15 14 12 17 17 C 1.36936 * 125.65066 * 204.16137 * 16 15 14 18 18 H 1.07992 * 120.00141 * 179.97438 * 17 16 15 19 19 C 1.38814 * 119.99904 * 359.95572 * 17 16 15 20 20 N 1.31623 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00163 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46584 * 90.00369 * 21 19 17 23 23 H 1.48498 * 109.47302 * 210.00185 * 21 19 17 24 24 H 1.48500 * 109.46988 * 330.00701 * 21 19 17 25 25 C 1.47016 * 108.70120 * 24.12753 * 16 15 14 26 26 H 1.09002 * 109.47014 * 299.99896 * 1 2 3 27 27 H 1.09003 * 109.47102 * 60.00222 * 1 2 3 28 28 H 1.09003 * 109.46831 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46844 * 239.99576 * 2 1 3 30 30 H 1.09004 * 109.46938 * 120.00546 * 2 1 3 31 31 H 1.08003 * 126.82947 * 0.02562 * 7 6 4 32 32 H 1.07999 * 125.57280 * 180.15666 * 8 7 6 33 33 H 1.08997 * 109.47050 * 270.02522 * 10 9 8 34 34 H 1.08999 * 109.47133 * 30.02037 * 10 9 8 35 35 H 1.08993 * 109.46951 * 150.02612 * 10 9 8 36 36 H 1.07994 * 125.80180 * 180.02562 * 11 9 8 37 37 H 1.08999 * 111.00123 * 159.06330 * 14 12 3 38 38 H 1.09003 * 111.04017 * 35.22391 * 14 12 3 39 39 H 1.08998 * 110.37486 * 204.15594 * 15 14 12 40 40 H 1.09005 * 110.46164 * 81.87522 * 15 14 12 41 41 H 0.96997 * 120.00511 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.88295 * 118.35885 * 25 16 15 43 43 H 1.09005 * 109.88307 * 239.52234 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2449 2.0158 -1.1672 5 8 2.7713 3.1123 -1.1711 6 6 1.8549 1.3818 -2.4379 7 6 1.0901 0.1415 -2.6060 8 6 0.9692 -0.0516 -3.9314 9 7 1.6043 0.9641 -4.5847 10 6 1.6935 1.0962 -6.0410 11 6 2.1378 1.8274 -3.6996 12 6 2.2606 2.0724 1.2687 13 1 2.2053 1.3759 2.1054 14 6 1.2557 3.2393 1.4586 15 6 1.9303 4.3672 0.6387 16 7 3.3752 4.1917 0.8730 17 6 4.3265 5.1705 0.7619 18 1 5.3635 4.9401 0.9559 19 6 3.9577 6.4588 0.3996 20 7 2.6937 6.7397 0.1633 21 14 5.2552 7.7942 0.2487 22 1 5.7794 7.8202 -1.1405 23 1 4.6507 9.1108 0.5744 24 1 6.3670 7.5129 1.1920 25 6 3.6256 2.7920 1.2465 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.6997 -0.4898 -1.8214 32 1 0.4565 -0.8776 -4.4018 33 1 2.5879 0.5857 -6.3981 34 1 0.8121 0.6494 -6.5010 35 1 1.7469 2.1517 -6.3074 36 1 2.6941 2.7200 -3.9445 37 1 1.1728 3.5163 2.5095 38 1 0.2794 2.9861 1.0452 39 1 1.6039 5.3437 0.9965 40 1 1.7018 4.2566 -0.4214 41 1 2.4359 7.6399 -0.0896 42 1 4.2798 2.3234 0.5112 43 1 4.0838 2.7483 2.2347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033789494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:34 Heat of formation + Delta-G solvation = 108.858166 kcal Electronic energy + Delta-G solvation = -24770.541656 eV Core-core repulsion = 21434.398890 eV Total energy + Delta-G solvation = -3336.142765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13925 -39.38410 -35.94639 -35.42380 -32.78841 -31.82140 -30.10678 -28.97736 -28.59588 -27.14581 -26.31015 -24.19796 -23.19680 -21.92680 -20.70788 -19.77110 -19.51712 -18.26647 -16.93217 -16.46274 -15.79450 -15.40345 -15.31045 -14.78970 -14.34103 -14.24600 -13.74184 -13.52639 -13.14302 -12.80763 -12.78212 -12.49037 -12.36094 -12.15032 -11.78626 -11.68396 -11.48350 -11.30209 -11.26019 -10.88117 -10.71847 -10.65251 -10.51422 -9.87975 -9.73640 -9.47363 -9.23442 -8.70822 -8.37104 -8.34732 -8.03147 -7.56926 -6.32235 -5.28584 -2.64261 2.20278 2.61004 2.93071 3.57939 3.61843 3.63924 3.71415 4.24162 4.64504 4.77326 4.95762 4.98262 5.13492 5.22074 5.24456 5.30657 5.43626 5.62563 5.63921 5.71422 5.81279 5.84166 5.86379 5.99029 6.01315 6.08632 6.22212 6.29528 6.43425 6.54348 6.74243 6.83173 6.94300 6.98057 7.03588 7.20048 7.36486 7.52214 7.90459 8.16404 8.20985 8.30800 8.74780 9.27851 9.59964 10.22033 10.90683 11.74751 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.005650 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.308478 B = 4954.474248 C = 6162.415612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.098 3.902 3 N -0.606 5.606 4 C 0.548 3.452 5 O -0.456 6.456 6 C -0.213 4.213 7 C -0.195 4.195 8 C -0.030 4.030 9 N -0.452 5.452 10 C 0.071 3.929 11 C 0.063 3.937 12 C 0.138 3.862 13 H 0.079 0.921 14 C -0.159 4.159 15 C 0.155 3.845 16 N -0.577 5.577 17 C -0.197 4.197 18 H 0.069 0.931 19 C -0.017 4.017 20 N -0.921 5.921 21 Si 0.906 3.094 22 H -0.294 1.294 23 H -0.294 1.294 24 H -0.285 1.285 25 C 0.140 3.860 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.172 0.828 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.244 0.756 42 H 0.020 0.980 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 -17.991 -7.911 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 N -0.341 5.341 4 C 0.336 3.664 5 O -0.327 6.327 6 C -0.223 4.223 7 C -0.219 4.219 8 C -0.156 4.156 9 N -0.129 5.129 10 C -0.071 4.071 11 C -0.071 4.071 12 C 0.034 3.966 13 H 0.097 0.903 14 C -0.199 4.199 15 C 0.030 3.970 16 N -0.302 5.302 17 C -0.327 4.327 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.572 5.572 21 Si 0.738 3.262 22 H -0.222 1.222 23 H -0.221 1.221 24 H -0.211 1.211 25 C 0.012 3.988 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.184 0.816 32 H 0.177 0.823 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.189 0.811 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.038 0.962 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -6.306 -17.131 -8.327 20.065 hybrid contribution 0.551 0.484 -0.285 0.787 sum -5.755 -16.647 -8.613 19.607 Atomic orbital electron populations 1.22465 0.96858 1.01392 1.03262 1.21904 0.93866 0.83874 1.02904 1.47572 1.67915 1.13189 1.05457 1.17456 0.81208 0.85306 0.82443 1.91170 1.38123 1.17439 1.86017 1.20650 1.09313 0.99314 0.93033 1.23083 1.04678 0.98744 0.95390 1.21765 1.05567 0.95507 0.92800 1.43578 1.42660 1.20281 1.06351 1.22047 1.03179 1.04053 0.77811 1.21819 1.00909 0.96197 0.88129 1.22007 0.97092 0.93492 0.83960 0.90286 1.23525 0.97350 0.98100 1.00923 1.22190 0.82525 0.95664 0.96581 1.44147 1.03821 1.02770 1.79427 1.18986 0.88330 0.87945 1.37394 0.91291 1.24650 0.96143 0.97256 1.03053 1.69856 1.13952 1.18617 1.54727 0.86179 0.80620 0.81904 0.77515 1.22189 1.22062 1.21070 1.21389 0.93234 0.87822 0.96329 0.92282 0.91157 0.92278 0.89122 0.91556 0.81580 0.82271 0.91022 0.89989 0.89735 0.81055 0.92093 0.92708 0.89269 0.93637 0.94463 0.96213 0.96521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 8.68 37.16 0.32 -1.68 16 2 C 0.10 1.24 5.59 -4.04 -0.02 1.21 16 3 N -0.61 -10.68 2.50 -165.34 -0.41 -11.09 16 4 C 0.55 11.25 6.77 -12.59 -0.09 11.16 16 5 O -0.46 -11.79 10.30 5.26 0.05 -11.73 16 6 C -0.21 -3.62 6.04 -103.35 -0.62 -4.24 16 7 C -0.20 -2.52 7.48 -37.50 -0.28 -2.80 16 8 C -0.03 -0.33 11.34 -16.82 -0.19 -0.52 16 9 N -0.45 -5.32 3.09 -124.53 -0.38 -5.71 16 10 C 0.07 0.52 11.03 59.85 0.66 1.18 16 11 C 0.06 0.98 11.13 -16.84 -0.19 0.79 16 12 C 0.14 2.66 3.71 -66.09 -0.25 2.42 16 13 H 0.08 1.27 7.84 -51.93 -0.41 0.86 16 14 C -0.16 -3.38 6.66 -24.58 -0.16 -3.54 16 15 C 0.15 4.20 4.89 -2.53 -0.01 4.19 16 16 N -0.58 -16.31 2.29 -170.07 -0.39 -16.70 16 17 C -0.20 -6.04 10.27 -15.06 -0.15 -6.20 16 18 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.02 -0.51 5.49 -17.43 -0.10 -0.61 16 20 N -0.92 -29.30 10.09 55.49 0.56 -28.74 16 21 Si 0.91 23.93 29.55 -169.99 -5.02 18.91 16 22 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 23 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 24 H -0.28 -7.30 7.11 56.52 0.40 -6.89 16 25 C 0.14 3.29 6.01 -3.07 -0.02 3.27 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.87 6.19 -51.93 -0.32 0.55 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 1.08 4.84 -51.93 -0.25 0.83 16 30 H 0.07 0.73 7.90 -51.93 -0.41 0.32 16 31 H 0.17 1.80 3.51 -52.48 -0.18 1.62 16 32 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.43 8.13 -51.93 -0.42 0.00 16 35 H 0.08 0.58 8.13 -51.93 -0.42 0.15 16 36 H 0.17 2.71 8.06 -52.49 -0.42 2.29 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 2.72 5.87 -51.93 -0.30 2.42 16 40 H 0.05 1.37 5.21 -53.02 -0.28 1.10 16 41 H 0.24 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.02 0.50 7.39 -51.93 -0.38 0.12 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 330.35 15.07 4.98 4.98 Total: -1.00 -37.36 330.35 -8.03 -45.39 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.31 Total: 0.05 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -1.10 Total: 4.64 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.63 Total: -62.24 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.05 Total: -11.73 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.02 Total: 18.91 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -37.36 -8.03 -45.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033789494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.248 kcal (2) G-P(sol) polarization free energy of solvation -37.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds