Wall clock time and date at job start Tue Mar 31 2020 06:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46490 * 109.47111 * 2 1 4 4 C 1.34778 * 120.00216 * 269.89955 * 3 2 1 5 5 O 1.21625 * 120.00459 * 187.13359 * 4 3 2 6 6 C 1.47267 * 119.99729 * 7.14338 * 4 3 2 7 7 C 1.46686 * 126.94298 * 6.94401 * 6 4 3 8 8 C 1.34489 * 106.33305 * 179.89195 * 7 6 4 9 9 N 1.36452 * 108.85177 * 0.37560 * 8 7 6 10 10 C 1.46500 * 124.84599 * 179.72964 * 9 8 7 11 11 C 1.34655 * 110.30156 * 359.75200 * 9 8 7 12 12 C 1.46502 * 119.99986 * 89.90819 * 3 2 1 13 13 H 1.09001 * 110.78120 * 10.25397 * 12 3 2 14 14 C 1.55158 * 110.71583 * 247.01639 * 12 3 2 15 15 C 1.54906 * 101.58401 * 277.13580 * 14 12 3 16 16 N 1.47430 * 104.83230 * 322.99324 * 15 14 12 17 17 C 1.36936 * 125.65066 * 204.16137 * 16 15 14 18 18 H 1.07992 * 120.00141 * 179.97438 * 17 16 15 19 19 C 1.38814 * 119.99904 * 359.95572 * 17 16 15 20 20 N 1.31623 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00163 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46584 * 90.00369 * 21 19 17 23 23 H 1.48498 * 109.47302 * 210.00185 * 21 19 17 24 24 H 1.48500 * 109.46988 * 330.00701 * 21 19 17 25 25 C 1.47016 * 108.70120 * 24.12753 * 16 15 14 26 26 H 1.09002 * 109.47014 * 299.99896 * 1 2 3 27 27 H 1.09003 * 109.47102 * 60.00222 * 1 2 3 28 28 H 1.09003 * 109.46831 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46844 * 239.99576 * 2 1 3 30 30 H 1.09004 * 109.46938 * 120.00546 * 2 1 3 31 31 H 1.08003 * 126.82947 * 0.02562 * 7 6 4 32 32 H 1.07999 * 125.57280 * 180.15666 * 8 7 6 33 33 H 1.08997 * 109.47050 * 270.02522 * 10 9 8 34 34 H 1.08999 * 109.47133 * 30.02037 * 10 9 8 35 35 H 1.08993 * 109.46951 * 150.02612 * 10 9 8 36 36 H 1.07994 * 125.80180 * 180.02562 * 11 9 8 37 37 H 1.08999 * 111.00123 * 159.06330 * 14 12 3 38 38 H 1.09003 * 111.04017 * 35.22391 * 14 12 3 39 39 H 1.08998 * 110.37486 * 204.15594 * 15 14 12 40 40 H 1.09005 * 110.46164 * 81.87522 * 15 14 12 41 41 H 0.96997 * 120.00511 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.88295 * 118.35885 * 25 16 15 43 43 H 1.09005 * 109.88307 * 239.52234 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2449 2.0158 -1.1672 5 8 2.7713 3.1123 -1.1711 6 6 1.8549 1.3818 -2.4379 7 6 1.0901 0.1415 -2.6060 8 6 0.9692 -0.0516 -3.9314 9 7 1.6043 0.9641 -4.5847 10 6 1.6935 1.0962 -6.0410 11 6 2.1378 1.8274 -3.6996 12 6 2.2606 2.0724 1.2687 13 1 2.2053 1.3759 2.1054 14 6 1.2557 3.2393 1.4586 15 6 1.9303 4.3672 0.6387 16 7 3.3752 4.1917 0.8730 17 6 4.3265 5.1705 0.7619 18 1 5.3635 4.9401 0.9559 19 6 3.9577 6.4588 0.3996 20 7 2.6937 6.7397 0.1633 21 14 5.2552 7.7942 0.2487 22 1 5.7794 7.8202 -1.1405 23 1 4.6507 9.1108 0.5744 24 1 6.3670 7.5129 1.1920 25 6 3.6256 2.7920 1.2465 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.6997 -0.4898 -1.8214 32 1 0.4565 -0.8776 -4.4018 33 1 2.5879 0.5857 -6.3981 34 1 0.8121 0.6494 -6.5010 35 1 1.7469 2.1517 -6.3074 36 1 2.6941 2.7200 -3.9445 37 1 1.1728 3.5163 2.5095 38 1 0.2794 2.9861 1.0452 39 1 1.6039 5.3437 0.9965 40 1 1.7018 4.2566 -0.4214 41 1 2.4359 7.6399 -0.0896 42 1 4.2798 2.3234 0.5112 43 1 4.0838 2.7483 2.2347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033789494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:33 Heat of formation + Delta-G solvation = 84.299219 kcal Electronic energy + Delta-G solvation = -24771.606612 eV Core-core repulsion = 21434.398890 eV Total energy + Delta-G solvation = -3337.207721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.21441 -40.87208 -37.77032 -36.82091 -34.43705 -33.22679 -31.52375 -30.71998 -29.85562 -28.75403 -27.44849 -26.30339 -24.33744 -23.17423 -22.06235 -21.69521 -20.73089 -19.56509 -18.74884 -18.02885 -17.22365 -16.74263 -16.61614 -16.37127 -15.94308 -15.56600 -15.44182 -14.97150 -14.35033 -14.19501 -13.93475 -13.76080 -13.42745 -13.37219 -13.33016 -13.14781 -13.00105 -12.83379 -12.78053 -12.50878 -12.36360 -12.12258 -11.97973 -11.95159 -11.65671 -11.49202 -11.20597 -10.71526 -10.15763 -9.33922 -9.28525 -9.11415 -8.54892 -7.60858 -4.99226 0.96116 1.41552 1.46189 1.54094 1.64931 2.01772 2.42575 2.56870 2.82856 3.44148 3.88124 3.98843 4.03151 4.07546 4.11376 4.24138 4.24457 4.34146 4.45890 4.46682 4.57070 4.67908 4.72049 4.75508 4.78572 4.87488 4.99152 5.03194 5.10446 5.10913 5.18911 5.23811 5.31899 5.51269 5.56630 5.88884 5.94844 5.99076 6.13319 6.17333 6.46989 6.48406 6.86054 7.26923 7.78582 7.99655 8.65636 9.40357 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.005650 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.308478 B = 4954.474248 C = 6162.415612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.091 3.909 3 N -0.602 5.602 4 C 0.540 3.460 5 O -0.529 6.529 6 C -0.248 4.248 7 C -0.200 4.200 8 C -0.011 4.011 9 N -0.445 5.445 10 C 0.062 3.938 11 C 0.041 3.959 12 C 0.151 3.849 13 H 0.129 0.871 14 C -0.143 4.143 15 C 0.161 3.839 16 N -0.594 5.594 17 C -0.217 4.217 18 H 0.068 0.932 19 C -0.076 4.076 20 N -0.949 5.949 21 Si 0.975 3.025 22 H -0.295 1.295 23 H -0.291 1.291 24 H -0.268 1.268 25 C 0.136 3.864 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.190 0.810 32 H 0.208 0.792 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.150 0.850 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.013 0.987 41 H 0.238 0.762 42 H -0.002 1.002 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 -21.606 -8.220 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.030 4.030 3 N -0.336 5.336 4 C 0.331 3.669 5 O -0.406 6.406 6 C -0.258 4.258 7 C -0.222 4.222 8 C -0.138 4.138 9 N -0.120 5.120 10 C -0.078 4.078 11 C -0.095 4.095 12 C 0.046 3.954 13 H 0.146 0.854 14 C -0.183 4.183 15 C 0.037 3.963 16 N -0.318 5.318 17 C -0.347 4.347 18 H 0.085 0.915 19 C -0.268 4.268 20 N -0.601 5.601 21 Si 0.805 3.195 22 H -0.223 1.223 23 H -0.218 1.218 24 H -0.193 1.193 25 C 0.009 3.991 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.206 0.794 32 H 0.224 0.776 33 H 0.105 0.895 34 H 0.132 0.868 35 H 0.101 0.899 36 H 0.168 0.832 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.031 0.969 41 H 0.048 0.952 42 H 0.016 0.984 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.407 -20.836 -8.634 23.739 hybrid contribution 0.890 1.498 -0.311 1.770 sum -6.517 -19.338 -8.945 22.281 Atomic orbital electron populations 1.22390 0.95166 1.03522 1.02153 1.22274 0.95150 0.80880 1.04717 1.47701 1.66992 1.14914 1.04004 1.18142 0.79821 0.84634 0.84330 1.91133 1.41702 1.20588 1.87189 1.20608 1.11769 1.01700 0.91753 1.23261 1.04539 0.97354 0.97093 1.22507 1.03565 0.95424 0.92313 1.43863 1.41104 1.19286 1.07739 1.22389 1.05474 1.04739 0.75170 1.21637 1.02017 0.96723 0.89133 1.21943 0.93325 0.93708 0.86374 0.85368 1.23323 0.97908 0.96656 1.00400 1.21847 0.82901 0.95857 0.95703 1.44378 1.03925 1.04328 1.79204 1.19362 0.88998 0.89130 1.37252 0.91450 1.25528 0.98379 0.99560 1.03302 1.70172 1.15846 1.18493 1.55572 0.85101 0.78377 0.78692 0.77373 1.22322 1.21753 1.19316 1.21556 0.95840 0.86011 0.95685 0.92973 0.92739 0.88419 0.88197 0.88913 0.79387 0.77562 0.89470 0.86821 0.89906 0.83250 0.90910 0.91217 0.93522 0.96947 0.95212 0.98362 0.95415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 8.68 71.98 0.62 -2.54 16 2 C 0.09 1.99 5.59 86.38 0.48 2.48 16 3 N -0.60 -20.73 2.50 -795.26 -1.99 -22.71 16 4 C 0.54 23.05 6.77 86.62 0.59 23.64 16 5 O -0.53 -29.45 10.30 -4.11 -0.04 -29.50 16 6 C -0.25 -8.53 6.04 -19.04 -0.12 -8.65 16 7 C -0.20 -4.64 7.48 23.62 0.18 -4.47 16 8 C -0.01 -0.21 11.34 83.12 0.94 0.74 16 9 N -0.44 -9.69 3.09 -547.91 -1.69 -11.38 16 10 C 0.06 0.76 11.03 127.77 1.41 2.17 16 11 C 0.04 1.32 11.13 83.92 0.93 2.26 16 12 C 0.15 5.63 3.71 46.18 0.17 5.80 16 13 H 0.13 3.59 7.84 -2.39 -0.02 3.57 16 14 C -0.14 -6.08 6.66 31.99 0.21 -5.87 16 15 C 0.16 9.28 4.89 86.85 0.43 9.70 16 16 N -0.59 -35.22 2.29 -691.98 -1.59 -36.81 16 17 C -0.22 -13.95 10.27 84.03 0.86 -13.09 16 18 H 0.07 4.20 7.83 -2.91 -0.02 4.17 16 19 C -0.08 -4.89 5.49 84.86 0.47 -4.43 16 20 N -0.95 -63.87 10.09 21.65 0.22 -63.65 16 21 Si 0.98 51.22 29.55 68.60 2.03 53.25 16 22 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 23 H -0.29 -15.02 7.11 99.48 0.71 -14.32 16 24 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 25 C 0.14 6.53 6.01 86.73 0.52 7.05 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 1.19 6.19 -2.39 -0.01 1.18 16 28 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 2.05 4.84 -2.39 -0.01 2.04 16 30 H 0.09 1.59 7.90 -2.38 -0.02 1.57 16 31 H 0.19 3.33 3.51 -2.91 -0.01 3.32 16 32 H 0.21 1.81 8.06 -2.91 -0.02 1.78 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 0.71 8.13 -2.39 -0.02 0.69 16 35 H 0.08 1.05 8.13 -2.39 -0.02 1.03 16 36 H 0.15 5.31 8.06 -2.91 -0.02 5.28 16 37 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.05 3.05 5.87 -2.39 -0.01 3.03 16 40 H 0.01 0.84 5.21 -19.72 -0.10 0.74 16 41 H 0.24 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.00 -0.08 7.39 -2.38 -0.02 -0.10 16 43 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -90.38 330.35 5.55 -84.82 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.92 Total: 11.18 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 7.70 Total: 14.80 kcal Atomic # 7 Polarization: -129.51 SS G_CDS: -5.05 Total: -134.56 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.04 Total: -29.50 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 2.03 Total: 53.25 kcal Total: -90.38 5.55 -84.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033789494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.123 kcal (2) G-P(sol) polarization free energy of solvation -90.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds