Wall clock time and date at job start Tue Mar 31 2020 06:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.47083 * 2 1 4 4 C 1.34773 * 119.99770 * 272.21710 * 3 2 1 5 5 O 1.21630 * 119.99921 * 185.30839 * 4 3 2 6 6 C 1.47261 * 120.00326 * 5.30406 * 4 3 2 7 7 C 1.46689 * 126.94124 * 7.49554 * 6 4 3 8 8 C 1.34484 * 106.33269 * 179.97438 * 7 6 4 9 9 N 1.36454 * 108.85824 * 359.97438 * 8 7 6 10 10 C 1.46496 * 124.85235 * 180.02562 * 9 8 7 11 11 C 1.34660 * 110.29258 * 359.75487 * 9 8 7 12 12 C 1.46492 * 119.99940 * 92.21967 * 3 2 1 13 13 H 1.09008 * 110.88874 * 347.82066 * 12 3 2 14 14 C 1.55159 * 111.00669 * 111.70267 * 12 3 2 15 15 C 1.54327 * 102.94180 * 82.57130 * 14 12 3 16 16 N 1.47024 * 107.27056 * 22.19424 * 15 14 12 17 17 C 1.36931 * 125.64670 * 181.02088 * 16 15 14 18 18 H 1.07998 * 120.00046 * 180.02562 * 17 16 15 19 19 C 1.38808 * 119.99962 * 359.75211 * 17 16 15 20 20 N 1.31623 * 120.00351 * 0.27396 * 19 17 16 21 21 Si 1.86799 * 119.99896 * 180.27223 * 19 17 16 22 22 H 1.48507 * 109.47220 * 90.00180 * 21 19 17 23 23 H 1.48500 * 109.47380 * 209.99975 * 21 19 17 24 24 H 1.48494 * 109.47468 * 330.00191 * 21 19 17 25 25 C 1.47428 * 108.70164 * 1.28906 * 16 15 14 26 26 H 1.08997 * 109.47217 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46983 * 300.00259 * 1 2 3 28 28 H 1.09005 * 109.46628 * 59.99974 * 1 2 3 29 29 H 1.09006 * 109.46658 * 239.99712 * 2 1 3 30 30 H 1.08993 * 109.46902 * 120.00342 * 2 1 3 31 31 H 1.07993 * 126.83602 * 359.97438 * 7 6 4 32 32 H 1.08001 * 125.57529 * 179.97438 * 8 7 6 33 33 H 1.09004 * 109.47188 * 89.97267 * 10 9 8 34 34 H 1.08999 * 109.46937 * 209.97551 * 10 9 8 35 35 H 1.09004 * 109.47043 * 329.97887 * 10 9 8 36 36 H 1.07998 * 125.79757 * 180.29300 * 11 9 8 37 37 H 1.09000 * 110.71857 * 324.20855 * 14 12 3 38 38 H 1.08999 * 110.72297 * 200.93684 * 14 12 3 39 39 H 1.09006 * 109.87848 * 262.77710 * 15 14 12 40 40 H 1.08994 * 109.87971 * 141.61544 * 15 14 12 41 41 H 0.96997 * 119.99772 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.36549 * 94.47892 * 25 16 15 43 43 H 1.09005 * 110.36219 * 216.80473 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2004 2.0316 -1.1663 5 8 2.6963 3.1422 -1.1724 6 6 1.7991 1.3975 -2.4334 7 6 1.0555 0.1434 -2.5949 8 6 0.9152 -0.0452 -3.9191 9 7 1.5113 0.9906 -4.5777 10 6 1.5646 1.1365 -6.0344 11 6 2.0384 1.8625 -3.6972 12 6 2.3089 2.0554 1.2677 13 1 1.9143 1.4866 2.1098 14 6 3.8319 2.3039 1.4293 15 6 4.0583 3.5995 0.6219 16 7 2.7637 4.2908 0.5339 17 6 2.5324 5.4717 -0.1195 18 1 1.5412 5.9004 -0.1257 19 6 3.5733 6.1208 -0.7693 20 7 4.7814 5.5985 -0.7618 21 14 3.2594 7.7357 -1.6542 22 1 3.4723 8.8651 -0.7137 23 1 4.1956 7.8625 -2.7999 24 1 1.8608 7.7634 -2.1525 25 6 1.7572 3.5053 1.2711 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.6929 -0.5003 -1.8073 32 1 0.4128 -0.8800 -4.3851 33 1 0.6925 1.6943 -6.3759 34 1 2.4713 1.6735 -6.3128 35 1 1.5695 0.1501 -6.4984 36 1 2.5630 2.7729 -3.9466 37 1 4.4044 1.4795 1.0042 38 1 4.0892 2.4531 2.4779 39 1 4.4168 3.3551 -0.3781 40 1 4.7829 4.2330 1.1332 41 1 5.5087 6.0523 -1.2156 42 1 1.6612 3.8747 2.2921 43 1 0.7954 3.5460 0.7599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033789495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:37 Heat of formation + Delta-G solvation = 124.004018 kcal Electronic energy + Delta-G solvation = -25130.528331 eV Core-core repulsion = 21795.042339 eV Total energy + Delta-G solvation = -3335.485992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.97778 -39.20124 -35.80728 -35.24122 -32.64475 -31.76334 -29.97994 -28.82444 -28.47067 -27.09066 -26.29650 -24.14117 -23.01146 -21.90817 -20.57317 -19.66989 -19.42522 -18.07169 -16.89161 -16.26081 -15.77111 -15.32702 -15.19139 -14.36017 -14.26509 -14.18444 -13.72654 -13.51717 -13.12571 -12.78368 -12.65102 -12.34837 -12.07079 -11.99540 -11.68677 -11.52933 -11.45933 -11.26902 -11.17555 -10.90061 -10.63349 -10.59006 -10.44326 -9.84555 -9.78092 -9.49359 -9.27128 -8.38705 -8.24455 -8.17116 -7.85957 -7.54035 -6.06582 -5.27261 -2.51052 2.38855 2.76626 3.06498 3.59814 3.64349 3.66158 3.85946 4.51678 4.74089 4.83307 5.07075 5.08022 5.22744 5.31395 5.39892 5.41850 5.49255 5.66544 5.74164 5.81848 5.85199 5.88851 5.93624 6.06664 6.10299 6.20001 6.28245 6.39637 6.47200 6.51598 6.73872 6.79983 6.83883 6.97598 7.11650 7.33422 7.51117 7.63514 7.91827 8.08923 8.31456 8.46131 8.71816 9.59727 9.65859 10.28115 10.95476 11.85906 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.007250 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.570724 B = 3861.351126 C = 5344.728429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.100 3.900 3 N -0.608 5.608 4 C 0.527 3.473 5 O -0.412 6.412 6 C -0.207 4.207 7 C -0.199 4.199 8 C -0.033 4.033 9 N -0.454 5.454 10 C 0.072 3.928 11 C 0.061 3.939 12 C 0.136 3.864 13 H 0.077 0.923 14 C -0.161 4.161 15 C 0.195 3.805 16 N -0.565 5.565 17 C -0.185 4.185 18 H 0.064 0.936 19 C -0.009 4.009 20 N -0.920 5.920 21 Si 0.897 3.103 22 H -0.296 1.296 23 H -0.296 1.296 24 H -0.288 1.288 25 C 0.130 3.870 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.166 0.834 32 H 0.157 0.843 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.172 0.828 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.025 0.975 41 H 0.242 0.758 42 H 0.019 0.981 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.761 -16.254 -4.818 18.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.024 4.024 3 N -0.346 5.346 4 C 0.313 3.687 5 O -0.279 6.279 6 C -0.217 4.217 7 C -0.223 4.223 8 C -0.160 4.160 9 N -0.130 5.130 10 C -0.070 4.070 11 C -0.073 4.073 12 C 0.032 3.968 13 H 0.095 0.905 14 C -0.200 4.200 15 C 0.071 3.929 16 N -0.290 5.290 17 C -0.314 4.314 18 H 0.082 0.918 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.729 3.271 22 H -0.224 1.224 23 H -0.223 1.223 24 H -0.214 1.214 25 C 0.002 3.998 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.183 0.817 32 H 0.175 0.825 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.189 0.811 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.037 0.963 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.338 -15.409 -5.348 17.886 hybrid contribution -0.338 0.651 -0.670 0.993 sum -7.676 -14.758 -6.018 17.690 Atomic orbital electron populations 1.22476 0.97138 1.01196 1.03120 1.21832 0.93577 0.84345 1.02599 1.47541 1.68746 1.12931 1.05381 1.17709 0.81956 0.86666 0.82352 1.91577 1.36170 1.15319 1.84844 1.20804 1.09123 0.98367 0.93424 1.23116 1.04994 0.98890 0.95317 1.21725 1.06406 0.95030 0.92799 1.43559 1.44108 1.19134 1.06244 1.22020 1.03588 1.03383 0.78011 1.21833 1.01210 0.95971 0.88262 1.22223 0.95977 0.94119 0.84526 0.90520 1.23374 0.95195 1.01241 1.00200 1.21094 0.87636 0.86970 0.97236 1.44112 1.03952 1.22414 1.58488 1.18769 0.94040 0.94382 1.24250 0.91779 1.24529 0.95917 0.98339 1.01569 1.69966 0.99604 1.38658 1.48766 0.86322 0.76586 0.84722 0.79422 1.22398 1.22285 1.21388 1.21798 0.93657 0.89241 0.95064 0.92455 0.92568 0.91110 0.89348 0.91862 0.81720 0.82525 0.91147 0.89836 0.90133 0.81093 0.92601 0.92443 0.91923 0.95691 0.94787 0.96319 0.94913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 8.64 37.16 0.32 -1.77 16 2 C 0.10 1.33 5.56 -4.04 -0.02 1.30 16 3 N -0.61 -10.97 2.56 -164.85 -0.42 -11.40 16 4 C 0.53 11.24 7.14 -12.59 -0.09 11.15 16 5 O -0.41 -10.85 8.82 5.25 0.05 -10.81 16 6 C -0.21 -3.76 6.04 -103.35 -0.62 -4.38 16 7 C -0.20 -2.78 7.38 -37.50 -0.28 -3.06 16 8 C -0.03 -0.41 11.34 -16.82 -0.19 -0.60 16 9 N -0.45 -5.93 3.09 -124.53 -0.38 -6.31 16 10 C 0.07 0.62 11.03 59.84 0.66 1.28 16 11 C 0.06 1.03 11.13 -16.84 -0.19 0.84 16 12 C 0.14 2.57 3.76 -65.67 -0.25 2.32 16 13 H 0.08 1.20 7.98 -51.92 -0.41 0.78 16 14 C -0.16 -3.31 6.54 -24.89 -0.16 -3.47 16 15 C 0.19 5.18 4.21 -3.06 -0.01 5.17 16 16 N -0.56 -15.46 1.74 -169.93 -0.30 -15.75 16 17 C -0.19 -5.57 8.88 -15.06 -0.13 -5.71 16 18 H 0.06 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.27 5.48 -17.43 -0.10 -0.36 16 20 N -0.92 -29.05 10.31 55.49 0.57 -28.48 16 21 Si 0.90 23.92 29.55 -169.99 -5.02 18.90 16 22 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 23 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 24 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 25 C 0.13 2.94 6.26 -2.41 -0.02 2.93 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.93 6.10 -51.93 -0.32 0.62 16 29 H 0.09 1.14 4.89 -51.93 -0.25 0.89 16 30 H 0.06 0.73 8.02 -51.93 -0.42 0.32 16 31 H 0.17 1.95 3.50 -52.49 -0.18 1.76 16 32 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 35 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 36 H 0.17 3.07 8.06 -52.49 -0.42 2.64 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.88 5.61 -51.93 -0.29 1.59 16 40 H 0.03 0.74 7.50 -51.93 -0.39 0.35 16 41 H 0.24 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.03 0.77 8.13 -51.93 -0.42 0.34 16 LS Contribution 329.90 15.07 4.97 4.97 Total: -1.00 -36.32 329.90 -8.07 -44.39 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.46 Total: -1.16 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.08 Total: 5.64 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.53 Total: -61.94 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.05 Total: -10.81 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.02 Total: 18.90 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.32 -8.07 -44.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033789495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.398 kcal (2) G-P(sol) polarization free energy of solvation -36.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds