Wall clock time and date at job start Tue Mar 31 2020 06:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.47083 * 2 1 4 4 C 1.34773 * 119.99770 * 272.21710 * 3 2 1 5 5 O 1.21630 * 119.99921 * 185.30839 * 4 3 2 6 6 C 1.47261 * 120.00326 * 5.30406 * 4 3 2 7 7 C 1.46689 * 126.94124 * 7.49554 * 6 4 3 8 8 C 1.34484 * 106.33269 * 179.97438 * 7 6 4 9 9 N 1.36454 * 108.85824 * 359.97438 * 8 7 6 10 10 C 1.46496 * 124.85235 * 180.02562 * 9 8 7 11 11 C 1.34660 * 110.29258 * 359.75487 * 9 8 7 12 12 C 1.46492 * 119.99940 * 92.21967 * 3 2 1 13 13 H 1.09008 * 110.88874 * 347.82066 * 12 3 2 14 14 C 1.55159 * 111.00669 * 111.70267 * 12 3 2 15 15 C 1.54327 * 102.94180 * 82.57130 * 14 12 3 16 16 N 1.47024 * 107.27056 * 22.19424 * 15 14 12 17 17 C 1.36931 * 125.64670 * 181.02088 * 16 15 14 18 18 H 1.07998 * 120.00046 * 180.02562 * 17 16 15 19 19 C 1.38808 * 119.99962 * 359.75211 * 17 16 15 20 20 N 1.31623 * 120.00351 * 0.27396 * 19 17 16 21 21 Si 1.86799 * 119.99896 * 180.27223 * 19 17 16 22 22 H 1.48507 * 109.47220 * 90.00180 * 21 19 17 23 23 H 1.48500 * 109.47380 * 209.99975 * 21 19 17 24 24 H 1.48494 * 109.47468 * 330.00191 * 21 19 17 25 25 C 1.47428 * 108.70164 * 1.28906 * 16 15 14 26 26 H 1.08997 * 109.47217 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46983 * 300.00259 * 1 2 3 28 28 H 1.09005 * 109.46628 * 59.99974 * 1 2 3 29 29 H 1.09006 * 109.46658 * 239.99712 * 2 1 3 30 30 H 1.08993 * 109.46902 * 120.00342 * 2 1 3 31 31 H 1.07993 * 126.83602 * 359.97438 * 7 6 4 32 32 H 1.08001 * 125.57529 * 179.97438 * 8 7 6 33 33 H 1.09004 * 109.47188 * 89.97267 * 10 9 8 34 34 H 1.08999 * 109.46937 * 209.97551 * 10 9 8 35 35 H 1.09004 * 109.47043 * 329.97887 * 10 9 8 36 36 H 1.07998 * 125.79757 * 180.29300 * 11 9 8 37 37 H 1.09000 * 110.71857 * 324.20855 * 14 12 3 38 38 H 1.08999 * 110.72297 * 200.93684 * 14 12 3 39 39 H 1.09006 * 109.87848 * 262.77710 * 15 14 12 40 40 H 1.08994 * 109.87971 * 141.61544 * 15 14 12 41 41 H 0.96997 * 119.99772 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.36549 * 94.47892 * 25 16 15 43 43 H 1.09005 * 110.36219 * 216.80473 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2004 2.0316 -1.1663 5 8 2.6963 3.1422 -1.1724 6 6 1.7991 1.3975 -2.4334 7 6 1.0555 0.1434 -2.5949 8 6 0.9152 -0.0452 -3.9191 9 7 1.5113 0.9906 -4.5777 10 6 1.5646 1.1365 -6.0344 11 6 2.0384 1.8625 -3.6972 12 6 2.3089 2.0554 1.2677 13 1 1.9143 1.4866 2.1098 14 6 3.8319 2.3039 1.4293 15 6 4.0583 3.5995 0.6219 16 7 2.7637 4.2908 0.5339 17 6 2.5324 5.4717 -0.1195 18 1 1.5412 5.9004 -0.1257 19 6 3.5733 6.1208 -0.7693 20 7 4.7814 5.5985 -0.7618 21 14 3.2594 7.7357 -1.6542 22 1 3.4723 8.8651 -0.7137 23 1 4.1956 7.8625 -2.7999 24 1 1.8608 7.7634 -2.1525 25 6 1.7572 3.5053 1.2711 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.6929 -0.5003 -1.8073 32 1 0.4128 -0.8800 -4.3851 33 1 0.6925 1.6943 -6.3759 34 1 2.4713 1.6735 -6.3128 35 1 1.5695 0.1501 -6.4984 36 1 2.5630 2.7729 -3.9466 37 1 4.4044 1.4795 1.0042 38 1 4.0892 2.4531 2.4779 39 1 4.4168 3.3551 -0.3781 40 1 4.7829 4.2330 1.1332 41 1 5.5087 6.0523 -1.2156 42 1 1.6612 3.8747 2.2921 43 1 0.7954 3.5460 0.7599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033789495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:37 Heat of formation + Delta-G solvation = 100.807506 kcal Electronic energy + Delta-G solvation = -25131.534207 eV Core-core repulsion = 21795.042339 eV Total energy + Delta-G solvation = -3336.491868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.12540 -40.73585 -37.58672 -36.67642 -34.33359 -33.17284 -31.48990 -30.54581 -29.76341 -28.73927 -27.45088 -26.21251 -24.23172 -23.20913 -21.87525 -21.64037 -20.69510 -19.41890 -18.68540 -17.87786 -17.14970 -16.83440 -16.42914 -16.20208 -15.63487 -15.58661 -15.55467 -15.03738 -14.36683 -14.05526 -13.64694 -13.55523 -13.46423 -13.36703 -13.31960 -13.10747 -12.84187 -12.78367 -12.74328 -12.41445 -12.38214 -12.08161 -12.02678 -11.96180 -11.60251 -11.42143 -11.29325 -10.50939 -9.96035 -9.27095 -9.23634 -9.07015 -8.19469 -7.58529 -4.81419 1.08200 1.40718 1.44082 1.51329 1.70306 2.07313 2.54133 2.61792 3.03075 3.58016 3.87682 4.01168 4.08149 4.12989 4.15378 4.26826 4.29080 4.40813 4.44543 4.50856 4.62109 4.69642 4.73097 4.78012 4.81385 4.92082 4.96501 5.03931 5.11857 5.14317 5.20885 5.23064 5.36025 5.55537 5.58187 5.89926 5.95101 6.11026 6.18167 6.25018 6.47596 6.51981 7.01715 7.37025 8.05890 8.08987 8.73449 9.53397 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.007250 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.570724 B = 3861.351126 C = 5344.728429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.094 3.906 3 N -0.606 5.606 4 C 0.518 3.482 5 O -0.482 6.482 6 C -0.240 4.240 7 C -0.203 4.203 8 C -0.014 4.014 9 N -0.447 5.447 10 C 0.064 3.936 11 C 0.034 3.966 12 C 0.149 3.851 13 H 0.129 0.871 14 C -0.146 4.146 15 C 0.208 3.792 16 N -0.578 5.578 17 C -0.189 4.189 18 H 0.058 0.942 19 C -0.068 4.068 20 N -0.947 5.947 21 Si 0.959 3.041 22 H -0.289 1.289 23 H -0.300 1.300 24 H -0.281 1.281 25 C 0.125 3.875 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.189 0.811 32 H 0.206 0.794 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.143 0.857 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.020 0.980 40 H -0.021 1.021 41 H 0.232 0.768 42 H 0.033 0.967 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.128 -19.768 -4.889 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.027 4.027 3 N -0.342 5.342 4 C 0.306 3.694 5 O -0.354 6.354 6 C -0.251 4.251 7 C -0.226 4.226 8 C -0.141 4.141 9 N -0.122 5.122 10 C -0.077 4.077 11 C -0.102 4.102 12 C 0.044 3.956 13 H 0.147 0.853 14 C -0.186 4.186 15 C 0.083 3.917 16 N -0.302 5.302 17 C -0.319 4.319 18 H 0.076 0.924 19 C -0.260 4.260 20 N -0.599 5.599 21 Si 0.791 3.209 22 H -0.217 1.217 23 H -0.227 1.227 24 H -0.206 1.206 25 C -0.002 4.002 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.206 0.794 32 H 0.223 0.777 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.134 0.866 36 H 0.160 0.840 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.038 0.962 40 H -0.003 1.003 41 H 0.041 0.959 42 H 0.051 0.949 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -9.765 -18.991 -5.406 22.028 hybrid contribution 0.313 1.646 -0.720 1.824 sum -9.452 -17.345 -6.126 20.681 Atomic orbital electron populations 1.22389 0.95485 1.03266 1.01974 1.22167 0.94813 0.81463 1.04306 1.47659 1.67789 1.14662 1.04116 1.18346 0.80680 0.86241 0.84159 1.91544 1.39405 1.18293 1.86109 1.20794 1.11289 1.00732 0.92262 1.23297 1.04855 0.97448 0.97020 1.22479 1.04269 0.94978 0.92343 1.43826 1.42599 1.18181 1.07622 1.22355 1.04148 1.05755 0.75417 1.21567 1.02722 0.96401 0.89462 1.22198 0.94166 0.92640 0.86625 0.85350 1.23213 0.96987 0.97989 1.00374 1.20717 0.86620 0.88869 0.95456 1.44239 1.05408 1.22178 1.58387 1.19010 0.93582 0.95431 1.23926 0.92440 1.25254 0.95904 1.01774 1.03064 1.70231 1.00135 1.39805 1.49749 0.85324 0.76439 0.81068 0.78089 1.21655 1.22700 1.20635 1.22000 0.92158 0.91475 0.94559 0.88656 0.93031 0.92999 0.88785 0.89050 0.79412 0.77740 0.89973 0.90018 0.86632 0.83952 0.91649 0.90076 0.96211 1.00270 0.95855 0.94938 0.96241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 8.64 71.98 0.62 -2.69 16 2 C 0.09 2.15 5.56 86.38 0.48 2.63 16 3 N -0.61 -21.10 2.56 -793.72 -2.03 -23.13 16 4 C 0.52 22.75 7.14 86.62 0.62 23.37 16 5 O -0.48 -27.01 8.82 -4.13 -0.04 -27.05 16 6 C -0.24 -8.83 6.04 -19.04 -0.12 -8.94 16 7 C -0.20 -5.16 7.38 23.62 0.17 -4.98 16 8 C -0.01 -0.28 11.34 83.11 0.94 0.66 16 9 N -0.45 -10.96 3.09 -547.89 -1.69 -12.65 16 10 C 0.06 0.94 11.03 127.77 1.41 2.35 16 11 C 0.03 1.20 11.13 83.91 0.93 2.14 16 12 C 0.15 5.32 3.76 46.46 0.17 5.50 16 13 H 0.13 3.37 7.98 -2.38 -0.02 3.35 16 14 C -0.15 -5.94 6.54 31.78 0.21 -5.73 16 15 C 0.21 11.67 4.21 86.73 0.37 12.03 16 16 N -0.58 -33.05 1.74 -691.54 -1.21 -34.25 16 17 C -0.19 -11.96 8.88 84.03 0.75 -11.21 16 18 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 19 C -0.07 -4.38 5.48 84.86 0.47 -3.92 16 20 N -0.95 -63.78 10.31 21.65 0.22 -63.56 16 21 Si 0.96 51.70 29.55 68.60 2.03 53.73 16 22 H -0.29 -15.10 7.11 99.48 0.71 -14.40 16 23 H -0.30 -16.19 7.11 99.48 0.71 -15.49 16 24 H -0.28 -14.59 7.11 99.48 0.71 -13.88 16 25 C 0.12 5.65 6.26 86.93 0.54 6.20 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.22 6.10 -2.38 -0.01 1.20 16 29 H 0.09 2.09 4.89 -2.38 -0.01 2.08 16 30 H 0.09 1.63 8.02 -2.39 -0.02 1.61 16 31 H 0.19 3.69 3.50 -2.91 -0.01 3.68 16 32 H 0.21 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.08 1.25 8.13 -2.39 -0.02 1.23 16 35 H 0.12 0.94 8.13 -2.38 -0.02 0.92 16 36 H 0.14 5.72 8.06 -2.91 -0.02 5.70 16 37 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.02 1.29 5.61 -2.38 -0.01 1.27 16 40 H -0.02 -1.31 7.50 -2.39 -0.02 -1.33 16 41 H 0.23 15.32 8.31 -92.71 -0.77 14.55 16 42 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.02 0.92 8.13 -2.38 -0.02 0.90 16 Total: -1.00 -88.22 329.90 5.85 -82.36 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.00 Total: 7.15 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 7.57 Total: 17.40 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -4.71 Total: -133.59 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.04 Total: -27.05 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 2.03 Total: 53.73 kcal Total: -88.22 5.85 -82.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033789495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.171 kcal (2) G-P(sol) polarization free energy of solvation -88.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds